data_6IWK
#
_model_server_result.job_id            MataPjDTQB5HJ_jwBYbGhA 
_model_server_result.datetime_utc      '2024-11-30 00:01:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6iwk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6IWK 
#
_exptl.entry_id    6IWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6IWK 
_cell.length_a            46.193 
_cell.length_b            64.768 
_cell.length_c            168.736 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 140 A CYS 140 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 A SG CYS 216 A CYS 216 1_555 A SG CYS 251 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A OD1 ASP 1 A ASP 1 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc2 A O GLN 2 A GLN 2 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc3 A O HIS 13 A HIS 13 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc4 A OD1 ASP 16 A ASP 16 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc5 A OE1 GLU 17 A GLU 17 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc6 A OD1 ASN 116 A ASN 116 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc7 A OD1 ASP 151 A ASP 151 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc8 A OD2 ASP 151 A ASP 151 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc9 A O ASP 154 A ASP 154 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc10 A OD2 ASP 162 A ASP 162 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc11 A O GLY 197 A GLY 197 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6IWK 
_atom_sites.fract_transf_matrix[1][1]    0.021648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005926 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 420 GOL GOL . 
C 2 GOL A 1 502 421 GOL GOL . 
D 3 CA A 1 503 422 CA CA . 
E 3 CA A 1 504 423 CA CA . 
F 4 HOH A 1 601 154 HOH HOH . 
F 4 HOH A 2 602 147 HOH HOH . 
F 4 HOH A 3 603 76 HOH HOH . 
F 4 HOH A 4 604 150 HOH HOH . 
F 4 HOH A 5 605 8 HOH HOH . 
F 4 HOH A 6 606 85 HOH HOH . 
F 4 HOH A 7 607 32 HOH HOH . 
F 4 HOH A 8 608 51 HOH HOH . 
F 4 HOH A 9 609 28 HOH HOH . 
F 4 HOH A 10 610 148 HOH HOH . 
F 4 HOH A 11 611 100 HOH HOH . 
F 4 HOH A 12 612 65 HOH HOH . 
F 4 HOH A 13 613 142 HOH HOH . 
F 4 HOH A 14 614 144 HOH HOH . 
F 4 HOH A 15 615 97 HOH HOH . 
F 4 HOH A 16 616 20 HOH HOH . 
F 4 HOH A 17 617 117 HOH HOH . 
F 4 HOH A 18 618 33 HOH HOH . 
F 4 HOH A 19 619 123 HOH HOH . 
F 4 HOH A 20 620 79 HOH HOH . 
F 4 HOH A 21 621 19 HOH HOH . 
F 4 HOH A 22 622 60 HOH HOH . 
F 4 HOH A 23 623 30 HOH HOH . 
F 4 HOH A 24 624 122 HOH HOH . 
F 4 HOH A 25 625 113 HOH HOH . 
F 4 HOH A 26 626 64 HOH HOH . 
F 4 HOH A 27 627 116 HOH HOH . 
F 4 HOH A 28 628 14 HOH HOH . 
F 4 HOH A 29 629 2 HOH HOH . 
F 4 HOH A 30 630 125 HOH HOH . 
F 4 HOH A 31 631 34 HOH HOH . 
F 4 HOH A 32 632 3 HOH HOH . 
F 4 HOH A 33 633 120 HOH HOH . 
F 4 HOH A 34 634 130 HOH HOH . 
F 4 HOH A 35 635 42 HOH HOH . 
F 4 HOH A 36 636 13 HOH HOH . 
F 4 HOH A 37 637 17 HOH HOH . 
F 4 HOH A 38 638 7 HOH HOH . 
F 4 HOH A 39 639 126 HOH HOH . 
F 4 HOH A 40 640 53 HOH HOH . 
F 4 HOH A 41 641 55 HOH HOH . 
F 4 HOH A 42 642 49 HOH HOH . 
F 4 HOH A 43 643 16 HOH HOH . 
F 4 HOH A 44 644 103 HOH HOH . 
F 4 HOH A 45 645 15 HOH HOH . 
F 4 HOH A 46 646 5 HOH HOH . 
F 4 HOH A 47 647 39 HOH HOH . 
F 4 HOH A 48 648 22 HOH HOH . 
F 4 HOH A 49 649 137 HOH HOH . 
F 4 HOH A 50 650 40 HOH HOH . 
F 4 HOH A 51 651 108 HOH HOH . 
F 4 HOH A 52 652 112 HOH HOH . 
F 4 HOH A 53 653 71 HOH HOH . 
F 4 HOH A 54 654 10 HOH HOH . 
F 4 HOH A 55 655 66 HOH HOH . 
F 4 HOH A 56 656 96 HOH HOH . 
F 4 HOH A 57 657 121 HOH HOH . 
F 4 HOH A 58 658 26 HOH HOH . 
F 4 HOH A 59 659 35 HOH HOH . 
F 4 HOH A 60 660 75 HOH HOH . 
F 4 HOH A 61 661 84 HOH HOH . 
F 4 HOH A 62 662 133 HOH HOH . 
F 4 HOH A 63 663 18 HOH HOH . 
F 4 HOH A 64 664 153 HOH HOH . 
F 4 HOH A 65 665 41 HOH HOH . 
F 4 HOH A 66 666 83 HOH HOH . 
F 4 HOH A 67 667 67 HOH HOH . 
F 4 HOH A 68 668 86 HOH HOH . 
F 4 HOH A 69 669 21 HOH HOH . 
F 4 HOH A 70 670 110 HOH HOH . 
F 4 HOH A 71 671 57 HOH HOH . 
F 4 HOH A 72 672 27 HOH HOH . 
F 4 HOH A 73 673 24 HOH HOH . 
F 4 HOH A 74 674 69 HOH HOH . 
F 4 HOH A 75 675 4 HOH HOH . 
F 4 HOH A 76 676 145 HOH HOH . 
F 4 HOH A 77 677 88 HOH HOH . 
F 4 HOH A 78 678 56 HOH HOH . 
F 4 HOH A 79 679 23 HOH HOH . 
F 4 HOH A 80 680 98 HOH HOH . 
F 4 HOH A 81 681 48 HOH HOH . 
F 4 HOH A 82 682 52 HOH HOH . 
F 4 HOH A 83 683 119 HOH HOH . 
F 4 HOH A 84 684 61 HOH HOH . 
F 4 HOH A 85 685 92 HOH HOH . 
F 4 HOH A 86 686 109 HOH HOH . 
F 4 HOH A 87 687 62 HOH HOH . 
F 4 HOH A 88 688 63 HOH HOH . 
F 4 HOH A 89 689 155 HOH HOH . 
F 4 HOH A 90 690 37 HOH HOH . 
F 4 HOH A 91 691 47 HOH HOH . 
F 4 HOH A 92 692 99 HOH HOH . 
F 4 HOH A 93 693 6 HOH HOH . 
F 4 HOH A 94 694 29 HOH HOH . 
F 4 HOH A 95 695 12 HOH HOH . 
F 4 HOH A 96 696 118 HOH HOH . 
F 4 HOH A 97 697 80 HOH HOH . 
F 4 HOH A 98 698 146 HOH HOH . 
F 4 HOH A 99 699 158 HOH HOH . 
F 4 HOH A 100 700 104 HOH HOH . 
F 4 HOH A 101 701 81 HOH HOH . 
F 4 HOH A 102 702 25 HOH HOH . 
F 4 HOH A 103 703 156 HOH HOH . 
F 4 HOH A 104 704 136 HOH HOH . 
F 4 HOH A 105 705 151 HOH HOH . 
F 4 HOH A 106 706 78 HOH HOH . 
F 4 HOH A 107 707 45 HOH HOH . 
F 4 HOH A 108 708 87 HOH HOH . 
F 4 HOH A 109 709 50 HOH HOH . 
F 4 HOH A 110 710 91 HOH HOH . 
F 4 HOH A 111 711 135 HOH HOH . 
F 4 HOH A 112 712 82 HOH HOH . 
F 4 HOH A 113 713 36 HOH HOH . 
F 4 HOH A 114 714 70 HOH HOH . 
F 4 HOH A 115 715 95 HOH HOH . 
F 4 HOH A 116 716 127 HOH HOH . 
F 4 HOH A 117 717 124 HOH HOH . 
F 4 HOH A 118 718 73 HOH HOH . 
F 4 HOH A 119 719 111 HOH HOH . 
F 4 HOH A 120 720 11 HOH HOH . 
F 4 HOH A 121 721 31 HOH HOH . 
F 4 HOH A 122 722 143 HOH HOH . 
F 4 HOH A 123 723 114 HOH HOH . 
F 4 HOH A 124 724 163 HOH HOH . 
F 4 HOH A 125 725 68 HOH HOH . 
F 4 HOH A 126 726 106 HOH HOH . 
F 4 HOH A 127 727 141 HOH HOH . 
F 4 HOH A 128 728 44 HOH HOH . 
F 4 HOH A 129 729 89 HOH HOH . 
F 4 HOH A 130 730 72 HOH HOH . 
F 4 HOH A 131 731 58 HOH HOH . 
F 4 HOH A 132 732 115 HOH HOH . 
F 4 HOH A 133 733 140 HOH HOH . 
F 4 HOH A 134 734 107 HOH HOH . 
F 4 HOH A 135 735 129 HOH HOH . 
F 4 HOH A 136 736 38 HOH HOH . 
F 4 HOH A 137 737 54 HOH HOH . 
F 4 HOH A 138 738 128 HOH HOH . 
F 4 HOH A 139 739 131 HOH HOH . 
F 4 HOH A 140 740 159 HOH HOH . 
F 4 HOH A 141 741 139 HOH HOH . 
F 4 HOH A 142 742 90 HOH HOH . 
F 4 HOH A 143 743 157 HOH HOH . 
F 4 HOH A 144 744 132 HOH HOH . 
F 4 HOH A 145 745 94 HOH HOH . 
F 4 HOH A 146 746 74 HOH HOH . 
F 4 HOH A 147 747 138 HOH HOH . 
F 4 HOH A 148 748 149 HOH HOH . 
F 4 HOH A 149 749 160 HOH HOH . 
F 4 HOH A 150 750 43 HOH HOH . 
F 4 HOH A 151 751 162 HOH HOH . 
F 4 HOH A 152 752 77 HOH HOH . 
F 4 HOH A 153 753 102 HOH HOH . 
F 4 HOH A 154 754 134 HOH HOH . 
F 4 HOH A 155 755 101 HOH HOH . 
F 4 HOH A 156 756 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 9.495 -1.878 13.284 1 27.14 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . B 2 8.583 -1.906 14.349 1 32.28 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . B 2 10.295 -0.562 13.382 1 29.4 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . B 2 10.911 -0.429 14.613 1 36.25 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . B 2 9.271 0.569 13.108 1 27.43 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . B 2 10.003 1.76 12.863 1 27.96 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#