data_6IYK # _model_server_result.job_id hnDU2iFNFSi3wEzSAMDpug _model_server_result.datetime_utc '2024-11-03 01:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6iyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6IYK # _exptl.entry_id 6IYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.423 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[(2-nitrobenzene-1-carbonyl)sulfamoyl]adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.31 _cell.angle_gamma 90 _cell.entry_id 6IYK _cell.length_a 124.503 _cell.length_b 57.22 _cell.length_c 171.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H17 N7 O9 S' _chem_comp.formula_weight 495.423 _chem_comp.id B1U _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(2-nitrobenzene-1-carbonyl)sulfamoyl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 N7 B1U doub 70 n n C14 C15 B1U doub 71 n y C14 C13 B1U sing 72 n y C15 C16 B1U sing 73 n y N7 C13 B1U sing 74 n n N7 O8 B1U sing 75 n n C13 C12 B1U doub 76 n y C16 C17 B1U doub 77 n y N3 C4 B1U sing 78 n n C17 C12 B1U sing 79 n y C12 C11 B1U sing 80 n n N4 C3 B1U sing 81 n y N4 C5 B1U doub 82 n y C4 C3 B1U doub 83 n y C4 N1 B1U sing 84 n y C3 C2 B1U sing 85 n y O2 C8 B1U sing 86 n n C11 N6 B1U sing 87 n n C11 O7 B1U doub 88 n n N6 SAT B1U sing 89 n n C5 N5 B1U sing 90 n y N1 C1 B1U doub 91 n y C8 C7 B1U sing 92 n n C8 C9 B1U sing 93 n n C10 C9 B1U sing 94 n n C10 O4 B1U sing 95 n n C2 N5 B1U sing 96 n y C2 N2 B1U doub 97 n y N5 C6 B1U sing 98 n n O6 SAT B1U doub 99 n n C7 C6 B1U sing 100 n n C7 O3 B1U sing 101 n n C1 N2 B1U sing 102 n y C9 O1 B1U sing 103 n n SAT O4 B1U sing 104 n n SAT O5 B1U doub 105 n n C6 O1 B1U sing 106 n n C14 H1 B1U sing 107 n n C15 H2 B1U sing 108 n n C16 H3 B1U sing 109 n n C17 H4 B1U sing 110 n n N6 H5 B1U sing 111 n n C10 H6 B1U sing 112 n n C10 H7 B1U sing 113 n n C9 H8 B1U sing 114 n n C8 H9 B1U sing 115 n n O2 H10 B1U sing 116 n n C7 H11 B1U sing 117 n n O3 H12 B1U sing 118 n n C6 H13 B1U sing 119 n n C5 H14 B1U sing 120 n n C1 H15 B1U sing 121 n n N3 H16 B1U sing 122 n n N3 H17 B1U sing 123 n n # _atom_sites.entry_id 6IYK _atom_sites.fract_transf_matrix[1][1] 0.008032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000888 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B1U A 1 601 601 B1U UNK . D 2 B1U B 1 601 601 B1U UNK . E 3 HOH A 1 701 155 HOH HOH . E 3 HOH A 2 702 157 HOH HOH . E 3 HOH A 3 703 161 HOH HOH . E 3 HOH A 4 704 137 HOH HOH . E 3 HOH A 5 705 14 HOH HOH . E 3 HOH A 6 706 94 HOH HOH . E 3 HOH A 7 707 2 HOH HOH . E 3 HOH A 8 708 15 HOH HOH . E 3 HOH A 9 709 131 HOH HOH . E 3 HOH A 10 710 129 HOH HOH . E 3 HOH A 11 711 33 HOH HOH . E 3 HOH A 12 712 70 HOH HOH . E 3 HOH A 13 713 162 HOH HOH . E 3 HOH A 14 714 138 HOH HOH . E 3 HOH A 15 715 158 HOH HOH . E 3 HOH A 16 716 18 HOH HOH . E 3 HOH A 17 717 79 HOH HOH . E 3 HOH A 18 718 81 HOH HOH . E 3 HOH A 19 719 144 HOH HOH . E 3 HOH A 20 720 149 HOH HOH . E 3 HOH A 21 721 46 HOH HOH . E 3 HOH A 22 722 65 HOH HOH . E 3 HOH A 23 723 114 HOH HOH . E 3 HOH A 24 724 134 HOH HOH . E 3 HOH A 25 725 55 HOH HOH . E 3 HOH A 26 726 40 HOH HOH . E 3 HOH A 27 727 143 HOH HOH . E 3 HOH A 28 728 132 HOH HOH . E 3 HOH A 29 729 8 HOH HOH . E 3 HOH A 30 730 59 HOH HOH . E 3 HOH A 31 731 67 HOH HOH . E 3 HOH A 32 732 50 HOH HOH . E 3 HOH A 33 733 82 HOH HOH . E 3 HOH A 34 734 111 HOH HOH . E 3 HOH A 35 735 69 HOH HOH . E 3 HOH A 36 736 3 HOH HOH . E 3 HOH A 37 737 25 HOH HOH . E 3 HOH A 38 738 17 HOH HOH . E 3 HOH A 39 739 72 HOH HOH . E 3 HOH A 40 740 30 HOH HOH . E 3 HOH A 41 741 9 HOH HOH . E 3 HOH A 42 742 21 HOH HOH . E 3 HOH A 43 743 84 HOH HOH . E 3 HOH A 44 744 32 HOH HOH . E 3 HOH A 45 745 116 HOH HOH . E 3 HOH A 46 746 85 HOH HOH . E 3 HOH A 47 747 145 HOH HOH . E 3 HOH A 48 748 41 HOH HOH . E 3 HOH A 49 749 96 HOH HOH . E 3 HOH A 50 750 113 HOH HOH . E 3 HOH A 51 751 86 HOH HOH . E 3 HOH A 52 752 68 HOH HOH . E 3 HOH A 53 753 35 HOH HOH . E 3 HOH A 54 754 167 HOH HOH . E 3 HOH A 55 755 108 HOH HOH . E 3 HOH A 56 756 12 HOH HOH . E 3 HOH A 57 757 39 HOH HOH . E 3 HOH A 58 758 22 HOH HOH . E 3 HOH A 59 759 153 HOH HOH . E 3 HOH A 60 760 147 HOH HOH . E 3 HOH A 61 761 90 HOH HOH . E 3 HOH A 62 762 92 HOH HOH . E 3 HOH A 63 763 97 HOH HOH . E 3 HOH A 64 764 128 HOH HOH . E 3 HOH A 65 765 83 HOH HOH . E 3 HOH A 66 766 112 HOH HOH . E 3 HOH A 67 767 54 HOH HOH . E 3 HOH A 68 768 56 HOH HOH . E 3 HOH A 69 769 141 HOH HOH . E 3 HOH A 70 770 110 HOH HOH . E 3 HOH A 71 771 156 HOH HOH . E 3 HOH A 72 772 11 HOH HOH . E 3 HOH A 73 773 154 HOH HOH . E 3 HOH A 74 774 142 HOH HOH . E 3 HOH A 75 775 126 HOH HOH . E 3 HOH A 76 776 124 HOH HOH . E 3 HOH A 77 777 6 HOH HOH . E 3 HOH A 78 778 163 HOH HOH . E 3 HOH A 79 779 164 HOH HOH . E 3 HOH A 80 780 125 HOH HOH . E 3 HOH A 81 781 122 HOH HOH . E 3 HOH A 82 782 159 HOH HOH . E 3 HOH A 83 783 165 HOH HOH . E 3 HOH A 84 784 150 HOH HOH . E 3 HOH A 85 785 136 HOH HOH . E 3 HOH A 86 786 135 HOH HOH . E 3 HOH A 87 787 48 HOH HOH . E 3 HOH A 88 788 139 HOH HOH . E 3 HOH A 89 789 121 HOH HOH . E 3 HOH A 90 790 166 HOH HOH . E 3 HOH A 91 791 160 HOH HOH . E 3 HOH A 92 792 130 HOH HOH . E 3 HOH A 93 793 119 HOH HOH . E 3 HOH A 94 794 140 HOH HOH . E 3 HOH A 95 795 146 HOH HOH . E 3 HOH A 96 796 123 HOH HOH . F 3 HOH B 1 701 186 HOH HOH . F 3 HOH B 2 702 151 HOH HOH . F 3 HOH B 3 703 31 HOH HOH . F 3 HOH B 4 704 170 HOH HOH . F 3 HOH B 5 705 19 HOH HOH . F 3 HOH B 6 706 171 HOH HOH . F 3 HOH B 7 707 4 HOH HOH . F 3 HOH B 8 708 57 HOH HOH . F 3 HOH B 9 709 26 HOH HOH . F 3 HOH B 10 710 175 HOH HOH . F 3 HOH B 11 711 78 HOH HOH . F 3 HOH B 12 712 28 HOH HOH . F 3 HOH B 13 713 23 HOH HOH . F 3 HOH B 14 714 181 HOH HOH . F 3 HOH B 15 715 177 HOH HOH . F 3 HOH B 16 716 107 HOH HOH . F 3 HOH B 17 717 24 HOH HOH . F 3 HOH B 18 718 27 HOH HOH . F 3 HOH B 19 719 89 HOH HOH . F 3 HOH B 20 720 180 HOH HOH . F 3 HOH B 21 721 117 HOH HOH . F 3 HOH B 22 722 109 HOH HOH . F 3 HOH B 23 723 88 HOH HOH . F 3 HOH B 24 724 20 HOH HOH . F 3 HOH B 25 725 105 HOH HOH . F 3 HOH B 26 726 66 HOH HOH . F 3 HOH B 27 727 148 HOH HOH . F 3 HOH B 28 728 71 HOH HOH . F 3 HOH B 29 729 1 HOH HOH . F 3 HOH B 30 730 75 HOH HOH . F 3 HOH B 31 731 29 HOH HOH . F 3 HOH B 32 732 63 HOH HOH . F 3 HOH B 33 733 37 HOH HOH . F 3 HOH B 34 734 13 HOH HOH . F 3 HOH B 35 735 77 HOH HOH . F 3 HOH B 36 736 36 HOH HOH . F 3 HOH B 37 737 52 HOH HOH . F 3 HOH B 38 738 73 HOH HOH . F 3 HOH B 39 739 58 HOH HOH . F 3 HOH B 40 740 104 HOH HOH . F 3 HOH B 41 741 10 HOH HOH . F 3 HOH B 42 742 99 HOH HOH . F 3 HOH B 43 743 34 HOH HOH . F 3 HOH B 44 744 5 HOH HOH . F 3 HOH B 45 745 87 HOH HOH . F 3 HOH B 46 746 127 HOH HOH . F 3 HOH B 47 747 172 HOH HOH . F 3 HOH B 48 748 44 HOH HOH . F 3 HOH B 49 749 49 HOH HOH . F 3 HOH B 50 750 64 HOH HOH . F 3 HOH B 51 751 100 HOH HOH . F 3 HOH B 52 752 106 HOH HOH . F 3 HOH B 53 753 93 HOH HOH . F 3 HOH B 54 754 152 HOH HOH . F 3 HOH B 55 755 60 HOH HOH . F 3 HOH B 56 756 103 HOH HOH . F 3 HOH B 57 757 7 HOH HOH . F 3 HOH B 58 758 76 HOH HOH . F 3 HOH B 59 759 74 HOH HOH . F 3 HOH B 60 760 38 HOH HOH . F 3 HOH B 61 761 95 HOH HOH . F 3 HOH B 62 762 185 HOH HOH . F 3 HOH B 63 763 43 HOH HOH . F 3 HOH B 64 764 187 HOH HOH . F 3 HOH B 65 765 42 HOH HOH . F 3 HOH B 66 766 47 HOH HOH . F 3 HOH B 67 767 16 HOH HOH . F 3 HOH B 68 768 101 HOH HOH . F 3 HOH B 69 769 179 HOH HOH . F 3 HOH B 70 770 61 HOH HOH . F 3 HOH B 71 771 45 HOH HOH . F 3 HOH B 72 772 62 HOH HOH . F 3 HOH B 73 773 51 HOH HOH . F 3 HOH B 74 774 115 HOH HOH . F 3 HOH B 75 775 183 HOH HOH . F 3 HOH B 76 776 91 HOH HOH . F 3 HOH B 77 777 182 HOH HOH . F 3 HOH B 78 778 118 HOH HOH . F 3 HOH B 79 779 173 HOH HOH . F 3 HOH B 80 780 102 HOH HOH . F 3 HOH B 81 781 53 HOH HOH . F 3 HOH B 82 782 188 HOH HOH . F 3 HOH B 83 783 184 HOH HOH . F 3 HOH B 84 784 133 HOH HOH . F 3 HOH B 85 785 120 HOH HOH . F 3 HOH B 86 786 178 HOH HOH . F 3 HOH B 87 787 168 HOH HOH . F 3 HOH B 88 788 98 HOH HOH . F 3 HOH B 89 789 176 HOH HOH . F 3 HOH B 90 790 169 HOH HOH . F 3 HOH B 91 791 80 HOH HOH . F 3 HOH B 92 792 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 B1U . . . D 2 -28.195 -1.139 68 1 53.52 ? O8 B1U 601 B 1 HETATM 2 N N7 B1U . . . D 2 -28.885 -0.077 67.326 1 43.51 ? N7 B1U 601 B 1 HETATM 3 O O9 B1U . . . D 2 -30.145 -0.246 66.802 1 51.54 ? O9 B1U 601 B 1 HETATM 4 C C13 B1U . . . D 2 -28.446 1.142 67.288 1 36.74 ? C13 B1U 601 B 1 HETATM 5 C C14 B1U . . . D 2 -28.904 1.876 68.359 1 35.65 ? C14 B1U 601 B 1 HETATM 6 C C15 B1U . . . D 2 -28.585 3.212 68.388 1 37.03 ? C15 B1U 601 B 1 HETATM 7 C C16 B1U . . . D 2 -27.837 3.749 67.344 1 36.8 ? C16 B1U 601 B 1 HETATM 8 C C17 B1U . . . D 2 -27.405 2.983 66.26 1 34.33 ? C17 B1U 601 B 1 HETATM 9 C C12 B1U . . . D 2 -27.701 1.644 66.175 1 32.05 ? C12 B1U 601 B 1 HETATM 10 C C11 B1U . . . D 2 -27.211 0.952 65.022 1 29.72 ? C11 B1U 601 B 1 HETATM 11 O O7 B1U . . . D 2 -26.794 1.546 64.03 1 27.94 ? O7 B1U 601 B 1 HETATM 12 N N6 B1U . . . D 2 -27.222 -0.393 65.056 1 28.21 ? N6 B1U 601 B 1 HETATM 13 S SAT B1U . . . D 2 -26.721 -1.311 63.83 1 26.33 ? SAT B1U 601 B 1 HETATM 14 O O5 B1U . . . D 2 -27.563 -1.174 62.587 1 24.78 ? O5 B1U 601 B 1 HETATM 15 O O6 B1U . . . D 2 -26.825 -2.721 64.382 1 23.81 ? O6 B1U 601 B 1 HETATM 16 O O4 B1U . . . D 2 -25.312 -0.934 63.406 1 26.58 ? O4 B1U 601 B 1 HETATM 17 C C10 B1U . . . D 2 -24.164 -1.004 64.211 1 24.48 ? C10 B1U 601 B 1 HETATM 18 C C9 B1U . . . D 2 -23.041 -0.143 63.549 1 23.01 ? C9 B1U 601 B 1 HETATM 19 O O1 B1U . . . D 2 -23.524 1.155 63.12 1 22.81 ? O1 B1U 601 B 1 HETATM 20 C C8 B1U . . . D 2 -22.003 0.231 64.586 1 21.68 ? C8 B1U 601 B 1 HETATM 21 O O2 B1U . . . D 2 -21.169 -0.895 64.939 1 20.61 ? O2 B1U 601 B 1 HETATM 22 C C7 B1U . . . D 2 -21.255 1.282 63.829 1 22.1 ? C7 B1U 601 B 1 HETATM 23 O O3 B1U . . . D 2 -20.502 0.746 62.755 1 20.33 ? O3 B1U 601 B 1 HETATM 24 C C6 B1U . . . D 2 -22.402 2.08 63.262 1 22.86 ? C6 B1U 601 B 1 HETATM 25 N N5 B1U . . . D 2 -22.834 3.216 64.092 1 24.17 ? N5 B1U 601 B 1 HETATM 26 C C5 B1U . . . D 2 -23.947 3.289 64.825 1 25.73 ? C5 B1U 601 B 1 HETATM 27 N N4 B1U . . . D 2 -23.998 4.472 65.415 1 25.68 ? N4 B1U 601 B 1 HETATM 28 C C3 B1U . . . D 2 -22.91 5.157 65.033 1 25.5 ? C3 B1U 601 B 1 HETATM 29 C C2 B1U . . . D 2 -22.197 4.374 64.204 1 25.15 ? C2 B1U 601 B 1 HETATM 30 N N2 B1U . . . D 2 -21.033 4.792 63.677 1 23.49 ? N2 B1U 601 B 1 HETATM 31 C C1 B1U . . . D 2 -20.591 6.08 63.966 1 23.18 ? C1 B1U 601 B 1 HETATM 32 N N1 B1U . . . D 2 -21.357 6.912 64.816 1 24.01 ? N1 B1U 601 B 1 HETATM 33 C C4 B1U . . . D 2 -22.493 6.406 65.319 1 24.61 ? C4 B1U 601 B 1 HETATM 34 N N3 B1U . . . D 2 -23.27 7.137 66.101 1 23.19 ? N3 B1U 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #