data_6J4S # _model_server_result.job_id J19axQZ0Zp369rcX4qVxYg _model_server_result.datetime_utc '2024-11-07 16:45:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6J4S # _exptl.entry_id 6J4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J4S _cell.length_a 74.198 _cell.length_b 111.523 _cell.length_c 127.151 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6J4S _atom_sites.fract_transf_matrix[1][1] 0.013477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 3 GOL A 1 402 2 GOL GOL . E 3 GOL A 1 403 3 GOL GOL . F 4 PO4 A 1 404 1 PO4 PO4 . G 5 HOH A 1 501 47 HOH HOH . G 5 HOH A 2 502 5 HOH HOH . G 5 HOH A 3 503 64 HOH HOH . G 5 HOH A 4 504 63 HOH HOH . G 5 HOH A 5 505 35 HOH HOH . G 5 HOH A 6 506 92 HOH HOH . G 5 HOH A 7 507 2 HOH HOH . G 5 HOH A 8 508 84 HOH HOH . G 5 HOH A 9 509 17 HOH HOH . G 5 HOH A 10 510 66 HOH HOH . G 5 HOH A 11 511 48 HOH HOH . G 5 HOH A 12 512 7 HOH HOH . G 5 HOH A 13 513 10 HOH HOH . G 5 HOH A 14 514 36 HOH HOH . G 5 HOH A 15 515 60 HOH HOH . G 5 HOH A 16 516 14 HOH HOH . G 5 HOH A 17 517 71 HOH HOH . G 5 HOH A 18 518 15 HOH HOH . G 5 HOH A 19 519 76 HOH HOH . G 5 HOH A 20 520 58 HOH HOH . G 5 HOH A 21 521 68 HOH HOH . G 5 HOH A 22 522 28 HOH HOH . G 5 HOH A 23 523 21 HOH HOH . G 5 HOH A 24 524 3 HOH HOH . G 5 HOH A 25 525 87 HOH HOH . G 5 HOH A 26 526 12 HOH HOH . G 5 HOH A 27 527 23 HOH HOH . G 5 HOH A 28 528 4 HOH HOH . G 5 HOH A 29 529 25 HOH HOH . G 5 HOH A 30 530 20 HOH HOH . G 5 HOH A 31 531 62 HOH HOH . G 5 HOH A 32 532 18 HOH HOH . G 5 HOH A 33 533 16 HOH HOH . G 5 HOH A 34 534 38 HOH HOH . G 5 HOH A 35 535 8 HOH HOH . G 5 HOH A 36 536 78 HOH HOH . G 5 HOH A 37 537 52 HOH HOH . G 5 HOH A 38 538 81 HOH HOH . G 5 HOH A 39 539 22 HOH HOH . G 5 HOH A 40 540 40 HOH HOH . G 5 HOH A 41 541 27 HOH HOH . G 5 HOH A 42 542 33 HOH HOH . G 5 HOH A 43 543 74 HOH HOH . G 5 HOH A 44 544 30 HOH HOH . G 5 HOH A 45 545 55 HOH HOH . G 5 HOH A 46 546 51 HOH HOH . G 5 HOH A 47 547 13 HOH HOH . G 5 HOH A 48 548 43 HOH HOH . G 5 HOH A 49 549 82 HOH HOH . G 5 HOH A 50 550 83 HOH HOH . G 5 HOH A 51 551 72 HOH HOH . G 5 HOH A 52 552 96 HOH HOH . G 5 HOH A 53 553 95 HOH HOH . G 5 HOH A 54 554 39 HOH HOH . G 5 HOH A 55 555 32 HOH HOH . G 5 HOH A 56 556 11 HOH HOH . G 5 HOH A 57 557 89 HOH HOH . G 5 HOH A 58 558 93 HOH HOH . G 5 HOH A 59 559 44 HOH HOH . G 5 HOH A 60 560 34 HOH HOH . G 5 HOH A 61 561 94 HOH HOH . G 5 HOH A 62 562 85 HOH HOH . H 5 HOH B 1 101 41 HOH HOH . H 5 HOH B 2 102 31 HOH HOH . H 5 HOH B 3 103 9 HOH HOH . H 5 HOH B 4 104 73 HOH HOH . H 5 HOH B 5 105 53 HOH HOH . H 5 HOH B 6 106 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 5.435 -30.289 11.17 1 43.79 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . D 3 6.14 -29.161 10.638 1 48.97 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . D 3 6.289 -31.606 10.946 1 42.07 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . D 3 6.65 -32.276 12.149 1 38.81 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . D 3 5.471 -32.501 9.92 1 39.26 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . D 3 6.362 -33.505 9.408 1 38.21 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #