data_6J4C # _model_server_result.job_id 5Ybq4qVrxEqSYQBIri-l8w _model_server_result.datetime_utc '2024-11-14 16:32:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6J4C # _exptl.entry_id 6J4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6J4C _cell.length_a 43.538 _cell.length_b 43.538 _cell.length_c 97.974 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 32.658 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 6 A ASP 9 1_555 B ZN ZN . A ZN 201 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A NE2 HIS 23 A HIS 26 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 A OD2 ASP 33 A ASP 36 1_555 D ZN ZN . A ZN 203 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 A NE2 HIS 59 A HIS 62 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc5 A NE2 HIS 61 A HIS 64 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 A OE1 GLU 65 A GLU 68 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc7 A NE2 HIS 88 A HIS 91 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc8 A NE2 HIS 104 A HIS 107 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc9 A OE1 GLU 110 A GLU 113 1_555 B ZN ZN . A ZN 201 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 136 n n C1 C2 GOL sing 137 n n C1 H11 GOL sing 138 n n C1 H12 GOL sing 139 n n O1 HO1 GOL sing 140 n n C2 O2 GOL sing 141 n n C2 C3 GOL sing 142 n n C2 H2 GOL sing 143 n n O2 HO2 GOL sing 144 n n C3 O3 GOL sing 145 n n C3 H31 GOL sing 146 n n C3 H32 GOL sing 147 n n O3 HO3 GOL sing 148 n n # _atom_sites.entry_id 6J4C _atom_sites.fract_transf_matrix[1][1] 0.022968 _atom_sites.fract_transf_matrix[1][2] 0.013261 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 2 ZN A 1 202 2 ZN ZN . D 2 ZN A 1 203 3 ZN ZN . E 3 GOL A 1 204 1 GOL GOL . F 4 ACY A 1 205 1 ACY ACY . G 5 HOH A 1 301 7 HOH HOH . G 5 HOH A 2 302 3 HOH HOH . G 5 HOH A 3 303 39 HOH HOH . G 5 HOH A 4 304 42 HOH HOH . G 5 HOH A 5 305 5 HOH HOH . G 5 HOH A 6 306 33 HOH HOH . G 5 HOH A 7 307 46 HOH HOH . G 5 HOH A 8 308 9 HOH HOH . G 5 HOH A 9 309 27 HOH HOH . G 5 HOH A 10 310 11 HOH HOH . G 5 HOH A 11 311 17 HOH HOH . G 5 HOH A 12 312 18 HOH HOH . G 5 HOH A 13 313 23 HOH HOH . G 5 HOH A 14 314 13 HOH HOH . G 5 HOH A 15 315 14 HOH HOH . G 5 HOH A 16 316 34 HOH HOH . G 5 HOH A 17 317 21 HOH HOH . G 5 HOH A 18 318 45 HOH HOH . G 5 HOH A 19 319 20 HOH HOH . G 5 HOH A 20 320 32 HOH HOH . G 5 HOH A 21 321 16 HOH HOH . G 5 HOH A 22 322 8 HOH HOH . G 5 HOH A 23 323 37 HOH HOH . G 5 HOH A 24 324 36 HOH HOH . G 5 HOH A 25 325 4 HOH HOH . G 5 HOH A 26 326 2 HOH HOH . G 5 HOH A 27 327 40 HOH HOH . G 5 HOH A 28 328 30 HOH HOH . G 5 HOH A 29 329 10 HOH HOH . G 5 HOH A 30 330 29 HOH HOH . G 5 HOH A 31 331 38 HOH HOH . G 5 HOH A 32 332 24 HOH HOH . G 5 HOH A 33 333 15 HOH HOH . G 5 HOH A 34 334 19 HOH HOH . G 5 HOH A 35 335 12 HOH HOH . G 5 HOH A 36 336 35 HOH HOH . G 5 HOH A 37 337 31 HOH HOH . G 5 HOH A 38 338 26 HOH HOH . G 5 HOH A 39 339 22 HOH HOH . G 5 HOH A 40 340 28 HOH HOH . G 5 HOH A 41 341 43 HOH HOH . G 5 HOH A 42 342 41 HOH HOH . G 5 HOH A 43 343 44 HOH HOH . G 5 HOH A 44 344 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -22.39 6.92 -3.589 1 18.04 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 3 -22.132 6.179 -2.442 1 16.2 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 3 -21.56 6.907 -4.86 1 21.71 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 3 -20.569 5.896 -4.915 1 24.69 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 3 -22.359 7.226 -6.151 1 20.98 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 3 -23.773 7.375 -5.881 1 25.87 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #