data_6IZV # _model_server_result.job_id sAemG8-UHVFewP2Twsqxnw _model_server_result.datetime_utc '2024-10-19 12:44:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6izv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6IZV # _exptl.entry_id 6IZV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 195 0 ASP 195 1_555 D MG MG . 0 MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc2 C O2B ADP . 0 ADP 401 1_555 D MG MG . 0 MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc3 B OD2 ASP 195 1 ASP 195 1_555 F MG MG . 1 MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc4 E O1B ADP . 1 ADP 401 1_555 F MG MG . 1 MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6IZV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP 0 1 401 380 ADP ADP . D 3 MG 0 1 402 401 MG MG . E 2 ADP 1 1 401 380 ADP ADP . F 3 MG 1 1 402 401 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 72.949 65.523 40.695 1 113.41 ? PB ADP 401 0 1 HETATM 2 O O1B ADP . . . C 2 73.689 66.655 40.025 1 113.41 ? O1B ADP 401 0 1 HETATM 3 O O2B ADP . . . C 2 73.191 64.168 40.035 1 113.41 ? O2B ADP 401 0 1 HETATM 4 O O3B ADP . . . C 2 73.05 65.608 42.208 1 113.41 ? O3B ADP 401 0 1 HETATM 5 P PA ADP . . . C 2 70.089 65.384 41.128 1 113.41 ? PA ADP 401 0 1 HETATM 6 O O1A ADP . . . C 2 69.125 64.738 40.164 1 113.41 ? O1A ADP 401 0 1 HETATM 7 O O2A ADP . . . C 2 70.478 64.655 42.386 1 113.41 ? O2A ADP 401 0 1 HETATM 8 O O3A ADP . . . C 2 71.407 65.781 40.281 1 113.41 ? O3A ADP 401 0 1 HETATM 9 O O5' ADP . . . C 2 69.541 66.849 41.513 1 113.41 ? O5' ADP 401 0 1 HETATM 10 C C5' ADP . . . C 2 68.949 67.117 42.784 1 113.41 ? C5' ADP 401 0 1 HETATM 11 C C4' ADP . . . C 2 68.633 68.606 42.902 1 113.41 ? C4' ADP 401 0 1 HETATM 12 O O4' ADP . . . C 2 67.287 68.794 42.482 1 113.41 ? O4' ADP 401 0 1 HETATM 13 C C3' ADP . . . C 2 68.699 69.13 44.331 1 113.41 ? C3' ADP 401 0 1 HETATM 14 O O3' ADP . . . C 2 69.881 69.9 44.566 1 113.41 ? O3' ADP 401 0 1 HETATM 15 C C2' ADP . . . C 2 67.456 69.977 44.548 1 113.41 ? C2' ADP 401 0 1 HETATM 16 O O2' ADP . . . C 2 67.713 71.386 44.562 1 113.41 ? O2' ADP 401 0 1 HETATM 17 C C1' ADP . . . C 2 66.581 69.677 43.356 1 113.41 ? C1' ADP 401 0 1 HETATM 18 N N9 ADP . . . C 2 65.344 69.038 43.856 1 113.41 ? N9 ADP 401 0 1 HETATM 19 C C8 ADP . . . C 2 65.069 67.722 43.922 1 113.41 ? C8 ADP 401 0 1 HETATM 20 N N7 ADP . . . C 2 63.83 67.515 44.429 1 113.41 ? N7 ADP 401 0 1 HETATM 21 C C5 ADP . . . C 2 63.305 68.724 44.689 1 113.41 ? C5 ADP 401 0 1 HETATM 22 C C6 ADP . . . C 2 62.035 69.237 45.234 1 113.41 ? C6 ADP 401 0 1 HETATM 23 N N6 ADP . . . C 2 61.044 68.388 45.613 1 113.41 ? N6 ADP 401 0 1 HETATM 24 N N1 ADP . . . C 2 61.903 70.578 45.339 1 113.41 ? N1 ADP 401 0 1 HETATM 25 C C2 ADP . . . C 2 62.875 71.432 44.968 1 113.41 ? C2 ADP 401 0 1 HETATM 26 N N3 ADP . . . C 2 64.051 71.038 44.464 1 113.41 ? N3 ADP 401 0 1 HETATM 27 C C4 ADP . . . C 2 64.308 69.722 44.313 1 113.41 ? C4 ADP 401 0 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #