data_6IYC # _model_server_result.job_id 3bWXcCqbtvHlABvBQJgeng _model_server_result.datetime_utc '2024-11-05 03:54:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6iyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":820}' # _entry.id 6IYC # _exptl.entry_id 6IYC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IYC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 7 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 7 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 F 1 NAG A 1699 NAG 6 n F NAG 2 F 2 NAG A 1700 NAG 7 n G NAG 1 G 1 NAG A 1701 NAG 7 n G NAG 2 G 2 NAG A 1702 NAG 7 n G BMA 3 G 3 BMA A 1716 BMA 7 n G BMA 4 G 4 BMA A 1718 BMA 7 n G BMA 5 G 5 BMA A 1717 BMA 6 n H NAG 1 H 1 NAG A 1703 NAG 6 n H NAG 2 H 2 NAG A 1704 NAG 6 n I NAG 1 I 1 NAG A 1706 NAG 6 n I NAG 2 I 2 NAG A 1707 NAG 6 n J NAG 1 J 1 NAG A 1708 NAG 6 n J NAG 2 J 2 NAG A 1709 NAG 6 n K NAG 1 K 1 NAG A 1710 NAG 6 n K NAG 2 K 2 NAG A 1711 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 140 A CYS 140 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 230 A CYS 230 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 A SG CYS 586 A CYS 586 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 55 A ASN 55 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale3 A ND2 ASN 187 A ASN 187 1_555 P C1 NAG . A NAG 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 A ND2 ASN 264 A ASN 264 1_555 O C1 NAG . A NAG 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 A ND2 ASN 387 A ASN 387 1_555 L C1 NAG . A NAG 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale6 A ND2 ASN 435 A ASN 435 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale7 A ND2 ASN 464 A ASN 464 1_555 M C1 NAG . A NAG 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 A ND2 ASN 506 A ASN 506 1_555 N C1 NAG . A NAG 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 A ND2 ASN 530 A ASN 530 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 A ND2 ASN 562 A ASN 562 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale11 A ND2 ASN 573 A ASN 573 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 A ND2 ASN 580 A ASN 580 1_555 Q C1 NAG . A NAG 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale13 C CD2 LEU 214 C LEU 214 1_555 U C19 CLR . C CLR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale14 C NE1 TRP 227 C TRP 227 1_555 T C18 CLR . C CLR 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale15 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale16 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale18 G O3 BMA . G BMA 3 1_555 G C1 BMA . G BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale19 G O6 BMA . G BMA 3 1_555 G C1 BMA . G BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale20 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale21 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale22 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale23 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6IYC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 8 NAG A 1 810 1705 NAG NAG . M 8 NAG A 1 817 1712 NAG NAG . N 8 NAG A 1 818 1713 NAG NAG . O 8 NAG A 1 819 1714 NAG NAG . P 8 NAG A 1 820 1715 NAG NAG . Q 8 NAG A 1 821 1719 NAG NAG . R 9 PC1 B 1 501 501 PC1 PC1 . S 10 CLR C 1 301 301 CLR CLR . T 10 CLR C 1 302 401 CLR CLR . U 10 CLR C 1 303 501 CLR CLR . V 9 PC1 C 1 304 601 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 8 181.88 154.737 208.373 1 84.97 ? C1 NAG 820 A 1 HETATM 2 C C2 NAG . . . P 8 180.417 154.359 208.567 1 84.97 ? C2 NAG 820 A 1 HETATM 3 C C3 NAG . . . P 8 180.31 153.068 209.377 1 84.97 ? C3 NAG 820 A 1 HETATM 4 C C4 NAG . . . P 8 181.12 151.959 208.719 1 84.97 ? C4 NAG 820 A 1 HETATM 5 C C5 NAG . . . P 8 182.562 152.412 208.512 1 84.97 ? C5 NAG 820 A 1 HETATM 6 C C6 NAG . . . P 8 183.385 151.416 207.733 1 84.97 ? C6 NAG 820 A 1 HETATM 7 C C7 NAG . . . P 8 178.403 155.7 208.951 1 84.97 ? C7 NAG 820 A 1 HETATM 8 C C8 NAG . . . P 8 177.802 156.849 209.703 1 84.97 ? C8 NAG 820 A 1 HETATM 9 N N2 NAG . . . P 8 179.685 155.434 209.214 1 84.97 ? N2 NAG 820 A 1 HETATM 10 O O3 NAG . . . P 8 178.947 152.671 209.477 1 84.97 ? O3 NAG 820 A 1 HETATM 11 O O4 NAG . . . P 8 181.112 150.796 209.538 1 84.97 ? O4 NAG 820 A 1 HETATM 12 O O5 NAG . . . P 8 182.587 153.637 207.764 1 84.97 ? O5 NAG 820 A 1 HETATM 13 O O6 NAG . . . P 8 184.739 151.409 208.163 1 84.97 ? O6 NAG 820 A 1 HETATM 14 O O7 NAG . . . P 8 177.756 155.04 208.148 1 84.97 ? O7 NAG 820 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #