data_6J0H # _model_server_result.job_id c-KPTvXiLt8IctHnWp65Xw _model_server_result.datetime_utc '2025-02-27 01:02:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6J0H # _exptl.entry_id 6J0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J0H _cell.length_a 59.5 _cell.length_b 59.5 _cell.length_c 93.489 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 x,-y-1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 -29.75 23.37225 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 1 B THR 1 1_555 B N DVA 2 B DVA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 B OG1 THR 1 B THR 1 1_555 B C MVA 5 B MVA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.116 ? covale ? covale3 B N THR 1 B THR 1 1_555 B C0 PXZ 6 B PXZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.236 ? covale ? covale4 B C DVA 2 B DVA 2 1_555 B N PRO 3 B PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale5 B C PRO 3 B PRO 3 1_555 B N SAR 4 B SAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 B C SAR 4 B SAR 4 1_555 B N MVA 5 B MVA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.193 sing covale ? covale7 B C0' PXZ 6 B PXZ 6 1_555 B N THR 7 B THR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C THR 7 B THR 7 1_555 B N DVA 8 B DVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale9 B OG1 THR 7 B THR 7 1_555 B C MVA 11 B MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale10 B C DVA 8 B DVA 8 1_555 B N PRO 9 B PRO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale11 B C PRO 9 B PRO 9 1_555 B N SAR 10 B SAR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale12 B C SAR 10 B SAR 10 1_555 B N MVA 11 B MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? metalc ? metalc1 A O4 DT 1 A DT 1 1_555 C NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc2 A O4 DT 1 A DT 1 1_555 C NA NA . A NA 101 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc3 C NA NA . A NA 101 1_555 D O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc4 C NA NA . A NA 101 1_555 D O HOH . A HOH 206 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc5 C NA NA . A NA 101 1_555 D O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 C NA NA . A NA 101 1_555 D O HOH . A HOH 242 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? hydrog WATSON-CRICK hydrog1 A N3 DT 2 A DT 2 1_555 A N1 DA 8 A DA 8 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 2 A DT 2 1_555 A N6 DA 8 A DA 8 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_9_PAIR hydrog3 A N1 DG 3 A DG 3 1_555 A N7 DA 7 A DA 7 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_9_PAIR hydrog4 A O6 DG 3 A DG 3 1_555 A N6 DA 7 A DA 7 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DC 5 A DC 5 1_555 A N1 DG 6 A DG 6 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N4 DC 5 A DC 5 1_555 A O6 DG 6 A DG 6 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O2 DC 5 A DC 5 1_555 A N2 DG 6 A DG 6 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 6 A DG 6 1_555 A N3 DC 5 A DC 5 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 6 A DG 6 1_555 A O2 DC 5 A DC 5 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 6 A DG 6 1_555 A N4 DC 5 A DC 5 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_9_PAIR hydrog11 A N6 DA 7 A DA 7 1_555 A O6 DG 3 A DG 3 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_9_PAIR hydrog12 A N7 DA 7 A DA 7 1_555 A N1 DG 3 A DG 3 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 8 A DA 8 1_555 A N3 DT 2 A DT 2 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 8 A DA 8 1_555 A O4 DT 2 A DT 2 6_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6J0H _atom_sites.fract_transf_matrix[1][1] 0.016807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 101 1 NA NA . D 4 HOH A 1 201 45 HOH HOH . D 4 HOH A 2 202 50 HOH HOH . D 4 HOH A 3 203 28 HOH HOH . D 4 HOH A 4 204 13 HOH HOH . D 4 HOH A 5 205 91 HOH HOH . D 4 HOH A 6 206 18 HOH HOH . D 4 HOH A 7 207 16 HOH HOH . D 4 HOH A 8 208 38 HOH HOH . D 4 HOH A 9 209 34 HOH HOH . D 4 HOH A 10 210 21 HOH HOH . D 4 HOH A 11 211 112 HOH HOH . D 4 HOH A 12 212 14 HOH HOH . D 4 HOH A 13 213 15 HOH HOH . D 4 HOH A 14 214 82 HOH HOH . D 4 HOH A 15 215 30 HOH HOH . D 4 HOH A 16 216 92 HOH HOH . D 4 HOH A 17 217 22 HOH HOH . D 4 HOH A 18 218 48 HOH HOH . D 4 HOH A 19 219 46 HOH HOH . D 4 HOH A 20 220 41 HOH HOH . D 4 HOH A 21 221 98 HOH HOH . D 4 HOH A 22 222 88 HOH HOH . D 4 HOH A 23 223 42 HOH HOH . D 4 HOH A 24 224 43 HOH HOH . D 4 HOH A 25 225 23 HOH HOH . D 4 HOH A 26 226 59 HOH HOH . D 4 HOH A 27 227 105 HOH HOH . D 4 HOH A 28 228 101 HOH HOH . D 4 HOH A 29 229 25 HOH HOH . D 4 HOH A 30 230 32 HOH HOH . D 4 HOH A 31 231 26 HOH HOH . D 4 HOH A 32 232 62 HOH HOH . D 4 HOH A 33 233 37 HOH HOH . D 4 HOH A 34 234 52 HOH HOH . D 4 HOH A 35 235 51 HOH HOH . D 4 HOH A 36 236 39 HOH HOH . D 4 HOH A 37 237 47 HOH HOH . D 4 HOH A 38 238 108 HOH HOH . D 4 HOH A 39 239 31 HOH HOH . D 4 HOH A 40 240 40 HOH HOH . D 4 HOH A 41 241 63 HOH HOH . D 4 HOH A 42 242 36 HOH HOH . D 4 HOH A 43 243 54 HOH HOH . E 4 HOH B 1 101 24 HOH HOH . E 4 HOH B 2 102 17 HOH HOH . E 4 HOH B 3 103 20 HOH HOH . E 4 HOH B 4 104 56 HOH HOH . E 4 HOH B 5 105 29 HOH HOH . E 4 HOH B 6 106 19 HOH HOH . E 4 HOH B 7 107 27 HOH HOH . E 4 HOH B 8 108 33 HOH HOH . E 4 HOH B 9 109 77 HOH HOH . E 4 HOH B 10 110 53 HOH HOH . E 4 HOH B 11 111 86 HOH HOH . E 4 HOH B 12 112 71 HOH HOH . E 4 HOH B 13 113 70 HOH HOH . E 4 HOH B 14 114 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.992 _atom_site.Cartn_y -19.758 _atom_site.Cartn_z 23.372 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 40.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #