data_6J3O
#
_model_server_result.job_id            aoUjPy0ybk5Zpbv7Sjiq0Q 
_model_server_result.datetime_utc      '2025-03-01 03:44:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j3o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":900}' 
#
_entry.id    6J3O 
#
_exptl.entry_id    6J3O 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              261.323 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-methyl-2-[[(3~{R})-1-methylpiperidin-3-yl]amino]-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6J3O 
_cell.length_a            101.52 
_cell.length_b            101.52 
_cell.length_c            99.68 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J3O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H19 N5 O' 
_chem_comp.formula_weight    261.323 
_chem_comp.id                B4L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-methyl-2-[[(3~{R})-1-methylpiperidin-3-yl]amino]-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 N15 B4L sing 70 n n 
C16 N15 B4L sing 71 n n 
C16 C17 B4L sing 72 n n 
N15 C14 B4L sing 73 n n 
C14 C13 B4L sing 74 n n 
C17 C18 B4L sing 75 n n 
C18 C13 B4L sing 76 n n 
C13 N01 B4L sing 77 n n 
N01 C02 B4L sing 78 n n 
C02 N08 B4L doub 79 n n 
C02 N03 B4L sing 80 n n 
C12 N03 B4L sing 81 n n 
N08 C07 B4L sing 82 n n 
N03 C04 B4L sing 83 n n 
C07 C06 B4L doub 84 n y 
C07 C09 B4L sing 85 n y 
C04 C06 B4L sing 86 n n 
C04 O05 B4L doub 87 n n 
C06 N11 B4L sing 88 n y 
C09 C10 B4L doub 89 n y 
N11 C10 B4L sing 90 n y 
C10 H1 B4L sing 91 n n 
C13 H2 B4L sing 92 n n 
C17 H3 B4L sing 93 n n 
C17 H4 B4L sing 94 n n 
N01 H5 B4L sing 95 n n 
C09 H6 B4L sing 96 n n 
N11 H7 B4L sing 97 n n 
C12 H8 B4L sing 98 n n 
C12 H9 B4L sing 99 n n 
C12 H10 B4L sing 100 n n 
C14 H11 B4L sing 101 n n 
C14 H12 B4L sing 102 n n 
C16 H13 B4L sing 103 n n 
C16 H14 B4L sing 104 n n 
C18 H15 B4L sing 105 n n 
C18 H16 B4L sing 106 n n 
C19 H17 B4L sing 107 n n 
C19 H18 B4L sing 108 n n 
C19 H19 B4L sing 109 n n 
#
_atom_sites.entry_id                     6J3O 
_atom_sites.fract_transf_matrix[1][1]    0.00985 
_atom_sites.fract_transf_matrix[1][2]    0.005687 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011374 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010032 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B4L A 1 900 900 B4L LIG . 
D 2 B4L B 1 900 900 B4L LIG . 
E 3 HOH A 1 1001 1001 HOH HOH . 
E 3 HOH A 2 1002 1002 HOH HOH . 
E 3 HOH A 3 1003 1003 HOH HOH . 
E 3 HOH A 4 1004 1004 HOH HOH . 
E 3 HOH A 5 1005 1005 HOH HOH . 
E 3 HOH A 6 1006 1006 HOH HOH . 
E 3 HOH A 7 1007 1007 HOH HOH . 
E 3 HOH A 8 1008 1008 HOH HOH . 
E 3 HOH A 9 1009 1009 HOH HOH . 
E 3 HOH A 10 1010 1010 HOH HOH . 
E 3 HOH A 11 1011 1011 HOH HOH . 
E 3 HOH A 12 1012 1012 HOH HOH . 
E 3 HOH A 13 1013 1013 HOH HOH . 
E 3 HOH A 14 1014 1014 HOH HOH . 
E 3 HOH A 15 1015 1015 HOH HOH . 
E 3 HOH A 16 1016 1016 HOH HOH . 
E 3 HOH A 17 1017 1017 HOH HOH . 
E 3 HOH A 18 1018 1018 HOH HOH . 
E 3 HOH A 19 1019 1019 HOH HOH . 
E 3 HOH A 20 1020 1020 HOH HOH . 
E 3 HOH A 21 1021 1021 HOH HOH . 
E 3 HOH A 22 1022 1022 HOH HOH . 
E 3 HOH A 23 1023 1023 HOH HOH . 
E 3 HOH A 24 1024 1024 HOH HOH . 
F 3 HOH B 1 1001 1001 HOH HOH . 
F 3 HOH B 2 1002 1002 HOH HOH . 
F 3 HOH B 3 1003 1003 HOH HOH . 
F 3 HOH B 4 1004 1004 HOH HOH . 
F 3 HOH B 5 1005 1005 HOH HOH . 
F 3 HOH B 6 1006 1006 HOH HOH . 
F 3 HOH B 7 1007 1007 HOH HOH . 
F 3 HOH B 8 1008 1008 HOH HOH . 
F 3 HOH B 9 1009 1009 HOH HOH . 
F 3 HOH B 10 1010 1010 HOH HOH . 
F 3 HOH B 11 1011 1011 HOH HOH . 
F 3 HOH B 12 1012 1012 HOH HOH . 
F 3 HOH B 13 1013 1013 HOH HOH . 
F 3 HOH B 14 1014 1014 HOH HOH . 
F 3 HOH B 15 1015 1015 HOH HOH . 
F 3 HOH B 16 1016 1016 HOH HOH . 
F 3 HOH B 17 1017 1017 HOH HOH . 
F 3 HOH B 18 1018 1018 HOH HOH . 
F 3 HOH B 19 1019 1019 HOH HOH . 
F 3 HOH B 20 1020 1020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 B4L . . . D 2 40.972 8.942 -22.79 1 84.32 ? C10 B4L 900 B 1 
HETATM 2 C C13 B4L . . . D 2 39.847 11.96 -17.267 1 78.22 ? C13 B4L 900 B 1 
HETATM 3 C C17 B4L . . . D 2 40.554 11.11 -15.134 1 74.56 ? C17 B4L 900 B 1 
HETATM 4 N N01 B4L . . . D 2 38.697 11.89 -18.23 1 78.67 ? N01 B4L 900 B 1 
HETATM 5 C C02 B4L . . . D 2 38.868 11.207 -19.501 1 69.5 ? C02 B4L 900 B 1 
HETATM 6 C C04 B4L . . . D 2 37.996 10.468 -21.51 1 82.05 ? C04 B4L 900 B 1 
HETATM 7 C C06 B4L . . . D 2 39.254 9.922 -21.855 1 78.59 ? C06 B4L 900 B 1 
HETATM 8 C C07 B4L . . . D 2 40.287 10.056 -20.967 1 76.64 ? C07 B4L 900 B 1 
HETATM 9 C C09 B4L . . . D 2 41.412 9.422 -21.562 1 84.62 ? C09 B4L 900 B 1 
HETATM 10 N N11 B4L . . . D 2 39.692 9.246 -22.951 1 84.88 ? N11 B4L 900 B 1 
HETATM 11 C C12 B4L . . . D 2 36.556 11.651 -19.996 1 72.9 ? C12 B4L 900 B 1 
HETATM 12 C C14 B4L . . . D 2 39.947 13.404 -16.727 1 83.3 ? C14 B4L 900 B 1 
HETATM 13 C C16 B4L . . . D 2 40.598 12.554 -14.593 1 75.04 ? C16 B4L 900 B 1 
HETATM 14 C C18 B4L . . . D 2 39.626 10.974 -16.225 1 71.31 ? C18 B4L 900 B 1 
HETATM 15 C C19 B4L . . . D 2 40.911 14.631 -15.208 1 82.73 ? C19 B4L 900 B 1 
HETATM 16 N N03 B4L . . . D 2 37.847 11.089 -20.353 1 77.58 ? N03 B4L 900 B 1 
HETATM 17 N N08 B4L . . . D 2 40.07 10.706 -19.789 1 74.92 ? N08 B4L 900 B 1 
HETATM 18 N N15 B4L . . . D 2 40.884 13.507 -15.645 1 83.13 ? N15 B4L 900 B 1 
HETATM 19 O O05 B4L . . . D 2 37.087 10.363 -22.263 1 68.23 ? O05 B4L 900 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#