data_6ITL # _model_server_result.job_id GoLXmbK9s25xtr87BFoGQg _model_server_result.datetime_utc '2025-04-27 22:58:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6itl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6ITL # _exptl.entry_id 6ITL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ITL _cell.length_a 80.089 _cell.length_b 80.089 _cell.length_c 193.15 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ITL _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 80.089 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 6ITL _atom_sites.fract_transf_matrix[1][1] 0.012486 _atom_sites.fract_transf_matrix[1][2] 0.007209 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 401 1 NAD NAD . C 3 GOL A 1 402 2 GOL GOL . D 4 HOH A 1 501 85 HOH HOH . D 4 HOH A 2 502 126 HOH HOH . D 4 HOH A 3 503 79 HOH HOH . D 4 HOH A 4 504 52 HOH HOH . D 4 HOH A 5 505 67 HOH HOH . D 4 HOH A 6 506 72 HOH HOH . D 4 HOH A 7 507 70 HOH HOH . D 4 HOH A 8 508 84 HOH HOH . D 4 HOH A 9 509 30 HOH HOH . D 4 HOH A 10 510 135 HOH HOH . D 4 HOH A 11 511 63 HOH HOH . D 4 HOH A 12 512 43 HOH HOH . D 4 HOH A 13 513 25 HOH HOH . D 4 HOH A 14 514 142 HOH HOH . D 4 HOH A 15 515 103 HOH HOH . D 4 HOH A 16 516 20 HOH HOH . D 4 HOH A 17 517 31 HOH HOH . D 4 HOH A 18 518 110 HOH HOH . D 4 HOH A 19 519 152 HOH HOH . D 4 HOH A 20 520 146 HOH HOH . D 4 HOH A 21 521 54 HOH HOH . D 4 HOH A 22 522 9 HOH HOH . D 4 HOH A 23 523 109 HOH HOH . D 4 HOH A 24 524 136 HOH HOH . D 4 HOH A 25 525 48 HOH HOH . D 4 HOH A 26 526 10 HOH HOH . D 4 HOH A 27 527 105 HOH HOH . D 4 HOH A 28 528 4 HOH HOH . D 4 HOH A 29 529 27 HOH HOH . D 4 HOH A 30 530 139 HOH HOH . D 4 HOH A 31 531 38 HOH HOH . D 4 HOH A 32 532 26 HOH HOH . D 4 HOH A 33 533 24 HOH HOH . D 4 HOH A 34 534 21 HOH HOH . D 4 HOH A 35 535 19 HOH HOH . D 4 HOH A 36 536 45 HOH HOH . D 4 HOH A 37 537 12 HOH HOH . D 4 HOH A 38 538 91 HOH HOH . D 4 HOH A 39 539 124 HOH HOH . D 4 HOH A 40 540 50 HOH HOH . D 4 HOH A 41 541 82 HOH HOH . D 4 HOH A 42 542 39 HOH HOH . D 4 HOH A 43 543 28 HOH HOH . D 4 HOH A 44 544 119 HOH HOH . D 4 HOH A 45 545 8 HOH HOH . D 4 HOH A 46 546 116 HOH HOH . D 4 HOH A 47 547 49 HOH HOH . D 4 HOH A 48 548 33 HOH HOH . D 4 HOH A 49 549 13 HOH HOH . D 4 HOH A 50 550 78 HOH HOH . D 4 HOH A 51 551 58 HOH HOH . D 4 HOH A 52 552 117 HOH HOH . D 4 HOH A 53 553 83 HOH HOH . D 4 HOH A 54 554 89 HOH HOH . D 4 HOH A 55 555 106 HOH HOH . D 4 HOH A 56 556 42 HOH HOH . D 4 HOH A 57 557 66 HOH HOH . D 4 HOH A 58 558 81 HOH HOH . D 4 HOH A 59 559 133 HOH HOH . D 4 HOH A 60 560 44 HOH HOH . D 4 HOH A 61 561 36 HOH HOH . D 4 HOH A 62 562 11 HOH HOH . D 4 HOH A 63 563 56 HOH HOH . D 4 HOH A 64 564 88 HOH HOH . D 4 HOH A 65 565 99 HOH HOH . D 4 HOH A 66 566 14 HOH HOH . D 4 HOH A 67 567 69 HOH HOH . D 4 HOH A 68 568 74 HOH HOH . D 4 HOH A 69 569 123 HOH HOH . D 4 HOH A 70 570 61 HOH HOH . D 4 HOH A 71 571 104 HOH HOH . D 4 HOH A 72 572 97 HOH HOH . D 4 HOH A 73 573 128 HOH HOH . D 4 HOH A 74 574 98 HOH HOH . D 4 HOH A 75 575 92 HOH HOH . D 4 HOH A 76 576 111 HOH HOH . D 4 HOH A 77 577 90 HOH HOH . D 4 HOH A 78 578 23 HOH HOH . D 4 HOH A 79 579 3 HOH HOH . D 4 HOH A 80 580 95 HOH HOH . D 4 HOH A 81 581 51 HOH HOH . D 4 HOH A 82 582 86 HOH HOH . D 4 HOH A 83 583 120 HOH HOH . D 4 HOH A 84 584 144 HOH HOH . D 4 HOH A 85 585 64 HOH HOH . D 4 HOH A 86 586 153 HOH HOH . D 4 HOH A 87 587 62 HOH HOH . D 4 HOH A 88 588 76 HOH HOH . D 4 HOH A 89 589 73 HOH HOH . D 4 HOH A 90 590 55 HOH HOH . D 4 HOH A 91 591 68 HOH HOH . D 4 HOH A 92 592 32 HOH HOH . D 4 HOH A 93 593 47 HOH HOH . D 4 HOH A 94 594 102 HOH HOH . D 4 HOH A 95 595 87 HOH HOH . D 4 HOH A 96 596 18 HOH HOH . D 4 HOH A 97 597 129 HOH HOH . D 4 HOH A 98 598 134 HOH HOH . D 4 HOH A 99 599 7 HOH HOH . D 4 HOH A 100 600 16 HOH HOH . D 4 HOH A 101 601 37 HOH HOH . D 4 HOH A 102 602 118 HOH HOH . D 4 HOH A 103 603 59 HOH HOH . D 4 HOH A 104 604 75 HOH HOH . D 4 HOH A 105 605 125 HOH HOH . D 4 HOH A 106 606 115 HOH HOH . D 4 HOH A 107 607 35 HOH HOH . D 4 HOH A 108 608 41 HOH HOH . D 4 HOH A 109 609 122 HOH HOH . D 4 HOH A 110 610 96 HOH HOH . D 4 HOH A 111 611 46 HOH HOH . D 4 HOH A 112 612 5 HOH HOH . D 4 HOH A 113 613 77 HOH HOH . D 4 HOH A 114 614 121 HOH HOH . D 4 HOH A 115 615 29 HOH HOH . D 4 HOH A 116 616 80 HOH HOH . D 4 HOH A 117 617 22 HOH HOH . D 4 HOH A 118 618 108 HOH HOH . D 4 HOH A 119 619 60 HOH HOH . D 4 HOH A 120 620 107 HOH HOH . D 4 HOH A 121 621 94 HOH HOH . D 4 HOH A 122 622 40 HOH HOH . D 4 HOH A 123 623 132 HOH HOH . D 4 HOH A 124 624 15 HOH HOH . D 4 HOH A 125 625 65 HOH HOH . D 4 HOH A 126 626 34 HOH HOH . D 4 HOH A 127 627 57 HOH HOH . D 4 HOH A 128 628 140 HOH HOH . D 4 HOH A 129 629 150 HOH HOH . D 4 HOH A 130 630 141 HOH HOH . D 4 HOH A 131 631 71 HOH HOH . D 4 HOH A 132 632 100 HOH HOH . D 4 HOH A 133 633 151 HOH HOH . D 4 HOH A 134 634 114 HOH HOH . D 4 HOH A 135 635 17 HOH HOH . D 4 HOH A 136 636 93 HOH HOH . D 4 HOH A 137 637 53 HOH HOH . D 4 HOH A 138 638 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 34.123 29.472 6.109 1 25.87 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . B 2 35.273 29.095 5.246 1 21.9 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . B 2 33.893 30.922 6.418 1 28.81 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . B 2 32.837 28.793 5.459 1 25.43 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . B 2 31.512 29.06 5.914 1 24.95 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . B 2 30.588 29.073 4.724 1 25.33 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . B 2 29.24 29.248 5.214 1 25.25 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . B 2 30.799 30.189 3.678 1 26.35 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . B 2 30.918 29.606 2.392 1 24.9 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . B 2 29.519 31.04 3.78 1 26.69 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . B 2 29.146 31.705 2.577 1 23.16 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . B 2 28.557 29.927 4.196 1 26.8 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . B 2 27.268 30.387 4.683 1 24.52 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . B 2 27.027 31.517 5.441 1 25.29 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . B 2 25.745 31.708 5.681 1 23.82 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . B 2 25.099 30.7 4.973 1 23.23 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . B 2 23.735 30.382 4.8 1 26.3 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . B 2 22.725 31.085 5.317 1 24.2 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . B 2 23.439 29.297 4.044 1 23.99 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . B 2 24.458 28.602 3.506 1 25.74 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . B 2 25.775 28.805 3.58 1 23.53 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . B 2 26.037 29.877 4.353 1 26.77 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . B 2 34.194 28.664 7.492 1 22.85 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . B 2 34.84 27.214 7.835 1 26.74 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . B 2 34.474 26.303 6.703 1 24 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . B 2 36.257 27.374 8.311 1 25.34 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . B 2 33.959 26.901 9.109 1 23.09 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . B 2 32.545 26.605 8.995 1 23.84 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . B 2 31.982 26.409 10.38 1 25.37 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . B 2 32.492 25.174 10.972 1 25.3 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . B 2 32.331 27.509 11.395 1 26.49 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . B 2 31.208 27.754 12.229 1 29.01 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . B 2 33.375 26.863 12.289 1 27.82 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . B 2 33.281 27.405 13.59 1 31.09 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . B 2 32.888 25.42 12.318 1 26.2 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . B 2 33.904 24.416 12.78 1 26.13 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . B 2 33.432 23.301 13.459 1 25.73 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . B 2 34.327 22.343 13.954 1 25.82 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . B 2 33.822 21.158 14.732 1 23.59 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . B 2 34.675 20.435 15.227 1 22.7 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . B 2 32.499 20.922 14.833 1 23.86 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . B 2 35.712 22.547 13.782 1 26.64 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . B 2 36.142 23.558 12.932 1 29.42 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . B 2 35.245 24.557 12.569 1 26.03 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 44 #