data_6ITD # _model_server_result.job_id mbiuj1OMa9sCI-a_FnrZkg _model_server_result.datetime_utc '2024-11-20 06:41:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6itd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6ITD # _exptl.entry_id 6ITD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 231.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(1-AMINOETHYL)NONANEDIOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ITD _cell.length_a 71.167 _cell.length_b 71.167 _cell.length_c 98.211 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ITD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 32.737 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H21 N O4' _chem_comp.formula_weight 231.289 _chem_comp.id IKT _chem_comp.mon_nstd_flag . _chem_comp.name '3-(1-AMINOETHYL)NONANEDIOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 IKT doub 152 n n C1 O2 IKT sing 153 n n C1 C2 IKT sing 154 n n O2 HO2 IKT sing 155 n n C2 C3 IKT sing 156 n n C2 H21 IKT sing 157 n n C2 H22 IKT sing 158 n n C3 C4 IKT sing 159 n n C3 C1' IKT sing 160 n n C3 H3 IKT sing 161 n n C4 C5 IKT sing 162 n n C4 H41 IKT sing 163 n n C4 H42 IKT sing 164 n n C5 C6 IKT sing 165 n n C5 H51 IKT sing 166 n n C5 H52 IKT sing 167 n n C6 C7 IKT sing 168 n n C6 H61 IKT sing 169 n n C6 H62 IKT sing 170 n n C7 C8 IKT sing 171 n n C7 H71 IKT sing 172 n n C7 H72 IKT sing 173 n n C8 C9 IKT sing 174 n n C8 H81 IKT sing 175 n n C8 H82 IKT sing 176 n n C9 O3 IKT doub 177 n n C9 O4 IKT sing 178 n n O4 HO4 IKT sing 179 n n C1' C2' IKT sing 180 n n C1' N1' IKT sing 181 n n C1' H1' IKT sing 182 n n C2' "H2'1" IKT sing 183 n n C2' "H2'2" IKT sing 184 n n C2' "H2'3" IKT sing 185 n n N1' HN11 IKT sing 186 n n N1' HN12 IKT sing 187 n n # _atom_sites.entry_id 6ITD _atom_sites.fract_transf_matrix[1][1] 0.014051 _atom_sites.fract_transf_matrix[1][2] 0.008113 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IKT A 1 401 401 IKT DRG . C 3 HOH A 1 501 26 HOH HOH . C 3 HOH A 2 502 72 HOH HOH . C 3 HOH A 3 503 20 HOH HOH . C 3 HOH A 4 504 85 HOH HOH . C 3 HOH A 5 505 93 HOH HOH . C 3 HOH A 6 506 33 HOH HOH . C 3 HOH A 7 507 88 HOH HOH . C 3 HOH A 8 508 58 HOH HOH . C 3 HOH A 9 509 77 HOH HOH . C 3 HOH A 10 510 54 HOH HOH . C 3 HOH A 11 511 65 HOH HOH . C 3 HOH A 12 512 42 HOH HOH . C 3 HOH A 13 513 2 HOH HOH . C 3 HOH A 14 514 96 HOH HOH . C 3 HOH A 15 515 45 HOH HOH . C 3 HOH A 16 516 66 HOH HOH . C 3 HOH A 17 517 73 HOH HOH . C 3 HOH A 18 518 23 HOH HOH . C 3 HOH A 19 519 86 HOH HOH . C 3 HOH A 20 520 1 HOH HOH . C 3 HOH A 21 521 22 HOH HOH . C 3 HOH A 22 522 74 HOH HOH . C 3 HOH A 23 523 56 HOH HOH . C 3 HOH A 24 524 97 HOH HOH . C 3 HOH A 25 525 78 HOH HOH . C 3 HOH A 26 526 29 HOH HOH . C 3 HOH A 27 527 95 HOH HOH . C 3 HOH A 28 528 84 HOH HOH . C 3 HOH A 29 529 46 HOH HOH . C 3 HOH A 30 530 13 HOH HOH . C 3 HOH A 31 531 14 HOH HOH . C 3 HOH A 32 532 50 HOH HOH . C 3 HOH A 33 533 24 HOH HOH . C 3 HOH A 34 534 44 HOH HOH . C 3 HOH A 35 535 16 HOH HOH . C 3 HOH A 36 536 12 HOH HOH . C 3 HOH A 37 537 62 HOH HOH . C 3 HOH A 38 538 25 HOH HOH . C 3 HOH A 39 539 94 HOH HOH . C 3 HOH A 40 540 55 HOH HOH . C 3 HOH A 41 541 57 HOH HOH . C 3 HOH A 42 542 60 HOH HOH . C 3 HOH A 43 543 11 HOH HOH . C 3 HOH A 44 544 76 HOH HOH . C 3 HOH A 45 545 80 HOH HOH . C 3 HOH A 46 546 63 HOH HOH . C 3 HOH A 47 547 51 HOH HOH . C 3 HOH A 48 548 75 HOH HOH . C 3 HOH A 49 549 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IKT . . . B 2 -19.244 61.486 2.755 1 71.24 ? C1 IKT 401 A 1 HETATM 2 O O1 IKT . . . B 2 -19.79 61.052 1.716 1 69.55 ? O1 IKT 401 A 1 HETATM 3 O O2 IKT . . . B 2 -18.022 61.691 2.913 1 81.56 ? O2 IKT 401 A 1 HETATM 4 C C2 IKT . . . B 2 -20.165 61.684 3.953 1 67.87 ? C2 IKT 401 A 1 HETATM 5 C C3 IKT . . . B 2 -19.495 62.318 5.189 1 61.74 ? C3 IKT 401 A 1 HETATM 6 C C4 IKT . . . B 2 -20.628 62.356 6.167 1 58.55 ? C4 IKT 401 A 1 HETATM 7 C C5 IKT . . . B 2 -20.138 62.751 7.541 1 54.56 ? C5 IKT 401 A 1 HETATM 8 C C6 IKT . . . B 2 -21.398 62.533 8.341 1 51.52 ? C6 IKT 401 A 1 HETATM 9 C C7 IKT . . . B 2 -21.174 63.18 9.718 1 50.21 ? C7 IKT 401 A 1 HETATM 10 C C8 IKT . . . B 2 -22.482 63.094 10.525 1 50.16 ? C8 IKT 401 A 1 HETATM 11 C C9 IKT . . . B 2 -22.518 64.104 11.695 1 48.46 ? C9 IKT 401 A 1 HETATM 12 O O3 IKT . . . B 2 -23.621 64.652 11.945 1 46.46 ? O3 IKT 401 A 1 HETATM 13 O O4 IKT . . . B 2 -21.456 64.278 12.329 1 41.91 ? O4 IKT 401 A 1 HETATM 14 C C1' IKT . . . B 2 -18.826 63.708 4.949 1 63.66 ? C1' IKT 401 A 1 HETATM 15 C C2' IKT . . . B 2 -19.597 64.657 4.015 1 64.02 ? C2' IKT 401 A 1 HETATM 16 N N1' IKT . . . B 2 -17.44 63.574 4.457 1 67.45 ? N1' IKT 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #