data_6IZF # _model_server_result.job_id -M0-IH8MqePCe03fDi8EjA _model_server_result.datetime_utc '2024-11-21 14:12:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6izf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6IZF # _exptl.entry_id 6IZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IZF _cell.length_a 127.381 _cell.length_b 127.381 _cell.length_c 102.167 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 127.381 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 63.6905 110.315182 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 74 A GLY 74 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A O GLY 74 A GLY 74 1_555 B CA CA . A CA 401 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 B CA CA . A CA 401 1_555 I O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 B CA CA . A CA 401 1_555 I O HOH . A HOH 539 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc5 B CA CA . A CA 401 1_555 I O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 B CA CA . A CA 401 1_555 I O HOH . A HOH 557 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6IZF _atom_sites.fract_transf_matrix[1][1] 0.00785 _atom_sites.fract_transf_matrix[1][2] 0.004532 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 3 CL A 1 402 1 CL CL . D 3 CL A 1 403 2 CL CL . E 3 CL A 1 404 3 CL CL . F 3 CL A 1 405 4 CL CL . G 3 CL A 1 406 5 CL CL . H 4 BQ9 A 1 407 1 BQ9 BQ9 . I 5 HOH A 1 501 11 HOH HOH . I 5 HOH A 2 502 10 HOH HOH . I 5 HOH A 3 503 24 HOH HOH . I 5 HOH A 4 504 75 HOH HOH . I 5 HOH A 5 505 16 HOH HOH . I 5 HOH A 6 506 12 HOH HOH . I 5 HOH A 7 507 58 HOH HOH . I 5 HOH A 8 508 2 HOH HOH . I 5 HOH A 9 509 1 HOH HOH . I 5 HOH A 10 510 9 HOH HOH . I 5 HOH A 11 511 18 HOH HOH . I 5 HOH A 12 512 15 HOH HOH . I 5 HOH A 13 513 7 HOH HOH . I 5 HOH A 14 514 3 HOH HOH . I 5 HOH A 15 515 40 HOH HOH . I 5 HOH A 16 516 20 HOH HOH . I 5 HOH A 17 517 25 HOH HOH . I 5 HOH A 18 518 21 HOH HOH . I 5 HOH A 19 519 23 HOH HOH . I 5 HOH A 20 520 22 HOH HOH . I 5 HOH A 21 521 8 HOH HOH . I 5 HOH A 22 522 5 HOH HOH . I 5 HOH A 23 523 99 HOH HOH . I 5 HOH A 24 524 17 HOH HOH . I 5 HOH A 25 525 30 HOH HOH . I 5 HOH A 26 526 68 HOH HOH . I 5 HOH A 27 527 85 HOH HOH . I 5 HOH A 28 528 35 HOH HOH . I 5 HOH A 29 529 28 HOH HOH . I 5 HOH A 30 530 50 HOH HOH . I 5 HOH A 31 531 39 HOH HOH . I 5 HOH A 32 532 4 HOH HOH . I 5 HOH A 33 533 26 HOH HOH . I 5 HOH A 34 534 19 HOH HOH . I 5 HOH A 35 535 101 HOH HOH . I 5 HOH A 36 536 42 HOH HOH . I 5 HOH A 37 537 6 HOH HOH . I 5 HOH A 38 538 41 HOH HOH . I 5 HOH A 39 539 32 HOH HOH . I 5 HOH A 40 540 43 HOH HOH . I 5 HOH A 41 541 98 HOH HOH . I 5 HOH A 42 542 37 HOH HOH . I 5 HOH A 43 543 91 HOH HOH . I 5 HOH A 44 544 13 HOH HOH . I 5 HOH A 45 545 74 HOH HOH . I 5 HOH A 46 546 95 HOH HOH . I 5 HOH A 47 547 49 HOH HOH . I 5 HOH A 48 548 76 HOH HOH . I 5 HOH A 49 549 69 HOH HOH . I 5 HOH A 50 550 73 HOH HOH . I 5 HOH A 51 551 33 HOH HOH . I 5 HOH A 52 552 47 HOH HOH . I 5 HOH A 53 553 34 HOH HOH . I 5 HOH A 54 554 38 HOH HOH . I 5 HOH A 55 555 55 HOH HOH . I 5 HOH A 56 556 66 HOH HOH . I 5 HOH A 57 557 67 HOH HOH . I 5 HOH A 58 558 56 HOH HOH . I 5 HOH A 59 559 57 HOH HOH . I 5 HOH A 60 560 27 HOH HOH . I 5 HOH A 61 561 90 HOH HOH . I 5 HOH A 62 562 80 HOH HOH . I 5 HOH A 63 563 44 HOH HOH . I 5 HOH A 64 564 97 HOH HOH . I 5 HOH A 65 565 14 HOH HOH . I 5 HOH A 66 566 104 HOH HOH . I 5 HOH A 67 567 96 HOH HOH . I 5 HOH A 68 568 103 HOH HOH . I 5 HOH A 69 569 71 HOH HOH . I 5 HOH A 70 570 36 HOH HOH . I 5 HOH A 71 571 45 HOH HOH . I 5 HOH A 72 572 105 HOH HOH . I 5 HOH A 73 573 102 HOH HOH . I 5 HOH A 74 574 31 HOH HOH . I 5 HOH A 75 575 53 HOH HOH . I 5 HOH A 76 576 92 HOH HOH . I 5 HOH A 77 577 82 HOH HOH . I 5 HOH A 78 578 94 HOH HOH . I 5 HOH A 79 579 79 HOH HOH . I 5 HOH A 80 580 60 HOH HOH . I 5 HOH A 81 581 89 HOH HOH . I 5 HOH A 82 582 51 HOH HOH . I 5 HOH A 83 583 48 HOH HOH . I 5 HOH A 84 584 54 HOH HOH . I 5 HOH A 85 585 52 HOH HOH . I 5 HOH A 86 586 61 HOH HOH . I 5 HOH A 87 587 100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 63.69 _atom_site.Cartn_y 36.768 _atom_site.Cartn_z 32.574 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 29.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #