data_6J4Q # _model_server_result.job_id ndyFGb_66c6IZHUkPYdyxg _model_server_result.datetime_utc '2024-11-07 14:49:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":302}' # _entry.id 6J4Q # _exptl.entry_id 6J4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6J4Q _cell.length_a 117.177 _cell.length_b 117.177 _cell.length_c 209.044 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,T,U 1 1 C,D,M,N,V,W 2 1 E,F,O,P,Q,X,Y 3 1 G,H,R,S,Z 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 N N N ? 4 P N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 113 A CYS 158 1_555 I C22 TQ8 . A TQ8 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? covale ? covale2 B SG CYS 58 B CYS 58 1_555 L C22 TQ8 . B TQ8 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? covale ? covale3 C SG CYS 113 C CYS 158 1_555 M C22 TQ8 . C TQ8 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale4 E SG CYS 113 F CYS 158 1_555 O C22 TQ8 . F TQ8 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? covale ? covale5 F SG CYS 58 G CYS 58 1_555 Q C22 TQ8 . G TQ8 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale6 G SG CYS 113 J CYS 158 1_555 R C22 TQ8 . J TQ8 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6J4Q _atom_sites.fract_transf_matrix[1][1] 0.008534 _atom_sites.fract_transf_matrix[1][2] 0.004927 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 TQ8 A 1 301 1 TQ8 TPC . J 4 GOL A 1 302 1 GOL GOL . K 4 GOL A 1 303 3 GOL GOL . L 3 TQ8 B 1 101 2 TQ8 TPC . M 3 TQ8 C 1 301 3 TQ8 TPC . N 4 GOL C 1 302 2 GOL GOL . O 3 TQ8 F 1 301 4 TQ8 TPC . P 4 GOL F 1 302 4 GOL GOL . Q 3 TQ8 G 1 101 5 TQ8 TPC . R 3 TQ8 J 1 301 6 TQ8 TPC . S 4 GOL J 1 302 5 GOL GOL . T 5 HOH A 1 401 104 HOH HOH . T 5 HOH A 2 402 222 HOH HOH . T 5 HOH A 3 403 10 HOH HOH . T 5 HOH A 4 404 220 HOH HOH . T 5 HOH A 5 405 305 HOH HOH . T 5 HOH A 6 406 29 HOH HOH . T 5 HOH A 7 407 285 HOH HOH . T 5 HOH A 8 408 2 HOH HOH . T 5 HOH A 9 409 157 HOH HOH . T 5 HOH A 10 410 167 HOH HOH . T 5 HOH A 11 411 7 HOH HOH . T 5 HOH A 12 412 107 HOH HOH . T 5 HOH A 13 413 75 HOH HOH . T 5 HOH A 14 414 38 HOH HOH . T 5 HOH A 15 415 322 HOH HOH . T 5 HOH A 16 416 214 HOH HOH . T 5 HOH A 17 417 22 HOH HOH . T 5 HOH A 18 418 33 HOH HOH . T 5 HOH A 19 419 228 HOH HOH . T 5 HOH A 20 420 1 HOH HOH . T 5 HOH A 21 421 235 HOH HOH . T 5 HOH A 22 422 43 HOH HOH . T 5 HOH A 23 423 196 HOH HOH . T 5 HOH A 24 424 44 HOH HOH . T 5 HOH A 25 425 55 HOH HOH . T 5 HOH A 26 426 49 HOH HOH . T 5 HOH A 27 427 14 HOH HOH . T 5 HOH A 28 428 172 HOH HOH . T 5 HOH A 29 429 100 HOH HOH . T 5 HOH A 30 430 98 HOH HOH . T 5 HOH A 31 431 295 HOH HOH . T 5 HOH A 32 432 335 HOH HOH . T 5 HOH A 33 433 224 HOH HOH . T 5 HOH A 34 434 288 HOH HOH . T 5 HOH A 35 435 144 HOH HOH . T 5 HOH A 36 436 240 HOH HOH . T 5 HOH A 37 437 242 HOH HOH . T 5 HOH A 38 438 40 HOH HOH . T 5 HOH A 39 439 183 HOH HOH . T 5 HOH A 40 440 213 HOH HOH . T 5 HOH A 41 441 223 HOH HOH . T 5 HOH A 42 442 76 HOH HOH . T 5 HOH A 43 443 15 HOH HOH . T 5 HOH A 44 444 68 HOH HOH . T 5 HOH A 45 445 338 HOH HOH . T 5 HOH A 46 446 137 HOH HOH . T 5 HOH A 47 447 103 HOH HOH . T 5 HOH A 48 448 41 HOH HOH . T 5 HOH A 49 449 136 HOH HOH . T 5 HOH A 50 450 337 HOH HOH . T 5 HOH A 51 451 174 HOH HOH . T 5 HOH A 52 452 135 HOH HOH . T 5 HOH A 53 453 247 HOH HOH . T 5 HOH A 54 454 155 HOH HOH . T 5 HOH A 55 455 179 HOH HOH . T 5 HOH A 56 456 97 HOH HOH . T 5 HOH A 57 457 332 HOH HOH . T 5 HOH A 58 458 236 HOH HOH . T 5 HOH A 59 459 339 HOH HOH . T 5 HOH A 60 460 248 HOH HOH . T 5 HOH A 61 461 209 HOH HOH . T 5 HOH A 62 462 330 HOH HOH . T 5 HOH A 63 463 58 HOH HOH . T 5 HOH A 64 464 197 HOH HOH . T 5 HOH A 65 465 21 HOH HOH . T 5 HOH A 66 466 200 HOH HOH . T 5 HOH A 67 467 282 HOH HOH . U 5 HOH B 1 201 145 HOH HOH . U 5 HOH B 2 202 12 HOH HOH . V 5 HOH C 1 401 308 HOH HOH . V 5 HOH C 2 402 246 HOH HOH . V 5 HOH C 3 403 114 HOH HOH . V 5 HOH C 4 404 77 HOH HOH . V 5 HOH C 5 405 37 HOH HOH . V 5 HOH C 6 406 5 HOH HOH . V 5 HOH C 7 407 121 HOH HOH . V 5 HOH C 8 408 317 HOH HOH . V 5 HOH C 9 409 24 HOH HOH . V 5 HOH C 10 410 86 HOH HOH . V 5 HOH C 11 411 311 HOH HOH . V 5 HOH C 12 412 229 HOH HOH . V 5 HOH C 13 413 139 HOH HOH . V 5 HOH C 14 414 79 HOH HOH . V 5 HOH C 15 415 106 HOH HOH . V 5 HOH C 16 416 122 HOH HOH . V 5 HOH C 17 417 65 HOH HOH . V 5 HOH C 18 418 108 HOH HOH . V 5 HOH C 19 419 9 HOH HOH . V 5 HOH C 20 420 16 HOH HOH . V 5 HOH C 21 421 39 HOH HOH . V 5 HOH C 22 422 27 HOH HOH . V 5 HOH C 23 423 241 HOH HOH . V 5 HOH C 24 424 26 HOH HOH . V 5 HOH C 25 425 67 HOH HOH . V 5 HOH C 26 426 25 HOH HOH . V 5 HOH C 27 427 34 HOH HOH . V 5 HOH C 28 428 184 HOH HOH . V 5 HOH C 29 429 284 HOH HOH . V 5 HOH C 30 430 69 HOH HOH . V 5 HOH C 31 431 42 HOH HOH . V 5 HOH C 32 432 204 HOH HOH . V 5 HOH C 33 433 78 HOH HOH . V 5 HOH C 34 434 129 HOH HOH . V 5 HOH C 35 435 52 HOH HOH . V 5 HOH C 36 436 140 HOH HOH . V 5 HOH C 37 437 170 HOH HOH . V 5 HOH C 38 438 61 HOH HOH . V 5 HOH C 39 439 176 HOH HOH . V 5 HOH C 40 440 163 HOH HOH . V 5 HOH C 41 441 70 HOH HOH . V 5 HOH C 42 442 142 HOH HOH . V 5 HOH C 43 443 141 HOH HOH . V 5 HOH C 44 444 85 HOH HOH . V 5 HOH C 45 445 148 HOH HOH . V 5 HOH C 46 446 165 HOH HOH . V 5 HOH C 47 447 46 HOH HOH . V 5 HOH C 48 448 125 HOH HOH . V 5 HOH C 49 449 73 HOH HOH . V 5 HOH C 50 450 47 HOH HOH . V 5 HOH C 51 451 56 HOH HOH . V 5 HOH C 52 452 257 HOH HOH . V 5 HOH C 53 453 88 HOH HOH . V 5 HOH C 54 454 74 HOH HOH . V 5 HOH C 55 455 128 HOH HOH . V 5 HOH C 56 456 263 HOH HOH . V 5 HOH C 57 457 60 HOH HOH . V 5 HOH C 58 458 312 HOH HOH . V 5 HOH C 59 459 226 HOH HOH . V 5 HOH C 60 460 216 HOH HOH . V 5 HOH C 61 461 191 HOH HOH . V 5 HOH C 62 462 326 HOH HOH . V 5 HOH C 63 463 181 HOH HOH . V 5 HOH C 64 464 298 HOH HOH . V 5 HOH C 65 465 51 HOH HOH . V 5 HOH C 66 466 169 HOH HOH . V 5 HOH C 67 467 36 HOH HOH . V 5 HOH C 68 468 81 HOH HOH . V 5 HOH C 69 469 273 HOH HOH . V 5 HOH C 70 470 82 HOH HOH . V 5 HOH C 71 471 94 HOH HOH . V 5 HOH C 72 472 323 HOH HOH . V 5 HOH C 73 473 96 HOH HOH . V 5 HOH C 74 474 320 HOH HOH . V 5 HOH C 75 475 190 HOH HOH . V 5 HOH C 76 476 321 HOH HOH . V 5 HOH C 77 477 318 HOH HOH . V 5 HOH C 78 478 178 HOH HOH . V 5 HOH C 79 479 265 HOH HOH . V 5 HOH C 80 480 89 HOH HOH . V 5 HOH C 81 481 164 HOH HOH . V 5 HOH C 82 482 93 HOH HOH . V 5 HOH C 83 483 90 HOH HOH . V 5 HOH C 84 484 315 HOH HOH . W 5 HOH D 1 101 329 HOH HOH . W 5 HOH D 2 102 146 HOH HOH . W 5 HOH D 3 103 316 HOH HOH . X 5 HOH F 1 401 117 HOH HOH . X 5 HOH F 2 402 230 HOH HOH . X 5 HOH F 3 403 118 HOH HOH . X 5 HOH F 4 404 304 HOH HOH . X 5 HOH F 5 405 11 HOH HOH . X 5 HOH F 6 406 328 HOH HOH . X 5 HOH F 7 407 112 HOH HOH . X 5 HOH F 8 408 160 HOH HOH . X 5 HOH F 9 409 161 HOH HOH . X 5 HOH F 10 410 275 HOH HOH . X 5 HOH F 11 411 13 HOH HOH . X 5 HOH F 12 412 84 HOH HOH . X 5 HOH F 13 413 291 HOH HOH . X 5 HOH F 14 414 180 HOH HOH . X 5 HOH F 15 415 30 HOH HOH . X 5 HOH F 16 416 62 HOH HOH . X 5 HOH F 17 417 126 HOH HOH . X 5 HOH F 18 418 225 HOH HOH . X 5 HOH F 19 419 20 HOH HOH . X 5 HOH F 20 420 119 HOH HOH . X 5 HOH F 21 421 138 HOH HOH . X 5 HOH F 22 422 185 HOH HOH . X 5 HOH F 23 423 101 HOH HOH . X 5 HOH F 24 424 234 HOH HOH . X 5 HOH F 25 425 150 HOH HOH . X 5 HOH F 26 426 18 HOH HOH . X 5 HOH F 27 427 35 HOH HOH . X 5 HOH F 28 428 231 HOH HOH . X 5 HOH F 29 429 244 HOH HOH . X 5 HOH F 30 430 336 HOH HOH . X 5 HOH F 31 431 233 HOH HOH . X 5 HOH F 32 432 53 HOH HOH . X 5 HOH F 33 433 154 HOH HOH . X 5 HOH F 34 434 80 HOH HOH . X 5 HOH F 35 435 130 HOH HOH . X 5 HOH F 36 436 153 HOH HOH . X 5 HOH F 37 437 102 HOH HOH . X 5 HOH F 38 438 188 HOH HOH . X 5 HOH F 39 439 99 HOH HOH . X 5 HOH F 40 440 193 HOH HOH . X 5 HOH F 41 441 262 HOH HOH . X 5 HOH F 42 442 158 HOH HOH . X 5 HOH F 43 443 168 HOH HOH . X 5 HOH F 44 444 290 HOH HOH . X 5 HOH F 45 445 203 HOH HOH . X 5 HOH F 46 446 72 HOH HOH . X 5 HOH F 47 447 301 HOH HOH . X 5 HOH F 48 448 331 HOH HOH . Y 5 HOH G 1 201 239 HOH HOH . Y 5 HOH G 2 202 23 HOH HOH . Y 5 HOH G 3 203 45 HOH HOH . Y 5 HOH G 4 204 270 HOH HOH . Z 5 HOH J 1 401 50 HOH HOH . Z 5 HOH J 2 402 4 HOH HOH . Z 5 HOH J 3 403 3 HOH HOH . Z 5 HOH J 4 404 17 HOH HOH . Z 5 HOH J 5 405 8 HOH HOH . Z 5 HOH J 6 406 151 HOH HOH . Z 5 HOH J 7 407 57 HOH HOH . Z 5 HOH J 8 408 115 HOH HOH . Z 5 HOH J 9 409 71 HOH HOH . Z 5 HOH J 10 410 6 HOH HOH . Z 5 HOH J 11 411 255 HOH HOH . Z 5 HOH J 12 412 299 HOH HOH . Z 5 HOH J 13 413 28 HOH HOH . Z 5 HOH J 14 414 124 HOH HOH . Z 5 HOH J 15 415 237 HOH HOH . Z 5 HOH J 16 416 110 HOH HOH . Z 5 HOH J 17 417 302 HOH HOH . Z 5 HOH J 18 418 64 HOH HOH . Z 5 HOH J 19 419 95 HOH HOH . Z 5 HOH J 20 420 111 HOH HOH . Z 5 HOH J 21 421 120 HOH HOH . Z 5 HOH J 22 422 266 HOH HOH . Z 5 HOH J 23 423 54 HOH HOH . Z 5 HOH J 24 424 187 HOH HOH . Z 5 HOH J 25 425 199 HOH HOH . Z 5 HOH J 26 426 215 HOH HOH . Z 5 HOH J 27 427 293 HOH HOH . Z 5 HOH J 28 428 274 HOH HOH . Z 5 HOH J 29 429 217 HOH HOH . Z 5 HOH J 30 430 205 HOH HOH . Z 5 HOH J 31 431 105 HOH HOH . Z 5 HOH J 32 432 245 HOH HOH . Z 5 HOH J 33 433 249 HOH HOH . Z 5 HOH J 34 434 109 HOH HOH . Z 5 HOH J 35 435 156 HOH HOH . Z 5 HOH J 36 436 279 HOH HOH . Z 5 HOH J 37 437 272 HOH HOH . Z 5 HOH J 38 438 171 HOH HOH . Z 5 HOH J 39 439 307 HOH HOH . Z 5 HOH J 40 440 314 HOH HOH . Z 5 HOH J 41 441 256 HOH HOH . Z 5 HOH J 42 442 313 HOH HOH . Z 5 HOH J 43 443 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . P 4 3.718 59.485 12.563 1 61.21 ? C1 GOL 302 F 1 HETATM 2 O O1 GOL . . . P 4 2.548 59.043 11.894 1 58.01 ? O1 GOL 302 F 1 HETATM 3 C C2 GOL . . . P 4 4.376 60.655 11.716 1 59.78 ? C2 GOL 302 F 1 HETATM 4 O O2 GOL . . . P 4 5.328 61.363 12.441 1 55.24 ? O2 GOL 302 F 1 HETATM 5 C C3 GOL . . . P 4 4.978 59.993 10.407 1 66.13 ? C3 GOL 302 F 1 HETATM 6 O O3 GOL . . . P 4 6.402 60.059 10.447 1 67.75 ? O3 GOL 302 F 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #