data_6IZF # _model_server_result.job_id e9IeMocI_jAUaUcxqGhEsA _model_server_result.datetime_utc '2024-11-21 13:37:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6izf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 6IZF # _exptl.entry_id 6IZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.704 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-1-(dodecanoyloxy)-3-hydroxypropan-2-yl (5E,8E,11E)-tetradeca-5,8,11-trienoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IZF _cell.length_a 127.381 _cell.length_b 127.381 _cell.length_c 102.167 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 127.381 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 63.6905 110.315182 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 74 A GLY 74 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A O GLY 74 A GLY 74 1_555 B CA CA . A CA 401 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 B CA CA . A CA 401 1_555 I O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 B CA CA . A CA 401 1_555 I O HOH . A HOH 539 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc5 B CA CA . A CA 401 1_555 I O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 B CA CA . A CA 401 1_555 I O HOH . A HOH 557 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C29 H50 O5' _chem_comp.formula_weight 478.704 _chem_comp.id BQ9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-1-(dodecanoyloxy)-3-hydroxypropan-2-yl (5E,8E,11E)-tetradeca-5,8,11-trienoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C11 BQ9 doub 70 n n C7 C8 BQ9 sing 71 n n C7 O13 BQ9 sing 72 n n C11 C31 BQ9 sing 73 n n C11 O18 BQ9 sing 74 n n C8 C9 BQ9 sing 75 n n C8 O16 BQ9 sing 76 n n C9 O18 BQ9 sing 77 n n C31 C32 BQ9 sing 78 n n C32 C33 BQ9 sing 79 n n C37 C38 BQ9 sing 80 n n C37 C36 BQ9 sing 81 n n C35 C36 BQ9 sing 82 n n C35 C34 BQ9 sing 83 n n C41 C40 BQ9 sing 84 n n C12 C10 BQ9 sing 85 n n C12 C13 BQ9 sing 86 n n O16 C10 BQ9 sing 87 n n C39 C38 BQ9 sing 88 n n C39 C40 BQ9 sing 89 n n C33 C34 BQ9 sing 90 n n C10 O17 BQ9 doub 91 n n C14 C13 BQ9 sing 92 n n C14 C15 BQ9 sing 93 n n C15 C16 BQ9 doub 94 e n C16 C17 BQ9 sing 95 n n C18 C17 BQ9 sing 96 n n C18 C19 BQ9 doub 97 e n C22 C23 BQ9 sing 98 n n C22 C21 BQ9 doub 99 e n C23 C24 BQ9 sing 100 n n C20 C21 BQ9 sing 101 n n C20 C19 BQ9 sing 102 n n C12 H1 BQ9 sing 103 n n C12 H2 BQ9 sing 104 n n C13 H3 BQ9 sing 105 n n C13 H4 BQ9 sing 106 n n C14 H5 BQ9 sing 107 n n C14 H6 BQ9 sing 108 n n C15 H7 BQ9 sing 109 n n C16 H8 BQ9 sing 110 n n C17 H9 BQ9 sing 111 n n C17 H10 BQ9 sing 112 n n C18 H11 BQ9 sing 113 n n C19 H12 BQ9 sing 114 n n C20 H13 BQ9 sing 115 n n C20 H14 BQ9 sing 116 n n C21 H15 BQ9 sing 117 n n C22 H16 BQ9 sing 118 n n C23 H17 BQ9 sing 119 n n C23 H18 BQ9 sing 120 n n C24 H19 BQ9 sing 121 n n C24 H20 BQ9 sing 122 n n C24 H21 BQ9 sing 123 n n C31 H22 BQ9 sing 124 n n C31 H23 BQ9 sing 125 n n C32 H24 BQ9 sing 126 n n C32 H25 BQ9 sing 127 n n C33 H26 BQ9 sing 128 n n C33 H27 BQ9 sing 129 n n C34 H28 BQ9 sing 130 n n C34 H29 BQ9 sing 131 n n C35 H30 BQ9 sing 132 n n C35 H31 BQ9 sing 133 n n C36 H32 BQ9 sing 134 n n C36 H33 BQ9 sing 135 n n C37 H34 BQ9 sing 136 n n C37 H35 BQ9 sing 137 n n C38 H36 BQ9 sing 138 n n C38 H37 BQ9 sing 139 n n C39 H38 BQ9 sing 140 n n C39 H39 BQ9 sing 141 n n C40 H40 BQ9 sing 142 n n C40 H41 BQ9 sing 143 n n C41 H42 BQ9 sing 144 n n C41 H43 BQ9 sing 145 n n C41 H44 BQ9 sing 146 n n C7 H45 BQ9 sing 147 n n C7 H46 BQ9 sing 148 n n C8 H47 BQ9 sing 149 n n C9 H48 BQ9 sing 150 n n C9 H49 BQ9 sing 151 n n O13 H50 BQ9 sing 152 n n # _atom_sites.entry_id 6IZF _atom_sites.fract_transf_matrix[1][1] 0.00785 _atom_sites.fract_transf_matrix[1][2] 0.004532 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 3 CL A 1 402 1 CL CL . D 3 CL A 1 403 2 CL CL . E 3 CL A 1 404 3 CL CL . F 3 CL A 1 405 4 CL CL . G 3 CL A 1 406 5 CL CL . H 4 BQ9 A 1 407 1 BQ9 BQ9 . I 5 HOH A 1 501 11 HOH HOH . I 5 HOH A 2 502 10 HOH HOH . I 5 HOH A 3 503 24 HOH HOH . I 5 HOH A 4 504 75 HOH HOH . I 5 HOH A 5 505 16 HOH HOH . I 5 HOH A 6 506 12 HOH HOH . I 5 HOH A 7 507 58 HOH HOH . I 5 HOH A 8 508 2 HOH HOH . I 5 HOH A 9 509 1 HOH HOH . I 5 HOH A 10 510 9 HOH HOH . I 5 HOH A 11 511 18 HOH HOH . I 5 HOH A 12 512 15 HOH HOH . I 5 HOH A 13 513 7 HOH HOH . I 5 HOH A 14 514 3 HOH HOH . I 5 HOH A 15 515 40 HOH HOH . I 5 HOH A 16 516 20 HOH HOH . I 5 HOH A 17 517 25 HOH HOH . I 5 HOH A 18 518 21 HOH HOH . I 5 HOH A 19 519 23 HOH HOH . I 5 HOH A 20 520 22 HOH HOH . I 5 HOH A 21 521 8 HOH HOH . I 5 HOH A 22 522 5 HOH HOH . I 5 HOH A 23 523 99 HOH HOH . I 5 HOH A 24 524 17 HOH HOH . I 5 HOH A 25 525 30 HOH HOH . I 5 HOH A 26 526 68 HOH HOH . I 5 HOH A 27 527 85 HOH HOH . I 5 HOH A 28 528 35 HOH HOH . I 5 HOH A 29 529 28 HOH HOH . I 5 HOH A 30 530 50 HOH HOH . I 5 HOH A 31 531 39 HOH HOH . I 5 HOH A 32 532 4 HOH HOH . I 5 HOH A 33 533 26 HOH HOH . I 5 HOH A 34 534 19 HOH HOH . I 5 HOH A 35 535 101 HOH HOH . I 5 HOH A 36 536 42 HOH HOH . I 5 HOH A 37 537 6 HOH HOH . I 5 HOH A 38 538 41 HOH HOH . I 5 HOH A 39 539 32 HOH HOH . I 5 HOH A 40 540 43 HOH HOH . I 5 HOH A 41 541 98 HOH HOH . I 5 HOH A 42 542 37 HOH HOH . I 5 HOH A 43 543 91 HOH HOH . I 5 HOH A 44 544 13 HOH HOH . I 5 HOH A 45 545 74 HOH HOH . I 5 HOH A 46 546 95 HOH HOH . I 5 HOH A 47 547 49 HOH HOH . I 5 HOH A 48 548 76 HOH HOH . I 5 HOH A 49 549 69 HOH HOH . I 5 HOH A 50 550 73 HOH HOH . I 5 HOH A 51 551 33 HOH HOH . I 5 HOH A 52 552 47 HOH HOH . I 5 HOH A 53 553 34 HOH HOH . I 5 HOH A 54 554 38 HOH HOH . I 5 HOH A 55 555 55 HOH HOH . I 5 HOH A 56 556 66 HOH HOH . I 5 HOH A 57 557 67 HOH HOH . I 5 HOH A 58 558 56 HOH HOH . I 5 HOH A 59 559 57 HOH HOH . I 5 HOH A 60 560 27 HOH HOH . I 5 HOH A 61 561 90 HOH HOH . I 5 HOH A 62 562 80 HOH HOH . I 5 HOH A 63 563 44 HOH HOH . I 5 HOH A 64 564 97 HOH HOH . I 5 HOH A 65 565 14 HOH HOH . I 5 HOH A 66 566 104 HOH HOH . I 5 HOH A 67 567 96 HOH HOH . I 5 HOH A 68 568 103 HOH HOH . I 5 HOH A 69 569 71 HOH HOH . I 5 HOH A 70 570 36 HOH HOH . I 5 HOH A 71 571 45 HOH HOH . I 5 HOH A 72 572 105 HOH HOH . I 5 HOH A 73 573 102 HOH HOH . I 5 HOH A 74 574 31 HOH HOH . I 5 HOH A 75 575 53 HOH HOH . I 5 HOH A 76 576 92 HOH HOH . I 5 HOH A 77 577 82 HOH HOH . I 5 HOH A 78 578 94 HOH HOH . I 5 HOH A 79 579 79 HOH HOH . I 5 HOH A 80 580 60 HOH HOH . I 5 HOH A 81 581 89 HOH HOH . I 5 HOH A 82 582 51 HOH HOH . I 5 HOH A 83 583 48 HOH HOH . I 5 HOH A 84 584 54 HOH HOH . I 5 HOH A 85 585 52 HOH HOH . I 5 HOH A 86 586 61 HOH HOH . I 5 HOH A 87 587 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 BQ9 . . . H 4 59.605 22.022 44.078 1 123.42 ? C10 BQ9 407 A 1 HETATM 2 C C11 BQ9 . . . H 4 62.833 21.747 41.95 1 99.27 ? C11 BQ9 407 A 1 HETATM 3 C C12 BQ9 . . . H 4 59.514 23.417 43.419 1 103.58 ? C12 BQ9 407 A 1 HETATM 4 C C13 BQ9 . . . H 4 60.067 24.452 44.419 1 86.53 ? C13 BQ9 407 A 1 HETATM 5 C C14 BQ9 . . . H 4 59.215 25.749 44.383 1 73.25 ? C14 BQ9 407 A 1 HETATM 6 C C15 BQ9 . . . H 4 59.36 26.502 45.727 1 67.94 ? C15 BQ9 407 A 1 HETATM 7 C C16 BQ9 . . . H 4 58.962 27.781 45.832 1 74.1 ? C16 BQ9 407 A 1 HETATM 8 C C17 BQ9 . . . H 4 59.108 28.526 47.181 1 79.02 ? C17 BQ9 407 A 1 HETATM 9 C C18 BQ9 . . . H 4 59.77 29.913 46.956 1 81.69 ? C18 BQ9 407 A 1 HETATM 10 C C19 BQ9 . . . H 4 59.267 31.008 47.548 1 81.6 ? C19 BQ9 407 A 1 HETATM 11 C C20 BQ9 . . . H 4 59.945 32.391 47.313 1 80.49 ? C20 BQ9 407 A 1 HETATM 12 C C21 BQ9 . . . H 4 58.885 33.524 47.406 1 73.47 ? C21 BQ9 407 A 1 HETATM 13 C C22 BQ9 . . . H 4 59.211 34.785 47.068 1 73.4 ? C22 BQ9 407 A 1 HETATM 14 C C23 BQ9 . . . H 4 58.146 35.914 47.16 1 74.07 ? C23 BQ9 407 A 1 HETATM 15 C C24 BQ9 . . . H 4 58.784 37.187 47.783 1 79.42 ? C24 BQ9 407 A 1 HETATM 16 C C31 BQ9 . . . H 4 63.996 22.562 42.552 1 89.85 ? C31 BQ9 407 A 1 HETATM 17 C C32 BQ9 . . . H 4 63.514 23.958 42.985 1 86.32 ? C32 BQ9 407 A 1 HETATM 18 C C33 BQ9 . . . H 4 64.711 24.733 43.601 1 82.33 ? C33 BQ9 407 A 1 HETATM 19 C C34 BQ9 . . . H 4 64.187 25.952 44.39 1 79.86 ? C34 BQ9 407 A 1 HETATM 20 C C35 BQ9 . . . H 4 63.764 27.062 43.403 1 73.55 ? C35 BQ9 407 A 1 HETATM 21 C C36 BQ9 . . . H 4 64.108 28.44 44.007 1 68.17 ? C36 BQ9 407 A 1 HETATM 22 C C37 BQ9 . . . H 4 63.674 29.542 43.039 1 68.96 ? C37 BQ9 407 A 1 HETATM 23 C C38 BQ9 . . . H 4 63.954 30.913 43.688 1 72.04 ? C38 BQ9 407 A 1 HETATM 24 C C39 BQ9 . . . H 4 62.749 31.846 43.495 1 69.75 ? C39 BQ9 407 A 1 HETATM 25 C C40 BQ9 . . . H 4 62.976 33.124 44.328 1 74.54 ? C40 BQ9 407 A 1 HETATM 26 C C41 BQ9 . . . H 4 63.19 34.332 43.385 1 69.62 ? C41 BQ9 407 A 1 HETATM 27 C C7 BQ9 . . . H 4 58.834 19.31 41.686 1 85.93 ? C7 BQ9 407 A 1 HETATM 28 C C8 BQ9 . . . H 4 59.63 20.527 42.177 1 100.53 ? C8 BQ9 407 A 1 HETATM 29 C C9 BQ9 . . . H 4 61.111 20.117 42.181 1 102.55 ? C9 BQ9 407 A 1 HETATM 30 O O13 BQ9 . . . H 4 59.101 18.208 42.546 1 80.42 ? O13 BQ9 407 A 1 HETATM 31 O O16 BQ9 . . . H 4 59.145 20.841 43.448 1 117.51 ? O16 BQ9 407 A 1 HETATM 32 O O17 BQ9 . . . H 4 60.074 21.934 45.16 1 138.47 ? O17 BQ9 407 A 1 HETATM 33 O O18 BQ9 . . . H 4 61.936 21.08 42.812 1 109.94 ? O18 BQ9 407 A 1 HETATM 34 O O19 BQ9 . . . H 4 62.699 21.673 40.769 1 99.88 ? O19 BQ9 407 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #