data_6J4D # _model_server_result.job_id vV3a6v1i0gfeFtdQ1Psmlg _model_server_result.datetime_utc '2024-10-11 16:28:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6J4D # _exptl.entry_id 6J4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6J4D _cell.length_a 43.425 _cell.length_b 43.425 _cell.length_c 98.383 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 32.794333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 6J4D _atom_sites.fract_transf_matrix[1][1] 0.023028 _atom_sites.fract_transf_matrix[1][2] 0.013295 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 201 1 FLC FLC . C 3 GOL A 1 202 1 GOL GOL . D 4 HOH A 1 301 104 HOH HOH . D 4 HOH A 2 302 199 HOH HOH . D 4 HOH A 3 303 49 HOH HOH . D 4 HOH A 4 304 86 HOH HOH . D 4 HOH A 5 305 99 HOH HOH . D 4 HOH A 6 306 202 HOH HOH . D 4 HOH A 7 307 30 HOH HOH . D 4 HOH A 8 308 106 HOH HOH . D 4 HOH A 9 309 32 HOH HOH . D 4 HOH A 10 310 42 HOH HOH . D 4 HOH A 11 311 23 HOH HOH . D 4 HOH A 12 312 17 HOH HOH . D 4 HOH A 13 313 7 HOH HOH . D 4 HOH A 14 314 40 HOH HOH . D 4 HOH A 15 315 6 HOH HOH . D 4 HOH A 16 316 112 HOH HOH . D 4 HOH A 17 317 68 HOH HOH . D 4 HOH A 18 318 35 HOH HOH . D 4 HOH A 19 319 200 HOH HOH . D 4 HOH A 20 320 31 HOH HOH . D 4 HOH A 21 321 9 HOH HOH . D 4 HOH A 22 322 149 HOH HOH . D 4 HOH A 23 323 5 HOH HOH . D 4 HOH A 24 324 87 HOH HOH . D 4 HOH A 25 325 83 HOH HOH . D 4 HOH A 26 326 20 HOH HOH . D 4 HOH A 27 327 102 HOH HOH . D 4 HOH A 28 328 11 HOH HOH . D 4 HOH A 29 329 16 HOH HOH . D 4 HOH A 30 330 12 HOH HOH . D 4 HOH A 31 331 38 HOH HOH . D 4 HOH A 32 332 91 HOH HOH . D 4 HOH A 33 333 52 HOH HOH . D 4 HOH A 34 334 75 HOH HOH . D 4 HOH A 35 335 78 HOH HOH . D 4 HOH A 36 336 46 HOH HOH . D 4 HOH A 37 337 1 HOH HOH . D 4 HOH A 38 338 76 HOH HOH . D 4 HOH A 39 339 82 HOH HOH . D 4 HOH A 40 340 101 HOH HOH . D 4 HOH A 41 341 74 HOH HOH . D 4 HOH A 42 342 66 HOH HOH . D 4 HOH A 43 343 15 HOH HOH . D 4 HOH A 44 344 55 HOH HOH . D 4 HOH A 45 345 27 HOH HOH . D 4 HOH A 46 346 79 HOH HOH . D 4 HOH A 47 347 94 HOH HOH . D 4 HOH A 48 348 64 HOH HOH . D 4 HOH A 49 349 29 HOH HOH . D 4 HOH A 50 350 4 HOH HOH . D 4 HOH A 51 351 24 HOH HOH . D 4 HOH A 52 352 13 HOH HOH . D 4 HOH A 53 353 14 HOH HOH . D 4 HOH A 54 354 107 HOH HOH . D 4 HOH A 55 355 56 HOH HOH . D 4 HOH A 56 356 85 HOH HOH . D 4 HOH A 57 357 54 HOH HOH . D 4 HOH A 58 358 84 HOH HOH . D 4 HOH A 59 359 97 HOH HOH . D 4 HOH A 60 360 33 HOH HOH . D 4 HOH A 61 361 2 HOH HOH . D 4 HOH A 62 362 108 HOH HOH . D 4 HOH A 63 363 90 HOH HOH . D 4 HOH A 64 364 100 HOH HOH . D 4 HOH A 65 365 36 HOH HOH . D 4 HOH A 66 366 67 HOH HOH . D 4 HOH A 67 367 37 HOH HOH . D 4 HOH A 68 368 60 HOH HOH . D 4 HOH A 69 369 18 HOH HOH . D 4 HOH A 70 370 71 HOH HOH . D 4 HOH A 71 371 10 HOH HOH . D 4 HOH A 72 372 50 HOH HOH . D 4 HOH A 73 373 22 HOH HOH . D 4 HOH A 74 374 77 HOH HOH . D 4 HOH A 75 375 39 HOH HOH . D 4 HOH A 76 376 103 HOH HOH . D 4 HOH A 77 377 92 HOH HOH . D 4 HOH A 78 378 41 HOH HOH . D 4 HOH A 79 379 69 HOH HOH . D 4 HOH A 80 380 34 HOH HOH . D 4 HOH A 81 381 44 HOH HOH . D 4 HOH A 82 382 62 HOH HOH . D 4 HOH A 83 383 73 HOH HOH . D 4 HOH A 84 384 126 HOH HOH . D 4 HOH A 85 385 96 HOH HOH . D 4 HOH A 86 386 21 HOH HOH . D 4 HOH A 87 387 61 HOH HOH . D 4 HOH A 88 388 28 HOH HOH . D 4 HOH A 89 389 93 HOH HOH . D 4 HOH A 90 390 19 HOH HOH . D 4 HOH A 91 391 25 HOH HOH . D 4 HOH A 92 392 176 HOH HOH . D 4 HOH A 93 393 201 HOH HOH . D 4 HOH A 94 394 43 HOH HOH . D 4 HOH A 95 395 8 HOH HOH . D 4 HOH A 96 396 98 HOH HOH . D 4 HOH A 97 397 70 HOH HOH . D 4 HOH A 98 398 80 HOH HOH . D 4 HOH A 99 399 47 HOH HOH . D 4 HOH A 100 400 58 HOH HOH . D 4 HOH A 101 401 181 HOH HOH . D 4 HOH A 102 402 187 HOH HOH . D 4 HOH A 103 403 141 HOH HOH . D 4 HOH A 104 404 198 HOH HOH . D 4 HOH A 105 405 51 HOH HOH . D 4 HOH A 106 406 174 HOH HOH . D 4 HOH A 107 407 72 HOH HOH . D 4 HOH A 108 408 45 HOH HOH . D 4 HOH A 109 409 115 HOH HOH . D 4 HOH A 110 410 53 HOH HOH . D 4 HOH A 111 411 65 HOH HOH . D 4 HOH A 112 412 189 HOH HOH . D 4 HOH A 113 413 48 HOH HOH . D 4 HOH A 114 414 63 HOH HOH . D 4 HOH A 115 415 81 HOH HOH . D 4 HOH A 116 416 105 HOH HOH . D 4 HOH A 117 417 119 HOH HOH . D 4 HOH A 118 418 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -13.47 -2.625 9.96 1 19.88 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 3 -12.295 -2.021 9.647 1 15.17 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 3 -13.474 -3.94 9.196 1 18.81 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 3 -13.431 -5.004 10.04 1 12.22 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 3 -14.579 -3.963 8.163 1 22.25 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 3 -14.243 -4.227 6.818 1 31.92 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #