data_6J24 # _model_server_result.job_id egbY3JLD-0xI-B5j6PenvQ _model_server_result.datetime_utc '2024-12-04 09:49:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6J24 # _exptl.entry_id 6J24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3~{S},4'~{R},4'~{a}~{S},6'~{R},8'~{a}~{S})-4',6'-dimethyl-5-phenyl-spiro[1~{H}-pyridine-3,5'-2,3,4,4~{a},6,8~{a}-hexahydro-1~{H}-naphthalene]-2,4-dione" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.88 _cell.angle_gamma 90 _cell.entry_id 6J24 _cell.length_a 160.445 _cell.length_b 62.151 _cell.length_c 112.296 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C22 H25 N O2' _chem_comp.formula_weight 335.439 _chem_comp.id BYO _chem_comp.mon_nstd_flag . _chem_comp.name "(3~{S},4'~{R},4'~{a}~{S},6'~{R},8'~{a}~{S})-4',6'-dimethyl-5-phenyl-spiro[1~{H}-pyridine-3,5'-2,3,4,4~{a},6,8~{a}-hexahydro-1~{H}-naphthalene]-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C19 BYO doub 70 n y C18 C17 BYO sing 71 n y C19 C20 BYO sing 72 n y C17 C16 BYO doub 73 n y C20 C15 BYO doub 74 n y C16 C15 BYO sing 75 n y C15 C12 BYO sing 76 n n C12 C13 BYO doub 77 n n C12 C11 BYO sing 78 n n O1 C11 BYO doub 79 n n C13 N1 BYO sing 80 n n C11 C10 BYO sing 81 n n C21 C1 BYO sing 82 n n C2 C1 BYO sing 83 n n C2 C3 BYO doub 84 n n C1 C10 BYO sing 85 n n C10 C14 BYO sing 86 n n C10 C9 BYO sing 87 n n N1 C14 BYO sing 88 n n C5 C4 BYO sing 89 n n C5 C6 BYO sing 90 n n C3 C4 BYO sing 91 n n C14 O2 BYO doub 92 n n C8 C9 BYO sing 93 n n C8 C22 BYO sing 94 n n C8 C7 BYO sing 95 n n C9 C4 BYO sing 96 n n C6 C7 BYO sing 97 n n C1 H1 BYO sing 98 n n C2 H2 BYO sing 99 n n C3 H4 BYO sing 100 n n C4 H6 BYO sing 101 n n C5 H7 BYO sing 102 n n C5 H8 BYO sing 103 n n C6 H9 BYO sing 104 n n C6 H10 BYO sing 105 n n C7 H11 BYO sing 106 n n C7 H12 BYO sing 107 n n C8 H13 BYO sing 108 n n C9 H14 BYO sing 109 n n C13 H15 BYO sing 110 n n C16 H16 BYO sing 111 n n C17 H17 BYO sing 112 n n C18 H18 BYO sing 113 n n C19 H19 BYO sing 114 n n C20 H20 BYO sing 115 n n C21 H21 BYO sing 116 n n C21 H22 BYO sing 117 n n C21 H23 BYO sing 118 n n C22 H24 BYO sing 119 n n C22 H25 BYO sing 120 n n C22 H26 BYO sing 121 n n N1 H27 BYO sing 122 n n # _atom_sites.entry_id 6J24 _atom_sites.fract_transf_matrix[1][1] 0.006233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BYO B 1 401 1 BYO 6AC . D 3 SAM B 1 402 1 SAM SAM . E 2 BYO A 1 401 2 BYO 6AC . F 3 SAM A 1 402 2 SAM SAM . G 4 HOH B 1 501 120 HOH HOH . G 4 HOH B 2 502 114 HOH HOH . G 4 HOH B 3 503 4 HOH HOH . G 4 HOH B 4 504 27 HOH HOH . G 4 HOH B 5 505 124 HOH HOH . G 4 HOH B 6 506 102 HOH HOH . G 4 HOH B 7 507 23 HOH HOH . G 4 HOH B 8 508 17 HOH HOH . G 4 HOH B 9 509 117 HOH HOH . G 4 HOH B 10 510 34 HOH HOH . G 4 HOH B 11 511 18 HOH HOH . G 4 HOH B 12 512 96 HOH HOH . G 4 HOH B 13 513 121 HOH HOH . G 4 HOH B 14 514 74 HOH HOH . G 4 HOH B 15 515 3 HOH HOH . G 4 HOH B 16 516 58 HOH HOH . G 4 HOH B 17 517 39 HOH HOH . G 4 HOH B 18 518 69 HOH HOH . G 4 HOH B 19 519 1 HOH HOH . G 4 HOH B 20 520 20 HOH HOH . G 4 HOH B 21 521 10 HOH HOH . G 4 HOH B 22 522 108 HOH HOH . G 4 HOH B 23 523 75 HOH HOH . G 4 HOH B 24 524 14 HOH HOH . G 4 HOH B 25 525 36 HOH HOH . G 4 HOH B 26 526 33 HOH HOH . G 4 HOH B 27 527 6 HOH HOH . G 4 HOH B 28 528 22 HOH HOH . G 4 HOH B 29 529 98 HOH HOH . G 4 HOH B 30 530 19 HOH HOH . G 4 HOH B 31 531 28 HOH HOH . G 4 HOH B 32 532 100 HOH HOH . G 4 HOH B 33 533 101 HOH HOH . G 4 HOH B 34 534 57 HOH HOH . G 4 HOH B 35 535 54 HOH HOH . G 4 HOH B 36 536 63 HOH HOH . G 4 HOH B 37 537 2 HOH HOH . G 4 HOH B 38 538 111 HOH HOH . G 4 HOH B 39 539 76 HOH HOH . G 4 HOH B 40 540 125 HOH HOH . G 4 HOH B 41 541 62 HOH HOH . G 4 HOH B 42 542 41 HOH HOH . G 4 HOH B 43 543 46 HOH HOH . G 4 HOH B 44 544 50 HOH HOH . G 4 HOH B 45 545 25 HOH HOH . G 4 HOH B 46 546 99 HOH HOH . G 4 HOH B 47 547 119 HOH HOH . G 4 HOH B 48 548 48 HOH HOH . G 4 HOH B 49 549 42 HOH HOH . G 4 HOH B 50 550 35 HOH HOH . G 4 HOH B 51 551 104 HOH HOH . G 4 HOH B 52 552 94 HOH HOH . G 4 HOH B 53 553 56 HOH HOH . G 4 HOH B 54 554 81 HOH HOH . G 4 HOH B 55 555 123 HOH HOH . G 4 HOH B 56 556 90 HOH HOH . G 4 HOH B 57 557 61 HOH HOH . G 4 HOH B 58 558 44 HOH HOH . G 4 HOH B 59 559 93 HOH HOH . G 4 HOH B 60 560 43 HOH HOH . G 4 HOH B 61 561 97 HOH HOH . G 4 HOH B 62 562 73 HOH HOH . G 4 HOH B 63 563 89 HOH HOH . G 4 HOH B 64 564 91 HOH HOH . G 4 HOH B 65 565 109 HOH HOH . G 4 HOH B 66 566 65 HOH HOH . G 4 HOH B 67 567 113 HOH HOH . G 4 HOH B 68 568 82 HOH HOH . G 4 HOH B 69 569 84 HOH HOH . G 4 HOH B 70 570 53 HOH HOH . G 4 HOH B 71 571 134 HOH HOH . G 4 HOH B 72 572 66 HOH HOH . G 4 HOH B 73 573 92 HOH HOH . G 4 HOH B 74 574 112 HOH HOH . G 4 HOH B 75 575 128 HOH HOH . G 4 HOH B 76 576 70 HOH HOH . G 4 HOH B 77 577 86 HOH HOH . H 4 HOH A 1 501 126 HOH HOH . H 4 HOH A 2 502 15 HOH HOH . H 4 HOH A 3 503 95 HOH HOH . H 4 HOH A 4 504 79 HOH HOH . H 4 HOH A 5 505 21 HOH HOH . H 4 HOH A 6 506 55 HOH HOH . H 4 HOH A 7 507 85 HOH HOH . H 4 HOH A 8 508 8 HOH HOH . H 4 HOH A 9 509 118 HOH HOH . H 4 HOH A 10 510 31 HOH HOH . H 4 HOH A 11 511 32 HOH HOH . H 4 HOH A 12 512 87 HOH HOH . H 4 HOH A 13 513 16 HOH HOH . H 4 HOH A 14 514 103 HOH HOH . H 4 HOH A 15 515 116 HOH HOH . H 4 HOH A 16 516 5 HOH HOH . H 4 HOH A 17 517 7 HOH HOH . H 4 HOH A 18 518 47 HOH HOH . H 4 HOH A 19 519 68 HOH HOH . H 4 HOH A 20 520 12 HOH HOH . H 4 HOH A 21 521 77 HOH HOH . H 4 HOH A 22 522 72 HOH HOH . H 4 HOH A 23 523 122 HOH HOH . H 4 HOH A 24 524 71 HOH HOH . H 4 HOH A 25 525 40 HOH HOH . H 4 HOH A 26 526 13 HOH HOH . H 4 HOH A 27 527 9 HOH HOH . H 4 HOH A 28 528 45 HOH HOH . H 4 HOH A 29 529 115 HOH HOH . H 4 HOH A 30 530 107 HOH HOH . H 4 HOH A 31 531 29 HOH HOH . H 4 HOH A 32 532 24 HOH HOH . H 4 HOH A 33 533 37 HOH HOH . H 4 HOH A 34 534 11 HOH HOH . H 4 HOH A 35 535 59 HOH HOH . H 4 HOH A 36 536 67 HOH HOH . H 4 HOH A 37 537 106 HOH HOH . H 4 HOH A 38 538 83 HOH HOH . H 4 HOH A 39 539 26 HOH HOH . H 4 HOH A 40 540 64 HOH HOH . H 4 HOH A 41 541 129 HOH HOH . H 4 HOH A 42 542 132 HOH HOH . H 4 HOH A 43 543 52 HOH HOH . H 4 HOH A 44 544 110 HOH HOH . H 4 HOH A 45 545 30 HOH HOH . H 4 HOH A 46 546 38 HOH HOH . H 4 HOH A 47 547 127 HOH HOH . H 4 HOH A 48 548 60 HOH HOH . H 4 HOH A 49 549 105 HOH HOH . H 4 HOH A 50 550 131 HOH HOH . H 4 HOH A 51 551 49 HOH HOH . H 4 HOH A 52 552 51 HOH HOH . H 4 HOH A 53 553 80 HOH HOH . H 4 HOH A 54 554 88 HOH HOH . H 4 HOH A 55 555 78 HOH HOH . H 4 HOH A 56 556 133 HOH HOH . H 4 HOH A 57 557 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BYO . . . C 2 -24.672 17.157 17.605 0.96 78.21 ? C1 BYO 401 B 1 HETATM 2 C C2 BYO . . . C 2 -24.673 17.642 18.915 0.96 69.49 ? C2 BYO 401 B 1 HETATM 3 C C3 BYO . . . C 2 -24.709 19.227 18.916 0.96 68.35 ? C3 BYO 401 B 1 HETATM 4 C C4 BYO . . . C 2 -23.372 19.69 18.542 0.96 82.23 ? C4 BYO 401 B 1 HETATM 5 C C5 BYO . . . C 2 -23.521 21.202 18.252 0.96 79.26 ? C5 BYO 401 B 1 HETATM 6 C C6 BYO . . . C 2 -22.171 21.899 17.891 0.96 77.1 ? C6 BYO 401 B 1 HETATM 7 C C7 BYO . . . C 2 -21.208 20.857 17.124 0.96 72.96 ? C7 BYO 401 B 1 HETATM 8 C C8 BYO . . . C 2 -22.012 19.778 16.368 0.96 81.51 ? C8 BYO 401 B 1 HETATM 9 C C9 BYO . . . C 2 -22.642 18.754 17.37 0.96 84.96 ? C9 BYO 401 B 1 HETATM 10 C C10 BYO . . . C 2 -23.429 17.81 16.66 0.96 82.46 ? C10 BYO 401 B 1 HETATM 11 C C11 BYO . . . C 2 -24.114 18.021 15.389 0.96 77.16 ? C11 BYO 401 B 1 HETATM 12 C C12 BYO . . . C 2 -24.117 17.052 14.331 0.96 75.39 ? C12 BYO 401 B 1 HETATM 13 C C13 BYO . . . C 2 -22.872 16.243 14.159 0.96 75.31 ? C13 BYO 401 B 1 HETATM 14 C C14 BYO . . . C 2 -22.587 16.46 16.699 0.96 80.68 ? C14 BYO 401 B 1 HETATM 15 C C15 BYO . . . C 2 -25.02 17.414 13.186 0.96 73.11 ? C15 BYO 401 B 1 HETATM 16 C C16 BYO . . . C 2 -24.514 17.609 11.919 0.96 73.81 ? C16 BYO 401 B 1 HETATM 17 C C17 BYO . . . C 2 -25.372 17.945 10.898 0.96 65.94 ? C17 BYO 401 B 1 HETATM 18 C C18 BYO . . . C 2 -26.705 18.105 11.174 0.96 69.66 ? C18 BYO 401 B 1 HETATM 19 C C19 BYO . . . C 2 -27.192 17.919 12.449 0.96 74.3 ? C19 BYO 401 B 1 HETATM 20 C C20 BYO . . . C 2 -26.345 17.585 13.467 0.96 69.24 ? C20 BYO 401 B 1 HETATM 21 C C21 BYO . . . C 2 -25.993 17.694 17.195 0.96 75.24 ? C21 BYO 401 B 1 HETATM 22 C C22 BYO . . . C 2 -21.089 19.129 15.374 0.96 77.47 ? C22 BYO 401 B 1 HETATM 23 N N1 BYO . . . C 2 -22.332 15.716 15.427 0.96 68.18 ? N1 BYO 401 B 1 HETATM 24 O O1 BYO . . . C 2 -24.679 19.014 15.247 0.96 77.46 ? O1 BYO 401 B 1 HETATM 25 O O2 BYO . . . C 2 -22.168 16.008 17.686 0.96 89.97 ? O2 BYO 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #