data_6J23 # _model_server_result.job_id WlKx-vfMJyz70E6-FEh-sg _model_server_result.datetime_utc '2024-10-19 12:43:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6J23 # _exptl.entry_id 6J23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J23 _cell.length_a 51.381 _cell.length_b 82.52 _cell.length_c 86.974 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 13 A HIS 13 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 A NE2 HIS 217 A HIS 217 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A OD1 ASN 295 A ASN 295 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 C ZN ZN . A ZN 402 1_555 D O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 6J23 _atom_sites.fract_transf_matrix[1][1] 0.019462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 401 401 5GP 5GP . C 3 ZN A 1 402 1 ZN ZN . D 4 HOH A 1 501 139 HOH HOH . D 4 HOH A 2 502 183 HOH HOH . D 4 HOH A 3 503 190 HOH HOH . D 4 HOH A 4 504 199 HOH HOH . D 4 HOH A 5 505 132 HOH HOH . D 4 HOH A 6 506 140 HOH HOH . D 4 HOH A 7 507 136 HOH HOH . D 4 HOH A 8 508 68 HOH HOH . D 4 HOH A 9 509 164 HOH HOH . D 4 HOH A 10 510 9 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 135 HOH HOH . D 4 HOH A 13 513 154 HOH HOH . D 4 HOH A 14 514 4 HOH HOH . D 4 HOH A 15 515 87 HOH HOH . D 4 HOH A 16 516 20 HOH HOH . D 4 HOH A 17 517 58 HOH HOH . D 4 HOH A 18 518 168 HOH HOH . D 4 HOH A 19 519 198 HOH HOH . D 4 HOH A 20 520 29 HOH HOH . D 4 HOH A 21 521 43 HOH HOH . D 4 HOH A 22 522 40 HOH HOH . D 4 HOH A 23 523 17 HOH HOH . D 4 HOH A 24 524 13 HOH HOH . D 4 HOH A 25 525 120 HOH HOH . D 4 HOH A 26 526 148 HOH HOH . D 4 HOH A 27 527 78 HOH HOH . D 4 HOH A 28 528 130 HOH HOH . D 4 HOH A 29 529 110 HOH HOH . D 4 HOH A 30 530 131 HOH HOH . D 4 HOH A 31 531 61 HOH HOH . D 4 HOH A 32 532 83 HOH HOH . D 4 HOH A 33 533 63 HOH HOH . D 4 HOH A 34 534 19 HOH HOH . D 4 HOH A 35 535 210 HOH HOH . D 4 HOH A 36 536 7 HOH HOH . D 4 HOH A 37 537 184 HOH HOH . D 4 HOH A 38 538 3 HOH HOH . D 4 HOH A 39 539 34 HOH HOH . D 4 HOH A 40 540 102 HOH HOH . D 4 HOH A 41 541 163 HOH HOH . D 4 HOH A 42 542 67 HOH HOH . D 4 HOH A 43 543 37 HOH HOH . D 4 HOH A 44 544 53 HOH HOH . D 4 HOH A 45 545 74 HOH HOH . D 4 HOH A 46 546 147 HOH HOH . D 4 HOH A 47 547 125 HOH HOH . D 4 HOH A 48 548 166 HOH HOH . D 4 HOH A 49 549 42 HOH HOH . D 4 HOH A 50 550 146 HOH HOH . D 4 HOH A 51 551 21 HOH HOH . D 4 HOH A 52 552 202 HOH HOH . D 4 HOH A 53 553 111 HOH HOH . D 4 HOH A 54 554 25 HOH HOH . D 4 HOH A 55 555 33 HOH HOH . D 4 HOH A 56 556 172 HOH HOH . D 4 HOH A 57 557 2 HOH HOH . D 4 HOH A 58 558 49 HOH HOH . D 4 HOH A 59 559 143 HOH HOH . D 4 HOH A 60 560 169 HOH HOH . D 4 HOH A 61 561 5 HOH HOH . D 4 HOH A 62 562 73 HOH HOH . D 4 HOH A 63 563 64 HOH HOH . D 4 HOH A 64 564 56 HOH HOH . D 4 HOH A 65 565 82 HOH HOH . D 4 HOH A 66 566 16 HOH HOH . D 4 HOH A 67 567 31 HOH HOH . D 4 HOH A 68 568 26 HOH HOH . D 4 HOH A 69 569 10 HOH HOH . D 4 HOH A 70 570 173 HOH HOH . D 4 HOH A 71 571 114 HOH HOH . D 4 HOH A 72 572 103 HOH HOH . D 4 HOH A 73 573 207 HOH HOH . D 4 HOH A 74 574 180 HOH HOH . D 4 HOH A 75 575 211 HOH HOH . D 4 HOH A 76 576 54 HOH HOH . D 4 HOH A 77 577 113 HOH HOH . D 4 HOH A 78 578 28 HOH HOH . D 4 HOH A 79 579 6 HOH HOH . D 4 HOH A 80 580 30 HOH HOH . D 4 HOH A 81 581 18 HOH HOH . D 4 HOH A 82 582 91 HOH HOH . D 4 HOH A 83 583 57 HOH HOH . D 4 HOH A 84 584 176 HOH HOH . D 4 HOH A 85 585 81 HOH HOH . D 4 HOH A 86 586 137 HOH HOH . D 4 HOH A 87 587 105 HOH HOH . D 4 HOH A 88 588 177 HOH HOH . D 4 HOH A 89 589 46 HOH HOH . D 4 HOH A 90 590 191 HOH HOH . D 4 HOH A 91 591 158 HOH HOH . D 4 HOH A 92 592 133 HOH HOH . D 4 HOH A 93 593 193 HOH HOH . D 4 HOH A 94 594 134 HOH HOH . D 4 HOH A 95 595 76 HOH HOH . D 4 HOH A 96 596 141 HOH HOH . D 4 HOH A 97 597 52 HOH HOH . D 4 HOH A 98 598 156 HOH HOH . D 4 HOH A 99 599 161 HOH HOH . D 4 HOH A 100 600 39 HOH HOH . D 4 HOH A 101 601 65 HOH HOH . D 4 HOH A 102 602 167 HOH HOH . D 4 HOH A 103 603 122 HOH HOH . D 4 HOH A 104 604 170 HOH HOH . D 4 HOH A 105 605 41 HOH HOH . D 4 HOH A 106 606 186 HOH HOH . D 4 HOH A 107 607 59 HOH HOH . D 4 HOH A 108 608 44 HOH HOH . D 4 HOH A 109 609 179 HOH HOH . D 4 HOH A 110 610 85 HOH HOH . D 4 HOH A 111 611 121 HOH HOH . D 4 HOH A 112 612 77 HOH HOH . D 4 HOH A 113 613 24 HOH HOH . D 4 HOH A 114 614 106 HOH HOH . D 4 HOH A 115 615 138 HOH HOH . D 4 HOH A 116 616 15 HOH HOH . D 4 HOH A 117 617 22 HOH HOH . D 4 HOH A 118 618 50 HOH HOH . D 4 HOH A 119 619 27 HOH HOH . D 4 HOH A 120 620 48 HOH HOH . D 4 HOH A 121 621 62 HOH HOH . D 4 HOH A 122 622 38 HOH HOH . D 4 HOH A 123 623 97 HOH HOH . D 4 HOH A 124 624 60 HOH HOH . D 4 HOH A 125 625 89 HOH HOH . D 4 HOH A 126 626 206 HOH HOH . D 4 HOH A 127 627 55 HOH HOH . D 4 HOH A 128 628 195 HOH HOH . D 4 HOH A 129 629 66 HOH HOH . D 4 HOH A 130 630 12 HOH HOH . D 4 HOH A 131 631 182 HOH HOH . D 4 HOH A 132 632 45 HOH HOH . D 4 HOH A 133 633 162 HOH HOH . D 4 HOH A 134 634 213 HOH HOH . D 4 HOH A 135 635 200 HOH HOH . D 4 HOH A 136 636 71 HOH HOH . D 4 HOH A 137 637 192 HOH HOH . D 4 HOH A 138 638 100 HOH HOH . D 4 HOH A 139 639 99 HOH HOH . D 4 HOH A 140 640 174 HOH HOH . D 4 HOH A 141 641 80 HOH HOH . D 4 HOH A 142 642 209 HOH HOH . D 4 HOH A 143 643 112 HOH HOH . D 4 HOH A 144 644 108 HOH HOH . D 4 HOH A 145 645 159 HOH HOH . D 4 HOH A 146 646 204 HOH HOH . D 4 HOH A 147 647 104 HOH HOH . D 4 HOH A 148 648 93 HOH HOH . D 4 HOH A 149 649 187 HOH HOH . D 4 HOH A 150 650 197 HOH HOH . D 4 HOH A 151 651 118 HOH HOH . D 4 HOH A 152 652 157 HOH HOH . D 4 HOH A 153 653 107 HOH HOH . D 4 HOH A 154 654 208 HOH HOH . D 4 HOH A 155 655 115 HOH HOH . D 4 HOH A 156 656 84 HOH HOH . D 4 HOH A 157 657 201 HOH HOH . D 4 HOH A 158 658 51 HOH HOH . D 4 HOH A 159 659 142 HOH HOH . D 4 HOH A 160 660 149 HOH HOH . D 4 HOH A 161 661 69 HOH HOH . D 4 HOH A 162 662 181 HOH HOH . D 4 HOH A 163 663 126 HOH HOH . D 4 HOH A 164 664 119 HOH HOH . D 4 HOH A 165 665 32 HOH HOH . D 4 HOH A 166 666 70 HOH HOH . D 4 HOH A 167 667 72 HOH HOH . D 4 HOH A 168 668 47 HOH HOH . D 4 HOH A 169 669 86 HOH HOH . D 4 HOH A 170 670 116 HOH HOH . D 4 HOH A 171 671 203 HOH HOH . D 4 HOH A 172 672 188 HOH HOH . D 4 HOH A 173 673 88 HOH HOH . D 4 HOH A 174 674 127 HOH HOH . D 4 HOH A 175 675 155 HOH HOH . D 4 HOH A 176 676 129 HOH HOH . D 4 HOH A 177 677 79 HOH HOH . D 4 HOH A 178 678 189 HOH HOH . D 4 HOH A 179 679 175 HOH HOH . D 4 HOH A 180 680 98 HOH HOH . D 4 HOH A 181 681 185 HOH HOH . D 4 HOH A 182 682 94 HOH HOH . D 4 HOH A 183 683 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . B 2 -7.339 -0.099 7.433 1 9.43 ? P 5GP 401 A 1 HETATM 2 O O1P 5GP . . . B 2 -7.286 -1.57 7.091 1 12.33 ? O1P 5GP 401 A 1 HETATM 3 O O2P 5GP . . . B 2 -6.011 0.561 7.627 1 12.61 ? O2P 5GP 401 A 1 HETATM 4 O O3P 5GP . . . B 2 -8.32 0.216 8.529 1 10.57 ? O3P 5GP 401 A 1 HETATM 5 O O5' 5GP . . . B 2 -7.986 0.665 6.195 1 11.56 ? O5' 5GP 401 A 1 HETATM 6 C C5' 5GP . . . B 2 -7.169 1.144 5.136 1 12.31 ? C5' 5GP 401 A 1 HETATM 7 C C4' 5GP . . . B 2 -6.615 0 4.315 1 14.8 ? C4' 5GP 401 A 1 HETATM 8 O O4' 5GP . . . B 2 -7.698 -0.702 3.661 1 12.95 ? O4' 5GP 401 A 1 HETATM 9 C C3' 5GP . . . B 2 -5.7 0.413 3.176 1 14.67 ? C3' 5GP 401 A 1 HETATM 10 O O3' 5GP . . . B 2 -4.377 0.647 3.614 1 19.06 ? O3' 5GP 401 A 1 HETATM 11 C C2' 5GP . . . B 2 -5.828 -0.743 2.181 1 16.73 ? C2' 5GP 401 A 1 HETATM 12 O O2' 5GP . . . B 2 -4.943 -1.805 2.501 1 17.11 ? O2' 5GP 401 A 1 HETATM 13 C C1' 5GP . . . B 2 -7.274 -1.204 2.407 1 12.52 ? C1' 5GP 401 A 1 HETATM 14 N N9 5GP . . . B 2 -8.147 -0.637 1.368 1 16.12 ? N9 5GP 401 A 1 HETATM 15 C C8 5GP . . . B 2 -9.014 0.376 1.524 1 13.63 ? C8 5GP 401 A 1 HETATM 16 N N7 5GP . . . B 2 -9.622 0.614 0.337 1 14.41 ? N7 5GP 401 A 1 HETATM 17 C C5 5GP . . . B 2 -9.112 -0.246 -0.577 1 15 ? C5 5GP 401 A 1 HETATM 18 C C6 5GP . . . B 2 -9.316 -0.46 -1.95 1 18.92 ? C6 5GP 401 A 1 HETATM 19 O O6 5GP . . . B 2 -10.145 0.204 -2.626 1 22.41 ? O6 5GP 401 A 1 HETATM 20 N N1 5GP . . . B 2 -8.655 -1.441 -2.571 1 18.05 ? N1 5GP 401 A 1 HETATM 21 C C2 5GP . . . B 2 -7.765 -2.191 -1.909 1 17.14 ? C2 5GP 401 A 1 HETATM 22 N N2 5GP . . . B 2 -7.102 -3.16 -2.589 1 23.75 ? N2 5GP 401 A 1 HETATM 23 N N3 5GP . . . B 2 -7.526 -2 -0.589 1 12.13 ? N3 5GP 401 A 1 HETATM 24 C C4 5GP . . . B 2 -8.19 -1.041 0.092 1 12.66 ? C4 5GP 401 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 75 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #