data_6J1X # _model_server_result.job_id JxDT_PUk3htheojQTqpBRA _model_server_result.datetime_utc '2025-04-15 01:22:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6J1X # _exptl.entry_id 6J1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.79 _cell.angle_gamma 90 _cell.entry_id 6J1X _cell.length_a 56.309 _cell.length_b 45.444 _cell.length_c 116.545 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6J1X _atom_sites.fract_transf_matrix[1][1] 0.017759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL B 1 1001 1 GOL GOL . C 2 GOL B 1 1002 2 GOL GOL . D 3 HOH B 1 1101 22 HOH HOH . D 3 HOH B 2 1102 51 HOH HOH . D 3 HOH B 3 1103 8 HOH HOH . D 3 HOH B 4 1104 9 HOH HOH . D 3 HOH B 5 1105 52 HOH HOH . D 3 HOH B 6 1106 33 HOH HOH . D 3 HOH B 7 1107 26 HOH HOH . D 3 HOH B 8 1108 19 HOH HOH . D 3 HOH B 9 1109 1 HOH HOH . D 3 HOH B 10 1110 60 HOH HOH . D 3 HOH B 11 1111 13 HOH HOH . D 3 HOH B 12 1112 34 HOH HOH . D 3 HOH B 13 1113 57 HOH HOH . D 3 HOH B 14 1114 16 HOH HOH . D 3 HOH B 15 1115 6 HOH HOH . D 3 HOH B 16 1116 7 HOH HOH . D 3 HOH B 17 1117 42 HOH HOH . D 3 HOH B 18 1118 56 HOH HOH . D 3 HOH B 19 1119 25 HOH HOH . D 3 HOH B 20 1120 23 HOH HOH . D 3 HOH B 21 1121 47 HOH HOH . D 3 HOH B 22 1122 12 HOH HOH . D 3 HOH B 23 1123 21 HOH HOH . D 3 HOH B 24 1124 15 HOH HOH . D 3 HOH B 25 1125 14 HOH HOH . D 3 HOH B 26 1126 55 HOH HOH . D 3 HOH B 27 1127 50 HOH HOH . D 3 HOH B 28 1128 48 HOH HOH . D 3 HOH B 29 1129 11 HOH HOH . D 3 HOH B 30 1130 46 HOH HOH . D 3 HOH B 31 1131 35 HOH HOH . D 3 HOH B 32 1132 28 HOH HOH . D 3 HOH B 33 1133 44 HOH HOH . D 3 HOH B 34 1134 41 HOH HOH . D 3 HOH B 35 1135 43 HOH HOH . D 3 HOH B 36 1136 27 HOH HOH . D 3 HOH B 37 1137 5 HOH HOH . D 3 HOH B 38 1138 24 HOH HOH . D 3 HOH B 39 1139 20 HOH HOH . D 3 HOH B 40 1140 38 HOH HOH . D 3 HOH B 41 1141 49 HOH HOH . D 3 HOH B 42 1142 18 HOH HOH . D 3 HOH B 43 1143 29 HOH HOH . D 3 HOH B 44 1144 17 HOH HOH . D 3 HOH B 45 1145 32 HOH HOH . D 3 HOH B 46 1146 53 HOH HOH . D 3 HOH B 47 1147 54 HOH HOH . D 3 HOH B 48 1148 36 HOH HOH . D 3 HOH B 49 1149 31 HOH HOH . D 3 HOH B 50 1150 59 HOH HOH . D 3 HOH B 51 1151 30 HOH HOH . D 3 HOH B 52 1152 39 HOH HOH . D 3 HOH B 53 1153 58 HOH HOH . D 3 HOH B 54 1154 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 122.601 -50.278 37.541 1 46.15 ? C1 GOL 1002 B 1 HETATM 2 O O1 GOL . . . C 2 121.247 -49.897 37.423 1 57.7 ? O1 GOL 1002 B 1 HETATM 3 C C2 GOL . . . C 2 123.361 -49.687 36.37 1 50.46 ? C2 GOL 1002 B 1 HETATM 4 O O2 GOL . . . C 2 124.141 -48.575 36.749 1 54.72 ? O2 GOL 1002 B 1 HETATM 5 C C3 GOL . . . C 2 124.204 -50.773 35.716 1 48.57 ? C3 GOL 1002 B 1 HETATM 6 O O3 GOL . . . C 2 123.529 -51.174 34.551 1 37.11 ? O3 GOL 1002 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #