data_6J4M # _model_server_result.job_id R9z4Z62he6M6hXrMcNBM6A _model_server_result.datetime_utc '2024-10-18 22:20:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6J4M # _exptl.entry_id 6J4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J4M _cell.length_a 149.902 _cell.length_b 149.902 _cell.length_c 149.902 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 42 H ASP 44 1_555 D MG MG . H MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc2 A OD2 ASP 42 H ASP 44 1_555 D MG MG . H MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc3 A OE1 GLU 54 H GLU 56 1_555 E MG MG . H MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc4 A OE2 GLU 89 H GLU 91 1_555 E MG MG . H MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 A OE1 GLU 89 H GLU 91 1_555 F MG MG . H MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 A ND1 HIS 92 H HIS 94 1_555 E MG MG . H MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc7 A OE1 GLU 138 H GLU 140 1_555 F MG MG . H MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc8 A OE2 GLU 138 H GLU 140 1_555 F MG MG . H MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc9 A OD1 ASP 162 H ASP 164 1_555 C MG MG . H MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc10 A OD1 ASP 162 H ASP 164 1_555 C MG MG . H MG 301 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc11 A OE2 GLU 165 H GLU 167 1_555 C MG MG . H MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc12 A OE2 GLU 165 H GLU 167 1_555 C MG MG . H MG 301 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc13 D MG MG . H MG 302 1_555 J O HOH . H HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc14 D MG MG . H MG 302 1_555 J O HOH . H HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc15 D MG MG . H MG 302 24_445 B OD2 ASP 42 A ASP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc16 D MG MG . H MG 302 1_555 K O HOH . A HOH 406 18_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc17 E MG MG . H MG 303 1_555 J O HOH . H HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc18 E MG MG . H MG 303 1_555 J O HOH . H HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc19 F MG MG . H MG 304 1_555 J O HOH . H HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc20 F MG MG . H MG 304 1_555 J O HOH . H HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc21 B OE1 GLU 54 A GLU 56 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc22 B OE2 GLU 89 A GLU 91 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc23 B OE1 GLU 89 A GLU 91 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc24 B ND1 HIS 92 A HIS 94 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc25 B OE2 GLU 138 A GLU 140 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc26 B OD1 ASP 162 A ASP 164 1_555 G MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc27 B OD1 ASP 162 A ASP 164 1_555 G MG MG . A MG 301 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc28 B OE1 GLU 165 A GLU 167 1_555 G MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc29 B OE1 GLU 165 A GLU 167 1_555 G MG MG . A MG 301 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc30 H MG MG . A MG 302 1_555 K O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc31 H MG MG . A MG 302 1_555 K O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc32 I MG MG . A MG 303 1_555 K O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6J4M _atom_sites.fract_transf_matrix[1][1] 0.006671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG H 1 301 2 MG MG . D 2 MG H 1 302 3 MG MG . E 2 MG H 1 303 5 MG MG . F 2 MG H 1 304 7 MG MG . G 2 MG A 1 301 1 MG MG . H 2 MG A 1 302 4 MG MG . I 2 MG A 1 303 6 MG MG . J 3 HOH H 1 401 18 HOH HOH . J 3 HOH H 2 402 76 HOH HOH . J 3 HOH H 3 403 40 HOH HOH . J 3 HOH H 4 404 79 HOH HOH . J 3 HOH H 5 405 31 HOH HOH . J 3 HOH H 6 406 11 HOH HOH . J 3 HOH H 7 407 36 HOH HOH . J 3 HOH H 8 408 21 HOH HOH . J 3 HOH H 9 409 33 HOH HOH . J 3 HOH H 10 410 2 HOH HOH . J 3 HOH H 11 411 43 HOH HOH . J 3 HOH H 12 412 10 HOH HOH . J 3 HOH H 13 413 87 HOH HOH . J 3 HOH H 14 414 44 HOH HOH . J 3 HOH H 15 415 54 HOH HOH . J 3 HOH H 16 416 8 HOH HOH . J 3 HOH H 17 417 4 HOH HOH . J 3 HOH H 18 418 39 HOH HOH . J 3 HOH H 19 419 30 HOH HOH . J 3 HOH H 20 420 13 HOH HOH . J 3 HOH H 21 421 48 HOH HOH . J 3 HOH H 22 422 85 HOH HOH . J 3 HOH H 23 423 61 HOH HOH . J 3 HOH H 24 424 81 HOH HOH . J 3 HOH H 25 425 57 HOH HOH . J 3 HOH H 26 426 88 HOH HOH . J 3 HOH H 27 427 23 HOH HOH . J 3 HOH H 28 428 27 HOH HOH . J 3 HOH H 29 429 65 HOH HOH . J 3 HOH H 30 430 12 HOH HOH . J 3 HOH H 31 431 86 HOH HOH . J 3 HOH H 32 432 42 HOH HOH . J 3 HOH H 33 433 68 HOH HOH . J 3 HOH H 34 434 34 HOH HOH . J 3 HOH H 35 435 75 HOH HOH . J 3 HOH H 36 436 89 HOH HOH . J 3 HOH H 37 437 51 HOH HOH . J 3 HOH H 38 438 73 HOH HOH . J 3 HOH H 39 439 80 HOH HOH . J 3 HOH H 40 440 67 HOH HOH . J 3 HOH H 41 441 16 HOH HOH . K 3 HOH A 1 401 24 HOH HOH . K 3 HOH A 2 402 9 HOH HOH . K 3 HOH A 3 403 28 HOH HOH . K 3 HOH A 4 404 17 HOH HOH . K 3 HOH A 5 405 38 HOH HOH . K 3 HOH A 6 406 77 HOH HOH . K 3 HOH A 7 407 1 HOH HOH . K 3 HOH A 8 408 20 HOH HOH . K 3 HOH A 9 409 56 HOH HOH . K 3 HOH A 10 410 46 HOH HOH . K 3 HOH A 11 411 50 HOH HOH . K 3 HOH A 12 412 52 HOH HOH . K 3 HOH A 13 413 15 HOH HOH . K 3 HOH A 14 414 53 HOH HOH . K 3 HOH A 15 415 25 HOH HOH . K 3 HOH A 16 416 3 HOH HOH . K 3 HOH A 17 417 14 HOH HOH . K 3 HOH A 18 418 19 HOH HOH . K 3 HOH A 19 419 26 HOH HOH . K 3 HOH A 20 420 64 HOH HOH . K 3 HOH A 21 421 5 HOH HOH . K 3 HOH A 22 422 55 HOH HOH . K 3 HOH A 23 423 35 HOH HOH . K 3 HOH A 24 424 22 HOH HOH . K 3 HOH A 25 425 6 HOH HOH . K 3 HOH A 26 426 82 HOH HOH . K 3 HOH A 27 427 84 HOH HOH . K 3 HOH A 28 428 7 HOH HOH . K 3 HOH A 29 429 49 HOH HOH . K 3 HOH A 30 430 72 HOH HOH . K 3 HOH A 31 431 71 HOH HOH . K 3 HOH A 32 432 29 HOH HOH . K 3 HOH A 33 433 69 HOH HOH . K 3 HOH A 34 434 58 HOH HOH . K 3 HOH A 35 435 47 HOH HOH . K 3 HOH A 36 436 70 HOH HOH . K 3 HOH A 37 437 60 HOH HOH . K 3 HOH A 38 438 41 HOH HOH . K 3 HOH A 39 439 59 HOH HOH . K 3 HOH A 40 440 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -49.018 _atom_site.Cartn_y -37.694 _atom_site.Cartn_z -25.746 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 428 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #