data_6ISR # _model_server_result.job_id 7rsSCM1cOnMmcsewwa846w _model_server_result.datetime_utc '2025-01-08 07:31:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6isr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6ISR # _exptl.entry_id 6ISR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.41 _cell.angle_gamma 90 _cell.entry_id 6ISR _cell.length_a 52.288 _cell.length_b 44.559 _cell.length_c 132.947 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ISR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 22 1_555 A SG CYS 68 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 220 A CYS 216 1_555 A SG CYS 262 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 297 A CYS 293 1_555 A SG CYS 315 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 B SG CYS 26 B CYS 22 1_555 B SG CYS 68 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 B SG CYS 220 B CYS 216 1_555 B SG CYS 262 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 B SG CYS 297 B CYS 293 1_555 B SG CYS 315 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc1 A NE2 HIS 228 A HIS 224 1_555 C NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 C NI NI . A NI 401 1_555 J O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc3 B SG CYS 109 B CYS 105 1_555 F NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc4 B NE2 HIS 228 B HIS 224 1_555 F NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 F NI NI . B NI 401 1_555 K O HOH . B HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ISR _atom_sites.fract_transf_matrix[1][1] 0.019125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000197 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 401 2 NI NI . D 3 PEG A 1 402 2 PEG PEG . E 4 PG4 A 1 403 2 PG4 PG4 . F 2 NI B 1 401 1 NI NI . G 3 PEG B 1 402 1 PEG PEG . H 3 PEG B 1 403 3 PEG PEG . I 4 PG4 B 1 404 1 PG4 PG4 . J 5 HOH A 1 501 2 HOH HOH . J 5 HOH A 2 502 64 HOH HOH . J 5 HOH A 3 503 8 HOH HOH . J 5 HOH A 4 504 3 HOH HOH . J 5 HOH A 5 505 78 HOH HOH . J 5 HOH A 6 506 32 HOH HOH . J 5 HOH A 7 507 9 HOH HOH . J 5 HOH A 8 508 49 HOH HOH . J 5 HOH A 9 509 24 HOH HOH . J 5 HOH A 10 510 13 HOH HOH . J 5 HOH A 11 511 7 HOH HOH . J 5 HOH A 12 512 31 HOH HOH . J 5 HOH A 13 513 41 HOH HOH . J 5 HOH A 14 514 19 HOH HOH . J 5 HOH A 15 515 33 HOH HOH . J 5 HOH A 16 516 20 HOH HOH . J 5 HOH A 17 517 12 HOH HOH . J 5 HOH A 18 518 60 HOH HOH . J 5 HOH A 19 519 34 HOH HOH . J 5 HOH A 20 520 22 HOH HOH . J 5 HOH A 21 521 27 HOH HOH . J 5 HOH A 22 522 57 HOH HOH . J 5 HOH A 23 523 52 HOH HOH . J 5 HOH A 24 524 46 HOH HOH . J 5 HOH A 25 525 21 HOH HOH . J 5 HOH A 26 526 51 HOH HOH . J 5 HOH A 27 527 61 HOH HOH . J 5 HOH A 28 528 38 HOH HOH . J 5 HOH A 29 529 45 HOH HOH . J 5 HOH A 30 530 62 HOH HOH . J 5 HOH A 31 531 14 HOH HOH . K 5 HOH B 1 501 4 HOH HOH . K 5 HOH B 2 502 28 HOH HOH . K 5 HOH B 3 503 1 HOH HOH . K 5 HOH B 4 504 68 HOH HOH . K 5 HOH B 5 505 44 HOH HOH . K 5 HOH B 6 506 23 HOH HOH . K 5 HOH B 7 507 36 HOH HOH . K 5 HOH B 8 508 26 HOH HOH . K 5 HOH B 9 509 39 HOH HOH . K 5 HOH B 10 510 48 HOH HOH . K 5 HOH B 11 511 29 HOH HOH . K 5 HOH B 12 512 10 HOH HOH . K 5 HOH B 13 513 5 HOH HOH . K 5 HOH B 14 514 56 HOH HOH . K 5 HOH B 15 515 6 HOH HOH . K 5 HOH B 16 516 16 HOH HOH . K 5 HOH B 17 517 11 HOH HOH . K 5 HOH B 18 518 35 HOH HOH . K 5 HOH B 19 519 15 HOH HOH . K 5 HOH B 20 520 43 HOH HOH . K 5 HOH B 21 521 18 HOH HOH . K 5 HOH B 22 522 55 HOH HOH . K 5 HOH B 23 523 77 HOH HOH . K 5 HOH B 24 524 66 HOH HOH . K 5 HOH B 25 525 58 HOH HOH . K 5 HOH B 26 526 67 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.235 _atom_site.Cartn_y 20.471 _atom_site.Cartn_z -18.816 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #