data_6J4B # _model_server_result.job_id TwbeLX3L1ccb7HkUoxrO-A _model_server_result.datetime_utc '2024-11-28 13:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 6J4B # _exptl.entry_id 6J4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6J4B _cell.length_a 43.627 _cell.length_b 43.627 _cell.length_c 99.973 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 65.4405 37.78209 66.648667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 6 A ASP 9 1_555 D ZN ZN . A ZN 203 6_765 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A NE2 HIS 22 A HIS 25 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A NE2 HIS 23 A HIS 26 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 A OD2 ASP 33 A ASP 36 1_555 C ZN ZN . A ZN 202 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc5 A NE2 HIS 59 A HIS 62 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc6 A NE2 HIS 61 A HIS 64 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc7 A OE1 GLU 65 A GLU 68 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc8 A NE2 HIS 88 A HIS 91 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 A NE2 HIS 104 A HIS 107 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 A OE1 GLU 110 A GLU 113 1_555 D ZN ZN . A ZN 203 6_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 B ZN ZN . A ZN 201 1_555 J OXT ACY . A ACY 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc12 B ZN ZN . A ZN 201 1_555 L O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc13 B ZN ZN . A ZN 201 1_555 L O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc14 D ZN ZN . A ZN 203 1_555 L O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc15 E ZN ZN . A ZN 204 1_555 I OXT ACY . A ACY 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc16 E ZN ZN . A ZN 204 1_555 J O ACY . A ACY 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc17 E ZN ZN . A ZN 204 1_555 L O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc18 F ZN ZN . A ZN 205 1_555 L O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 6J4B _atom_sites.fract_transf_matrix[1][1] 0.022922 _atom_sites.fract_transf_matrix[1][2] 0.013234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 2 ZN A 1 202 2 ZN ZN . D 2 ZN A 1 203 3 ZN ZN . E 2 ZN A 1 204 4 ZN ZN . F 2 ZN A 1 205 5 ZN ZN . G 3 GOL A 1 206 1 GOL GOL . H 3 GOL A 1 207 2 GOL GOL . I 4 ACY A 1 208 1 ACY ACY . J 4 ACY A 1 209 2 ACY ACY . K 4 ACY A 1 210 3 ACY ACY . L 5 HOH A 1 301 43 HOH HOH . L 5 HOH A 2 302 13 HOH HOH . L 5 HOH A 3 303 76 HOH HOH . L 5 HOH A 4 304 8 HOH HOH . L 5 HOH A 5 305 29 HOH HOH . L 5 HOH A 6 306 40 HOH HOH . L 5 HOH A 7 307 5 HOH HOH . L 5 HOH A 8 308 35 HOH HOH . L 5 HOH A 9 309 32 HOH HOH . L 5 HOH A 10 310 65 HOH HOH . L 5 HOH A 11 311 12 HOH HOH . L 5 HOH A 12 312 10 HOH HOH . L 5 HOH A 13 313 64 HOH HOH . L 5 HOH A 14 314 39 HOH HOH . L 5 HOH A 15 315 6 HOH HOH . L 5 HOH A 16 316 49 HOH HOH . L 5 HOH A 17 317 21 HOH HOH . L 5 HOH A 18 318 19 HOH HOH . L 5 HOH A 19 319 7 HOH HOH . L 5 HOH A 20 320 41 HOH HOH . L 5 HOH A 21 321 87 HOH HOH . L 5 HOH A 22 322 38 HOH HOH . L 5 HOH A 23 323 15 HOH HOH . L 5 HOH A 24 324 9 HOH HOH . L 5 HOH A 25 325 36 HOH HOH . L 5 HOH A 26 326 3 HOH HOH . L 5 HOH A 27 327 83 HOH HOH . L 5 HOH A 28 328 11 HOH HOH . L 5 HOH A 29 329 20 HOH HOH . L 5 HOH A 30 330 52 HOH HOH . L 5 HOH A 31 331 31 HOH HOH . L 5 HOH A 32 332 48 HOH HOH . L 5 HOH A 33 333 86 HOH HOH . L 5 HOH A 34 334 53 HOH HOH . L 5 HOH A 35 335 24 HOH HOH . L 5 HOH A 36 336 44 HOH HOH . L 5 HOH A 37 337 27 HOH HOH . L 5 HOH A 38 338 33 HOH HOH . L 5 HOH A 39 339 59 HOH HOH . L 5 HOH A 40 340 34 HOH HOH . L 5 HOH A 41 341 67 HOH HOH . L 5 HOH A 42 342 55 HOH HOH . L 5 HOH A 43 343 22 HOH HOH . L 5 HOH A 44 344 2 HOH HOH . L 5 HOH A 45 345 4 HOH HOH . L 5 HOH A 46 346 42 HOH HOH . L 5 HOH A 47 347 89 HOH HOH . L 5 HOH A 48 348 1 HOH HOH . L 5 HOH A 49 349 57 HOH HOH . L 5 HOH A 50 350 88 HOH HOH . L 5 HOH A 51 351 56 HOH HOH . L 5 HOH A 52 352 54 HOH HOH . L 5 HOH A 53 353 30 HOH HOH . L 5 HOH A 54 354 58 HOH HOH . L 5 HOH A 55 355 16 HOH HOH . L 5 HOH A 56 356 75 HOH HOH . L 5 HOH A 57 357 63 HOH HOH . L 5 HOH A 58 358 61 HOH HOH . L 5 HOH A 59 359 17 HOH HOH . L 5 HOH A 60 360 51 HOH HOH . L 5 HOH A 61 361 26 HOH HOH . L 5 HOH A 62 362 25 HOH HOH . L 5 HOH A 63 363 14 HOH HOH . L 5 HOH A 64 364 85 HOH HOH . L 5 HOH A 65 365 45 HOH HOH . L 5 HOH A 66 366 18 HOH HOH . L 5 HOH A 67 367 62 HOH HOH . L 5 HOH A 68 368 23 HOH HOH . L 5 HOH A 69 369 60 HOH HOH . L 5 HOH A 70 370 37 HOH HOH . L 5 HOH A 71 371 47 HOH HOH . L 5 HOH A 72 372 84 HOH HOH . L 5 HOH A 73 373 46 HOH HOH . L 5 HOH A 74 374 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . I 4 25.561 18.118 21.713 1 15.15 ? C ACY 208 A 1 HETATM 2 O O ACY . . . I 4 25.739 17.951 20.498 1 14.77 ? O ACY 208 A 1 HETATM 3 O OXT ACY . . . I 4 25.41 17.219 22.479 1 13.33 ? OXT ACY 208 A 1 HETATM 4 C CH3 ACY . . . I 4 25.467 19.511 22.353 1 14.03 ? CH3 ACY 208 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #