data_6IZM # _model_server_result.job_id VNkTgkkrRl_64UX9ZCMOMA _model_server_result.datetime_utc '2024-11-22 16:46:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6izm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6IZM # _exptl.entry_id 6IZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.431 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[[6-(2,6-dimethylpyridin-3-yl)oxy-1-methyl-benzimidazol-2-yl]methoxy]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.51 _cell.angle_gamma 90 _cell.entry_id 6IZM _cell.length_a 39.012 _cell.length_b 54.266 _cell.length_c 66.727 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H21 N3 O4' _chem_comp.formula_weight 403.431 _chem_comp.id B0X _chem_comp.mon_nstd_flag . _chem_comp.name '3-[[6-(2,6-dimethylpyridin-3-yl)oxy-1-methyl-benzimidazol-2-yl]methoxy]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 B0X doub 70 n y C4 C3 B0X sing 71 n y C5 C6 B0X sing 72 n y O27 C26 B0X doub 73 n n C26 C3 B0X sing 74 n n C26 O28 B0X sing 75 n n C3 C2 B0X doub 76 n y C6 C1 B0X doub 77 n y C2 C1 B0X sing 78 n y C1 O25 B0X sing 79 n n O25 C24 B0X sing 80 n n C24 C10 B0X sing 81 n n C10 N11 B0X doub 82 n y C10 N9 B0X sing 83 n y N11 C7 B0X sing 84 n y N9 C23 B0X sing 85 n n N9 C8 B0X sing 86 n y C7 C8 B0X doub 87 n y C7 C14 B0X sing 88 n y C8 C13 B0X sing 89 n y C14 C15 B0X doub 90 n y C13 C12 B0X doub 91 n y C15 C12 B0X sing 92 n y C12 O22 B0X sing 93 n n O22 C20 B0X sing 94 n n C21 C20 B0X doub 95 n y C21 C16 B0X sing 96 n y C20 C19 B0X sing 97 n y C16 C17 B0X doub 98 n y C19 C30 B0X sing 99 n n C19 N18 B0X doub 100 n y C17 N18 B0X sing 101 n y C17 C29 B0X sing 102 n n C2 H1 B0X sing 103 n n C4 H2 B0X sing 104 n n C5 H3 B0X sing 105 n n C6 H4 B0X sing 106 n n C13 H5 B0X sing 107 n n C14 H6 B0X sing 108 n n C15 H7 B0X sing 109 n n C16 H8 B0X sing 110 n n C21 H9 B0X sing 111 n n C23 H10 B0X sing 112 n n C23 H11 B0X sing 113 n n C23 H12 B0X sing 114 n n C24 H13 B0X sing 115 n n C24 H14 B0X sing 116 n n O28 H15 B0X sing 117 n n C29 H16 B0X sing 118 n n C29 H17 B0X sing 119 n n C29 H18 B0X sing 120 n n C30 H19 B0X sing 121 n n C30 H20 B0X sing 122 n n C30 H21 B0X sing 123 n n # _atom_sites.entry_id 6IZM _atom_sites.fract_transf_matrix[1][1] 0.025633 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 B0X A 1 501 341 B0X RTC . D 4 HOH A 1 601 45 HOH HOH . D 4 HOH A 2 602 100 HOH HOH . D 4 HOH A 3 603 113 HOH HOH . D 4 HOH A 4 604 64 HOH HOH . D 4 HOH A 5 605 54 HOH HOH . D 4 HOH A 6 606 166 HOH HOH . D 4 HOH A 7 607 33 HOH HOH . D 4 HOH A 8 608 43 HOH HOH . D 4 HOH A 9 609 167 HOH HOH . D 4 HOH A 10 610 53 HOH HOH . D 4 HOH A 11 611 140 HOH HOH . D 4 HOH A 12 612 39 HOH HOH . D 4 HOH A 13 613 106 HOH HOH . D 4 HOH A 14 614 70 HOH HOH . D 4 HOH A 15 615 47 HOH HOH . D 4 HOH A 16 616 62 HOH HOH . D 4 HOH A 17 617 48 HOH HOH . D 4 HOH A 18 618 17 HOH HOH . D 4 HOH A 19 619 148 HOH HOH . D 4 HOH A 20 620 58 HOH HOH . D 4 HOH A 21 621 73 HOH HOH . D 4 HOH A 22 622 46 HOH HOH . D 4 HOH A 23 623 36 HOH HOH . D 4 HOH A 24 624 25 HOH HOH . D 4 HOH A 25 625 18 HOH HOH . D 4 HOH A 26 626 163 HOH HOH . D 4 HOH A 27 627 128 HOH HOH . D 4 HOH A 28 628 97 HOH HOH . D 4 HOH A 29 629 41 HOH HOH . D 4 HOH A 30 630 149 HOH HOH . D 4 HOH A 31 631 65 HOH HOH . D 4 HOH A 32 632 23 HOH HOH . D 4 HOH A 33 633 52 HOH HOH . D 4 HOH A 34 634 24 HOH HOH . D 4 HOH A 35 635 16 HOH HOH . D 4 HOH A 36 636 92 HOH HOH . D 4 HOH A 37 637 2 HOH HOH . D 4 HOH A 38 638 142 HOH HOH . D 4 HOH A 39 639 84 HOH HOH . D 4 HOH A 40 640 68 HOH HOH . D 4 HOH A 41 641 11 HOH HOH . D 4 HOH A 42 642 69 HOH HOH . D 4 HOH A 43 643 28 HOH HOH . D 4 HOH A 44 644 51 HOH HOH . D 4 HOH A 45 645 44 HOH HOH . D 4 HOH A 46 646 86 HOH HOH . D 4 HOH A 47 647 135 HOH HOH . D 4 HOH A 48 648 3 HOH HOH . D 4 HOH A 49 649 19 HOH HOH . D 4 HOH A 50 650 34 HOH HOH . D 4 HOH A 51 651 67 HOH HOH . D 4 HOH A 52 652 103 HOH HOH . D 4 HOH A 53 653 6 HOH HOH . D 4 HOH A 54 654 143 HOH HOH . D 4 HOH A 55 655 7 HOH HOH . D 4 HOH A 56 656 13 HOH HOH . D 4 HOH A 57 657 110 HOH HOH . D 4 HOH A 58 658 22 HOH HOH . D 4 HOH A 59 659 55 HOH HOH . D 4 HOH A 60 660 153 HOH HOH . D 4 HOH A 61 661 104 HOH HOH . D 4 HOH A 62 662 87 HOH HOH . D 4 HOH A 63 663 102 HOH HOH . D 4 HOH A 64 664 138 HOH HOH . D 4 HOH A 65 665 151 HOH HOH . D 4 HOH A 66 666 116 HOH HOH . D 4 HOH A 67 667 32 HOH HOH . D 4 HOH A 68 668 31 HOH HOH . D 4 HOH A 69 669 38 HOH HOH . D 4 HOH A 70 670 56 HOH HOH . D 4 HOH A 71 671 12 HOH HOH . D 4 HOH A 72 672 108 HOH HOH . D 4 HOH A 73 673 98 HOH HOH . D 4 HOH A 74 674 71 HOH HOH . D 4 HOH A 75 675 8 HOH HOH . D 4 HOH A 76 676 93 HOH HOH . D 4 HOH A 77 677 88 HOH HOH . D 4 HOH A 78 678 72 HOH HOH . D 4 HOH A 79 679 165 HOH HOH . D 4 HOH A 80 680 27 HOH HOH . D 4 HOH A 81 681 37 HOH HOH . D 4 HOH A 82 682 15 HOH HOH . D 4 HOH A 83 683 90 HOH HOH . D 4 HOH A 84 684 94 HOH HOH . D 4 HOH A 85 685 75 HOH HOH . D 4 HOH A 86 686 101 HOH HOH . D 4 HOH A 87 687 74 HOH HOH . D 4 HOH A 88 688 141 HOH HOH . D 4 HOH A 89 689 170 HOH HOH . D 4 HOH A 90 690 35 HOH HOH . D 4 HOH A 91 691 145 HOH HOH . D 4 HOH A 92 692 99 HOH HOH . D 4 HOH A 93 693 105 HOH HOH . D 4 HOH A 94 694 132 HOH HOH . D 4 HOH A 95 695 76 HOH HOH . D 4 HOH A 96 696 150 HOH HOH . D 4 HOH A 97 697 81 HOH HOH . D 4 HOH A 98 698 77 HOH HOH . D 4 HOH A 99 699 26 HOH HOH . D 4 HOH A 100 700 83 HOH HOH . D 4 HOH A 101 701 60 HOH HOH . D 4 HOH A 102 702 9 HOH HOH . D 4 HOH A 103 703 79 HOH HOH . D 4 HOH A 104 704 59 HOH HOH . D 4 HOH A 105 705 112 HOH HOH . D 4 HOH A 106 706 111 HOH HOH . D 4 HOH A 107 707 161 HOH HOH . D 4 HOH A 108 708 95 HOH HOH . D 4 HOH A 109 709 107 HOH HOH . D 4 HOH A 110 710 40 HOH HOH . D 4 HOH A 111 711 49 HOH HOH . D 4 HOH A 112 712 78 HOH HOH . D 4 HOH A 113 713 130 HOH HOH . D 4 HOH A 114 714 42 HOH HOH . D 4 HOH A 115 715 57 HOH HOH . D 4 HOH A 116 716 66 HOH HOH . D 4 HOH A 117 717 1 HOH HOH . D 4 HOH A 118 718 109 HOH HOH . D 4 HOH A 119 719 121 HOH HOH . D 4 HOH A 120 720 63 HOH HOH . D 4 HOH A 121 721 21 HOH HOH . D 4 HOH A 122 722 115 HOH HOH . D 4 HOH A 123 723 20 HOH HOH . D 4 HOH A 124 724 85 HOH HOH . D 4 HOH A 125 725 120 HOH HOH . D 4 HOH A 126 726 124 HOH HOH . D 4 HOH A 127 727 114 HOH HOH . D 4 HOH A 128 728 137 HOH HOH . D 4 HOH A 129 729 169 HOH HOH . D 4 HOH A 130 730 139 HOH HOH . D 4 HOH A 131 731 82 HOH HOH . D 4 HOH A 132 732 96 HOH HOH . D 4 HOH A 133 733 136 HOH HOH . D 4 HOH A 134 734 5 HOH HOH . D 4 HOH A 135 735 89 HOH HOH . D 4 HOH A 136 736 91 HOH HOH . D 4 HOH A 137 737 159 HOH HOH . D 4 HOH A 138 738 171 HOH HOH . D 4 HOH A 139 739 126 HOH HOH . D 4 HOH A 140 740 146 HOH HOH . D 4 HOH A 141 741 144 HOH HOH . D 4 HOH A 142 742 10 HOH HOH . D 4 HOH A 143 743 80 HOH HOH . D 4 HOH A 144 744 30 HOH HOH . D 4 HOH A 145 745 152 HOH HOH . D 4 HOH A 146 746 50 HOH HOH . D 4 HOH A 147 747 117 HOH HOH . D 4 HOH A 148 748 29 HOH HOH . D 4 HOH A 149 749 4 HOH HOH . D 4 HOH A 150 750 123 HOH HOH . D 4 HOH A 151 751 127 HOH HOH . D 4 HOH A 152 752 131 HOH HOH . D 4 HOH A 153 753 129 HOH HOH . D 4 HOH A 154 754 164 HOH HOH . D 4 HOH A 155 755 134 HOH HOH . D 4 HOH A 156 756 157 HOH HOH . D 4 HOH A 157 757 168 HOH HOH . D 4 HOH A 158 758 119 HOH HOH . D 4 HOH A 159 759 118 HOH HOH . D 4 HOH A 160 760 133 HOH HOH . D 4 HOH A 161 761 155 HOH HOH . D 4 HOH A 162 762 154 HOH HOH . D 4 HOH A 163 763 158 HOH HOH . D 4 HOH A 164 764 160 HOH HOH . D 4 HOH A 165 765 156 HOH HOH . D 4 HOH A 166 766 122 HOH HOH . D 4 HOH A 167 767 147 HOH HOH . E 4 HOH C 1 101 125 HOH HOH . E 4 HOH C 2 102 61 HOH HOH . E 4 HOH C 3 103 14 HOH HOH . E 4 HOH C 4 104 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B0X . . . C 3 8.876 48.037 57.618 1 30.15 ? C1 B0X 501 A 1 HETATM 2 C C2 B0X . . . C 3 7.534 48.383 57.581 1 30.25 ? C2 B0X 501 A 1 HETATM 3 C C3 B0X . . . C 3 7.143 49.644 57.149 1 30.68 ? C3 B0X 501 A 1 HETATM 4 C C4 B0X . . . C 3 8.093 50.57 56.755 1 30.48 ? C4 B0X 501 A 1 HETATM 5 C C5 B0X . . . C 3 9.437 50.233 56.789 1 30.41 ? C5 B0X 501 A 1 HETATM 6 C C6 B0X . . . C 3 9.833 48.973 57.219 1 30.72 ? C6 B0X 501 A 1 HETATM 7 C C7 B0X . . . C 3 12.178 47.84 61.243 1 30.1 ? C7 B0X 501 A 1 HETATM 8 C C8 B0X . . . C 3 11.145 46.995 61.763 1 30.83 ? C8 B0X 501 A 1 HETATM 9 N N9 B0X . . . C 3 10.47 46.467 60.67 1 30.06 ? N9 B0X 501 A 1 HETATM 10 C C10 B0X . . . C 3 11.072 46.968 59.589 1 29.44 ? C10 B0X 501 A 1 HETATM 11 N N11 B0X . . . C 3 12.086 47.785 59.86 1 29.32 ? N11 B0X 501 A 1 HETATM 12 C C12 B0X . . . C 3 11.844 47.533 63.993 1 33.16 ? C12 B0X 501 A 1 HETATM 13 C C13 B0X . . . C 3 10.988 46.852 63.116 1 31.53 ? C13 B0X 501 A 1 HETATM 14 C C14 B0X . . . C 3 13.016 48.507 62.094 1 31.74 ? C14 B0X 501 A 1 HETATM 15 C C15 B0X . . . C 3 12.858 48.362 63.48 1 31.48 ? C15 B0X 501 A 1 HETATM 16 C C16 B0X . . . C 3 14.486 45.239 66.319 1 36.43 ? C16 B0X 501 A 1 HETATM 17 C C17 B0X . . . C 3 14.848 45.881 67.497 1 37.33 ? C17 B0X 501 A 1 HETATM 18 N N18 B0X . . . C 3 14.208 46.967 67.96 1 36.26 ? N18 B0X 501 A 1 HETATM 19 C C19 B0X . . . C 3 13.175 47.438 67.242 1 35.34 ? C19 B0X 501 A 1 HETATM 20 C C20 B0X . . . C 3 12.758 46.847 66.057 1 35.36 ? C20 B0X 501 A 1 HETATM 21 C C21 B0X . . . C 3 13.424 45.729 65.589 1 36.13 ? C21 B0X 501 A 1 HETATM 22 O O22 B0X . . . C 3 11.681 47.384 65.363 1 33.96 ? O22 B0X 501 A 1 HETATM 23 C C23 B0X . . . C 3 9.33 45.543 60.779 1 29.66 ? C23 B0X 501 A 1 HETATM 24 C C24 B0X . . . C 3 10.644 46.645 58.171 1 28.93 ? C24 B0X 501 A 1 HETATM 25 O O25 B0X . . . C 3 9.235 46.761 58.055 1 29.25 ? O25 B0X 501 A 1 HETATM 26 C C26 B0X . . . C 3 5.727 49.993 57.112 1 30.45 ? C26 B0X 501 A 1 HETATM 27 O O27 B0X . . . C 3 5.376 51.111 56.893 1 31.73 ? O27 B0X 501 A 1 HETATM 28 O O28 B0X . . . C 3 4.88 48.965 57.325 1 30.52 ? O28 B0X 501 A 1 HETATM 29 C C29 B0X . . . C 3 16.003 45.356 68.302 1 38.14 ? C29 B0X 501 A 1 HETATM 30 C C30 B0X . . . C 3 12.459 48.65 67.758 1 35.89 ? C30 B0X 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #