data_6J24 # _model_server_result.job_id J5pZ3GQ3OqSLY46hhgruzA _model_server_result.datetime_utc '2024-10-19 01:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6J24 # _exptl.entry_id 6J24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.88 _cell.angle_gamma 90 _cell.entry_id 6J24 _cell.length_a 160.445 _cell.length_b 62.151 _cell.length_c 112.296 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 330 n n N HN1 SAM sing 331 n n N HN2 SAM sing 332 n n CA C SAM sing 333 n n CA CB SAM sing 334 n n CA HA SAM sing 335 n n C O SAM doub 336 n n C OXT SAM sing 337 n n CB CG SAM sing 338 n n CB HB1 SAM sing 339 n n CB HB2 SAM sing 340 n n CG SD SAM sing 341 n n CG HG1 SAM sing 342 n n CG HG2 SAM sing 343 n n SD CE SAM sing 344 n n SD C5' SAM sing 345 n n CE HE1 SAM sing 346 n n CE HE2 SAM sing 347 n n CE HE3 SAM sing 348 n n C5' C4' SAM sing 349 n n C5' "H5'1" SAM sing 350 n n C5' "H5'2" SAM sing 351 n n C4' O4' SAM sing 352 n n C4' C3' SAM sing 353 n n C4' H4' SAM sing 354 n n O4' C1' SAM sing 355 n n C3' O3' SAM sing 356 n n C3' C2' SAM sing 357 n n C3' H3' SAM sing 358 n n O3' HO3' SAM sing 359 n n C2' O2' SAM sing 360 n n C2' C1' SAM sing 361 n n C2' H2' SAM sing 362 n n O2' HO2' SAM sing 363 n n C1' N9 SAM sing 364 n n C1' H1' SAM sing 365 n n N9 C8 SAM sing 366 n y N9 C4 SAM sing 367 n y C8 N7 SAM doub 368 n y C8 H8 SAM sing 369 n n N7 C5 SAM sing 370 n y C5 C6 SAM sing 371 n y C5 C4 SAM doub 372 n y C6 N6 SAM sing 373 n n C6 N1 SAM doub 374 n y N6 HN61 SAM sing 375 n n N6 HN62 SAM sing 376 n n N1 C2 SAM sing 377 n y C2 N3 SAM doub 378 n y C2 H2 SAM sing 379 n n N3 C4 SAM sing 380 n y # _atom_sites.entry_id 6J24 _atom_sites.fract_transf_matrix[1][1] 0.006233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BYO B 1 401 1 BYO 6AC . D 3 SAM B 1 402 1 SAM SAM . E 2 BYO A 1 401 2 BYO 6AC . F 3 SAM A 1 402 2 SAM SAM . G 4 HOH B 1 501 120 HOH HOH . G 4 HOH B 2 502 114 HOH HOH . G 4 HOH B 3 503 4 HOH HOH . G 4 HOH B 4 504 27 HOH HOH . G 4 HOH B 5 505 124 HOH HOH . G 4 HOH B 6 506 102 HOH HOH . G 4 HOH B 7 507 23 HOH HOH . G 4 HOH B 8 508 17 HOH HOH . G 4 HOH B 9 509 117 HOH HOH . G 4 HOH B 10 510 34 HOH HOH . G 4 HOH B 11 511 18 HOH HOH . G 4 HOH B 12 512 96 HOH HOH . G 4 HOH B 13 513 121 HOH HOH . G 4 HOH B 14 514 74 HOH HOH . G 4 HOH B 15 515 3 HOH HOH . G 4 HOH B 16 516 58 HOH HOH . G 4 HOH B 17 517 39 HOH HOH . G 4 HOH B 18 518 69 HOH HOH . G 4 HOH B 19 519 1 HOH HOH . G 4 HOH B 20 520 20 HOH HOH . G 4 HOH B 21 521 10 HOH HOH . G 4 HOH B 22 522 108 HOH HOH . G 4 HOH B 23 523 75 HOH HOH . G 4 HOH B 24 524 14 HOH HOH . G 4 HOH B 25 525 36 HOH HOH . G 4 HOH B 26 526 33 HOH HOH . G 4 HOH B 27 527 6 HOH HOH . G 4 HOH B 28 528 22 HOH HOH . G 4 HOH B 29 529 98 HOH HOH . G 4 HOH B 30 530 19 HOH HOH . G 4 HOH B 31 531 28 HOH HOH . G 4 HOH B 32 532 100 HOH HOH . G 4 HOH B 33 533 101 HOH HOH . G 4 HOH B 34 534 57 HOH HOH . G 4 HOH B 35 535 54 HOH HOH . G 4 HOH B 36 536 63 HOH HOH . G 4 HOH B 37 537 2 HOH HOH . G 4 HOH B 38 538 111 HOH HOH . G 4 HOH B 39 539 76 HOH HOH . G 4 HOH B 40 540 125 HOH HOH . G 4 HOH B 41 541 62 HOH HOH . G 4 HOH B 42 542 41 HOH HOH . G 4 HOH B 43 543 46 HOH HOH . G 4 HOH B 44 544 50 HOH HOH . G 4 HOH B 45 545 25 HOH HOH . G 4 HOH B 46 546 99 HOH HOH . G 4 HOH B 47 547 119 HOH HOH . G 4 HOH B 48 548 48 HOH HOH . G 4 HOH B 49 549 42 HOH HOH . G 4 HOH B 50 550 35 HOH HOH . G 4 HOH B 51 551 104 HOH HOH . G 4 HOH B 52 552 94 HOH HOH . G 4 HOH B 53 553 56 HOH HOH . G 4 HOH B 54 554 81 HOH HOH . G 4 HOH B 55 555 123 HOH HOH . G 4 HOH B 56 556 90 HOH HOH . G 4 HOH B 57 557 61 HOH HOH . G 4 HOH B 58 558 44 HOH HOH . G 4 HOH B 59 559 93 HOH HOH . G 4 HOH B 60 560 43 HOH HOH . G 4 HOH B 61 561 97 HOH HOH . G 4 HOH B 62 562 73 HOH HOH . G 4 HOH B 63 563 89 HOH HOH . G 4 HOH B 64 564 91 HOH HOH . G 4 HOH B 65 565 109 HOH HOH . G 4 HOH B 66 566 65 HOH HOH . G 4 HOH B 67 567 113 HOH HOH . G 4 HOH B 68 568 82 HOH HOH . G 4 HOH B 69 569 84 HOH HOH . G 4 HOH B 70 570 53 HOH HOH . G 4 HOH B 71 571 134 HOH HOH . G 4 HOH B 72 572 66 HOH HOH . G 4 HOH B 73 573 92 HOH HOH . G 4 HOH B 74 574 112 HOH HOH . G 4 HOH B 75 575 128 HOH HOH . G 4 HOH B 76 576 70 HOH HOH . G 4 HOH B 77 577 86 HOH HOH . H 4 HOH A 1 501 126 HOH HOH . H 4 HOH A 2 502 15 HOH HOH . H 4 HOH A 3 503 95 HOH HOH . H 4 HOH A 4 504 79 HOH HOH . H 4 HOH A 5 505 21 HOH HOH . H 4 HOH A 6 506 55 HOH HOH . H 4 HOH A 7 507 85 HOH HOH . H 4 HOH A 8 508 8 HOH HOH . H 4 HOH A 9 509 118 HOH HOH . H 4 HOH A 10 510 31 HOH HOH . H 4 HOH A 11 511 32 HOH HOH . H 4 HOH A 12 512 87 HOH HOH . H 4 HOH A 13 513 16 HOH HOH . H 4 HOH A 14 514 103 HOH HOH . H 4 HOH A 15 515 116 HOH HOH . H 4 HOH A 16 516 5 HOH HOH . H 4 HOH A 17 517 7 HOH HOH . H 4 HOH A 18 518 47 HOH HOH . H 4 HOH A 19 519 68 HOH HOH . H 4 HOH A 20 520 12 HOH HOH . H 4 HOH A 21 521 77 HOH HOH . H 4 HOH A 22 522 72 HOH HOH . H 4 HOH A 23 523 122 HOH HOH . H 4 HOH A 24 524 71 HOH HOH . H 4 HOH A 25 525 40 HOH HOH . H 4 HOH A 26 526 13 HOH HOH . H 4 HOH A 27 527 9 HOH HOH . H 4 HOH A 28 528 45 HOH HOH . H 4 HOH A 29 529 115 HOH HOH . H 4 HOH A 30 530 107 HOH HOH . H 4 HOH A 31 531 29 HOH HOH . H 4 HOH A 32 532 24 HOH HOH . H 4 HOH A 33 533 37 HOH HOH . H 4 HOH A 34 534 11 HOH HOH . H 4 HOH A 35 535 59 HOH HOH . H 4 HOH A 36 536 67 HOH HOH . H 4 HOH A 37 537 106 HOH HOH . H 4 HOH A 38 538 83 HOH HOH . H 4 HOH A 39 539 26 HOH HOH . H 4 HOH A 40 540 64 HOH HOH . H 4 HOH A 41 541 129 HOH HOH . H 4 HOH A 42 542 132 HOH HOH . H 4 HOH A 43 543 52 HOH HOH . H 4 HOH A 44 544 110 HOH HOH . H 4 HOH A 45 545 30 HOH HOH . H 4 HOH A 46 546 38 HOH HOH . H 4 HOH A 47 547 127 HOH HOH . H 4 HOH A 48 548 60 HOH HOH . H 4 HOH A 49 549 105 HOH HOH . H 4 HOH A 50 550 131 HOH HOH . H 4 HOH A 51 551 49 HOH HOH . H 4 HOH A 52 552 51 HOH HOH . H 4 HOH A 53 553 80 HOH HOH . H 4 HOH A 54 554 88 HOH HOH . H 4 HOH A 55 555 78 HOH HOH . H 4 HOH A 56 556 133 HOH HOH . H 4 HOH A 57 557 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 3 -11.973 14.831 12.839 1 43.01 ? N SAM 402 B 1 HETATM 2 C CA SAM . . . D 3 -12.317 16.24 12.957 1 49.99 ? CA SAM 402 B 1 HETATM 3 C C SAM . . . D 3 -11.843 16.832 14.28 1 57.71 ? C SAM 402 B 1 HETATM 4 O O SAM . . . D 3 -11.215 17.89 14.322 1 69.08 ? O SAM 402 B 1 HETATM 5 O OXT SAM . . . D 3 -12.068 16.268 15.351 1 50.47 ? OXT SAM 402 B 1 HETATM 6 C CB SAM . . . D 3 -13.826 16.408 12.825 1 59.35 ? CB SAM 402 B 1 HETATM 7 C CG SAM . . . D 3 -14.273 17.046 11.515 1 62.73 ? CG SAM 402 B 1 HETATM 8 S SD SAM . . . D 3 -16.057 16.955 11.204 1 72.8 ? SD SAM 402 B 1 HETATM 9 C CE SAM . . . D 3 -16.756 16.414 12.789 1 65.06 ? CE SAM 402 B 1 HETATM 10 C C5' SAM . . . D 3 -16.141 15.46 10.178 1 50.86 ? C5' SAM 402 B 1 HETATM 11 C C4' SAM . . . D 3 -15.126 15.534 9.037 1 54.58 ? C4' SAM 402 B 1 HETATM 12 O O4' SAM . . . D 3 -15.212 14.39 8.207 1 51.23 ? O4' SAM 402 B 1 HETATM 13 C C3' SAM . . . D 3 -15.399 16.749 8.16 1 56.2 ? C3' SAM 402 B 1 HETATM 14 O O3' SAM . . . D 3 -14.222 17.499 8.048 1 53 ? O3' SAM 402 B 1 HETATM 15 C C2' SAM . . . D 3 -15.777 16.207 6.801 1 53.4 ? C2' SAM 402 B 1 HETATM 16 O O2' SAM . . . D 3 -15.172 16.912 5.751 1 49.57 ? O2' SAM 402 B 1 HETATM 17 C C1' SAM . . . D 3 -15.19 14.819 6.855 1 52.8 ? C1' SAM 402 B 1 HETATM 18 N N9 SAM . . . D 3 -15.895 13.904 5.967 1 50.26 ? N9 SAM 402 B 1 HETATM 19 C C8 SAM . . . D 3 -17.243 13.755 5.774 1 52.22 ? C8 SAM 402 B 1 HETATM 20 N N7 SAM . . . D 3 -17.412 12.78 4.854 1 51.55 ? N7 SAM 402 B 1 HETATM 21 C C5 SAM . . . D 3 -16.191 12.321 4.47 1 53.98 ? C5 SAM 402 B 1 HETATM 22 C C6 SAM . . . D 3 -15.776 11.347 3.575 1 50.97 ? C6 SAM 402 B 1 HETATM 23 N N6 SAM . . . D 3 -16.67 10.646 2.891 1 49.66 ? N6 SAM 402 B 1 HETATM 24 N N1 SAM . . . D 3 -14.42 11.117 3.412 1 51.75 ? N1 SAM 402 B 1 HETATM 25 C C2 SAM . . . D 3 -13.481 11.837 4.123 1 48.76 ? C2 SAM 402 B 1 HETATM 26 N N3 SAM . . . D 3 -13.902 12.803 5.006 1 46.34 ? N3 SAM 402 B 1 HETATM 27 C C4 SAM . . . D 3 -15.231 13.034 5.166 1 53.49 ? C4 SAM 402 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #