data_6IU3 # _model_server_result.job_id hQdh6yPBvI8qENpl4hr6Ww _model_server_result.datetime_utc '2024-11-21 14:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6iu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6IU3 # _exptl.entry_id 6IU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IU3 _cell.length_a 46.9 _cell.length_b 290.24 _cell.length_c 45.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 22.93 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 81 A GLU 102 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc2 A OE1 GLU 84 A GLU 105 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 A OE2 GLU 84 A GLU 105 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc4 A OE1 GLU 92 A GLU 113 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 A OE2 GLU 92 A GLU 113 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc6 A OE1 GLU 92 A GLU 113 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc7 A OE1 GLU 95 A GLU 116 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc8 A OE2 GLU 95 A GLU 116 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc9 A OE2 GLU 95 A GLU 116 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 A SD MET 128 A MET 149 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 222 n n C10 C9 OLC doub 223 n n C10 C11 OLC sing 224 n n C9 C8 OLC sing 225 n n C17 C16 OLC sing 226 z n C11 C12 OLC sing 227 n n C8 C7 OLC sing 228 n n C24 C22 OLC sing 229 n n C24 O25 OLC sing 230 n n C16 C15 OLC sing 231 n n C12 C13 OLC sing 232 n n C7 C6 OLC sing 233 n n C15 C14 OLC sing 234 n n C13 C14 OLC sing 235 n n C6 C5 OLC sing 236 n n C5 C4 OLC sing 237 n n C4 C3 OLC sing 238 n n C3 C2 OLC sing 239 n n C2 C1 OLC sing 240 n n C21 C22 OLC sing 241 n n C21 O20 OLC sing 242 n n C1 O19 OLC doub 243 n n C1 O20 OLC sing 244 n n C22 O23 OLC sing 245 n n C18 H18 OLC sing 246 n n C18 H18A OLC sing 247 n n C18 H18B OLC sing 248 n n C10 H10 OLC sing 249 n n C9 H9 OLC sing 250 n n C17 H17 OLC sing 251 n n C17 H17A OLC sing 252 n n C11 H11 OLC sing 253 n n C11 H11A OLC sing 254 n n C8 H8 OLC sing 255 n n C8 H8A OLC sing 256 n n C24 H24 OLC sing 257 n n C24 H24A OLC sing 258 n n C16 H16 OLC sing 259 n n C16 H16A OLC sing 260 n n C12 H12 OLC sing 261 n n C12 H12A OLC sing 262 n n C7 H7 OLC sing 263 n n C7 H7A OLC sing 264 n n C15 H15 OLC sing 265 n n C15 H15A OLC sing 266 n n C13 H13 OLC sing 267 n n C13 H13A OLC sing 268 n n C6 H6 OLC sing 269 n n C6 H6A OLC sing 270 n n C14 H14 OLC sing 271 n n C14 H14A OLC sing 272 n n C5 H5 OLC sing 273 n n C5 H5A OLC sing 274 n n C4 H4 OLC sing 275 n n C4 H4A OLC sing 276 n n C3 H3 OLC sing 277 n n C3 H3A OLC sing 278 n n C2 H2 OLC sing 279 n n C2 H2A OLC sing 280 n n C21 H21 OLC sing 281 n n C21 H21A OLC sing 282 n n C22 H22 OLC sing 283 n n O25 HO25 OLC sing 284 n n O23 HO23 OLC sing 285 n n # _atom_sites.entry_id 6IU3 _atom_sites.fract_transf_matrix[1][1] 0.021322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 301 1 OLC OLC . C 3 ZN A 1 302 1 ZN ZN . D 3 ZN A 1 303 2 ZN ZN . E 3 ZN A 1 304 3 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . B 2 -23.18 51.631 -5.79 1 123.13 ? C10 OLC 301 A 1 HETATM 2 C C9 OLC . . . B 2 -23.327 50.359 -5.419 1 116.87 ? C9 OLC 301 A 1 HETATM 3 C C11 OLC . . . B 2 -21.863 52.214 -6.26 1 121.72 ? C11 OLC 301 A 1 HETATM 4 C C8 OLC . . . B 2 -22.174 49.387 -5.416 1 118.26 ? C8 OLC 301 A 1 HETATM 5 C C24 OLC . . . B 2 -13.067 43.353 -8.411 1 105.61 ? C24 OLC 301 A 1 HETATM 6 C C12 OLC . . . B 2 -22.096 52.838 -7.636 1 114.26 ? C12 OLC 301 A 1 HETATM 7 C C7 OLC . . . B 2 -22.542 48.23 -4.489 1 117.5 ? C7 OLC 301 A 1 HETATM 8 C C15 OLC . . . B 2 -21.021 56.091 -9.426 1 100.12 ? C15 OLC 301 A 1 HETATM 9 C C13 OLC . . . B 2 -21.268 54.092 -7.882 1 105.61 ? C13 OLC 301 A 1 HETATM 10 C C6 OLC . . . B 2 -21.373 47.834 -3.591 1 115.12 ? C6 OLC 301 A 1 HETATM 11 C C14 OLC . . . B 2 -21.824 54.838 -9.092 1 99.55 ? C14 OLC 301 A 1 HETATM 12 C C5 OLC . . . B 2 -20.273 47.126 -4.378 1 112.4 ? C5 OLC 301 A 1 HETATM 13 C C4 OLC . . . B 2 -20.781 45.836 -5.012 1 113.74 ? C4 OLC 301 A 1 HETATM 14 C C3 OLC . . . B 2 -19.642 44.84 -5.188 1 110.05 ? C3 OLC 301 A 1 HETATM 15 C C2 OLC . . . B 2 -18.586 45.395 -6.14 1 112.12 ? C2 OLC 301 A 1 HETATM 16 C C21 OLC . . . B 2 -15.028 44.182 -7.061 1 105.17 ? C21 OLC 301 A 1 HETATM 17 C C1 OLC . . . B 2 -17.315 44.565 -6.115 1 105.35 ? C1 OLC 301 A 1 HETATM 18 C C22 OLC . . . B 2 -14.584 43.507 -8.359 1 112.21 ? C22 OLC 301 A 1 HETATM 19 O O19 OLC . . . B 2 -17.05 43.826 -5.184 1 97.36 ? O19 OLC 301 A 1 HETATM 20 O O25 OLC . . . B 2 -12.706 42.679 -9.624 1 101.25 ? O25 OLC 301 A 1 HETATM 21 O O23 OLC . . . B 2 -15.183 42.208 -8.455 1 114.38 ? O23 OLC 301 A 1 HETATM 22 O O20 OLC . . . B 2 -16.368 44.647 -7.216 1 107.59 ? O20 OLC 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 417 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #