data_6J4T # _model_server_result.job_id WZxod1qc2m2L1Pw350jDhg _model_server_result.datetime_utc '2024-11-25 06:33:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6J4T # _exptl.entry_id 6J4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J4T _cell.length_a 50.63 _cell.length_b 81.921 _cell.length_c 87.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 217 A HIS 217 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc2 A OD1 ASN 295 A ASN 295 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 6J4T _atom_sites.fract_transf_matrix[1][1] 0.019751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 401 401 IMP IMP . C 3 ZN A 1 402 1 ZN ZN . D 4 HOH A 1 501 139 HOH HOH . D 4 HOH A 2 502 11 HOH HOH . D 4 HOH A 3 503 81 HOH HOH . D 4 HOH A 4 504 135 HOH HOH . D 4 HOH A 5 505 158 HOH HOH . D 4 HOH A 6 506 187 HOH HOH . D 4 HOH A 7 507 67 HOH HOH . D 4 HOH A 8 508 202 HOH HOH . D 4 HOH A 9 509 17 HOH HOH . D 4 HOH A 10 510 83 HOH HOH . D 4 HOH A 11 511 37 HOH HOH . D 4 HOH A 12 512 78 HOH HOH . D 4 HOH A 13 513 29 HOH HOH . D 4 HOH A 14 514 74 HOH HOH . D 4 HOH A 15 515 112 HOH HOH . D 4 HOH A 16 516 184 HOH HOH . D 4 HOH A 17 517 167 HOH HOH . D 4 HOH A 18 518 111 HOH HOH . D 4 HOH A 19 519 51 HOH HOH . D 4 HOH A 20 520 49 HOH HOH . D 4 HOH A 21 521 30 HOH HOH . D 4 HOH A 22 522 131 HOH HOH . D 4 HOH A 23 523 42 HOH HOH . D 4 HOH A 24 524 132 HOH HOH . D 4 HOH A 25 525 87 HOH HOH . D 4 HOH A 26 526 130 HOH HOH . D 4 HOH A 27 527 196 HOH HOH . D 4 HOH A 28 528 58 HOH HOH . D 4 HOH A 29 529 199 HOH HOH . D 4 HOH A 30 530 5 HOH HOH . D 4 HOH A 31 531 194 HOH HOH . D 4 HOH A 32 532 200 HOH HOH . D 4 HOH A 33 533 149 HOH HOH . D 4 HOH A 34 534 138 HOH HOH . D 4 HOH A 35 535 3 HOH HOH . D 4 HOH A 36 536 4 HOH HOH . D 4 HOH A 37 537 19 HOH HOH . D 4 HOH A 38 538 142 HOH HOH . D 4 HOH A 39 539 43 HOH HOH . D 4 HOH A 40 540 54 HOH HOH . D 4 HOH A 41 541 10 HOH HOH . D 4 HOH A 42 542 126 HOH HOH . D 4 HOH A 43 543 99 HOH HOH . D 4 HOH A 44 544 154 HOH HOH . D 4 HOH A 45 545 28 HOH HOH . D 4 HOH A 46 546 91 HOH HOH . D 4 HOH A 47 547 34 HOH HOH . D 4 HOH A 48 548 77 HOH HOH . D 4 HOH A 49 549 73 HOH HOH . D 4 HOH A 50 550 145 HOH HOH . D 4 HOH A 51 551 188 HOH HOH . D 4 HOH A 52 552 40 HOH HOH . D 4 HOH A 53 553 59 HOH HOH . D 4 HOH A 54 554 175 HOH HOH . D 4 HOH A 55 555 13 HOH HOH . D 4 HOH A 56 556 53 HOH HOH . D 4 HOH A 57 557 110 HOH HOH . D 4 HOH A 58 558 7 HOH HOH . D 4 HOH A 59 559 120 HOH HOH . D 4 HOH A 60 560 20 HOH HOH . D 4 HOH A 61 561 72 HOH HOH . D 4 HOH A 62 562 164 HOH HOH . D 4 HOH A 63 563 156 HOH HOH . D 4 HOH A 64 564 38 HOH HOH . D 4 HOH A 65 565 9 HOH HOH . D 4 HOH A 66 566 147 HOH HOH . D 4 HOH A 67 567 122 HOH HOH . D 4 HOH A 68 568 163 HOH HOH . D 4 HOH A 69 569 160 HOH HOH . D 4 HOH A 70 570 57 HOH HOH . D 4 HOH A 71 571 2 HOH HOH . D 4 HOH A 72 572 56 HOH HOH . D 4 HOH A 73 573 105 HOH HOH . D 4 HOH A 74 574 24 HOH HOH . D 4 HOH A 75 575 172 HOH HOH . D 4 HOH A 76 576 26 HOH HOH . D 4 HOH A 77 577 177 HOH HOH . D 4 HOH A 78 578 151 HOH HOH . D 4 HOH A 79 579 152 HOH HOH . D 4 HOH A 80 580 21 HOH HOH . D 4 HOH A 81 581 125 HOH HOH . D 4 HOH A 82 582 190 HOH HOH . D 4 HOH A 83 583 118 HOH HOH . D 4 HOH A 84 584 198 HOH HOH . D 4 HOH A 85 585 89 HOH HOH . D 4 HOH A 86 586 144 HOH HOH . D 4 HOH A 87 587 162 HOH HOH . D 4 HOH A 88 588 121 HOH HOH . D 4 HOH A 89 589 33 HOH HOH . D 4 HOH A 90 590 201 HOH HOH . D 4 HOH A 91 591 178 HOH HOH . D 4 HOH A 92 592 6 HOH HOH . D 4 HOH A 93 593 46 HOH HOH . D 4 HOH A 94 594 100 HOH HOH . D 4 HOH A 95 595 102 HOH HOH . D 4 HOH A 96 596 85 HOH HOH . D 4 HOH A 97 597 55 HOH HOH . D 4 HOH A 98 598 174 HOH HOH . D 4 HOH A 99 599 191 HOH HOH . D 4 HOH A 100 600 153 HOH HOH . D 4 HOH A 101 601 134 HOH HOH . D 4 HOH A 102 602 18 HOH HOH . D 4 HOH A 103 603 41 HOH HOH . D 4 HOH A 104 604 86 HOH HOH . D 4 HOH A 105 605 168 HOH HOH . D 4 HOH A 106 606 76 HOH HOH . D 4 HOH A 107 607 179 HOH HOH . D 4 HOH A 108 608 25 HOH HOH . D 4 HOH A 109 609 141 HOH HOH . D 4 HOH A 110 610 65 HOH HOH . D 4 HOH A 111 611 66 HOH HOH . D 4 HOH A 112 612 161 HOH HOH . D 4 HOH A 113 613 44 HOH HOH . D 4 HOH A 114 614 192 HOH HOH . D 4 HOH A 115 615 97 HOH HOH . D 4 HOH A 116 616 52 HOH HOH . D 4 HOH A 117 617 195 HOH HOH . D 4 HOH A 118 618 137 HOH HOH . D 4 HOH A 119 619 61 HOH HOH . D 4 HOH A 120 620 31 HOH HOH . D 4 HOH A 121 621 113 HOH HOH . D 4 HOH A 122 622 82 HOH HOH . D 4 HOH A 123 623 16 HOH HOH . D 4 HOH A 124 624 64 HOH HOH . D 4 HOH A 125 625 68 HOH HOH . D 4 HOH A 126 626 150 HOH HOH . D 4 HOH A 127 627 157 HOH HOH . D 4 HOH A 128 628 186 HOH HOH . D 4 HOH A 129 629 133 HOH HOH . D 4 HOH A 130 630 22 HOH HOH . D 4 HOH A 131 631 170 HOH HOH . D 4 HOH A 132 632 80 HOH HOH . D 4 HOH A 133 633 27 HOH HOH . D 4 HOH A 134 634 143 HOH HOH . D 4 HOH A 135 635 104 HOH HOH . D 4 HOH A 136 636 155 HOH HOH . D 4 HOH A 137 637 183 HOH HOH . D 4 HOH A 138 638 60 HOH HOH . D 4 HOH A 139 639 114 HOH HOH . D 4 HOH A 140 640 48 HOH HOH . D 4 HOH A 141 641 119 HOH HOH . D 4 HOH A 142 642 181 HOH HOH . D 4 HOH A 143 643 108 HOH HOH . D 4 HOH A 144 644 159 HOH HOH . D 4 HOH A 145 645 69 HOH HOH . D 4 HOH A 146 646 197 HOH HOH . D 4 HOH A 147 647 62 HOH HOH . D 4 HOH A 148 648 71 HOH HOH . D 4 HOH A 149 649 93 HOH HOH . D 4 HOH A 150 650 50 HOH HOH . D 4 HOH A 151 651 39 HOH HOH . D 4 HOH A 152 652 14 HOH HOH . D 4 HOH A 153 653 12 HOH HOH . D 4 HOH A 154 654 115 HOH HOH . D 4 HOH A 155 655 32 HOH HOH . D 4 HOH A 156 656 84 HOH HOH . D 4 HOH A 157 657 15 HOH HOH . D 4 HOH A 158 658 45 HOH HOH . D 4 HOH A 159 659 182 HOH HOH . D 4 HOH A 160 660 169 HOH HOH . D 4 HOH A 161 661 70 HOH HOH . D 4 HOH A 162 662 193 HOH HOH . D 4 HOH A 163 663 165 HOH HOH . D 4 HOH A 164 664 47 HOH HOH . D 4 HOH A 165 665 206 HOH HOH . D 4 HOH A 166 666 101 HOH HOH . D 4 HOH A 167 667 116 HOH HOH . D 4 HOH A 168 668 205 HOH HOH . D 4 HOH A 169 669 173 HOH HOH . D 4 HOH A 170 670 63 HOH HOH . D 4 HOH A 171 671 79 HOH HOH . D 4 HOH A 172 672 176 HOH HOH . D 4 HOH A 173 673 207 HOH HOH . D 4 HOH A 174 674 127 HOH HOH . D 4 HOH A 175 675 88 HOH HOH . D 4 HOH A 176 676 171 HOH HOH . D 4 HOH A 177 677 107 HOH HOH . D 4 HOH A 178 678 204 HOH HOH . D 4 HOH A 179 679 129 HOH HOH . D 4 HOH A 180 680 185 HOH HOH . D 4 HOH A 181 681 117 HOH HOH . D 4 HOH A 182 682 203 HOH HOH . D 4 HOH A 183 683 94 HOH HOH . D 4 HOH A 184 684 103 HOH HOH . D 4 HOH A 185 685 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 -7.119 -0.177 8.299 1 15.52 ? P IMP 401 A 1 HETATM 2 O O1P IMP . . . B 2 -8.133 0.067 9.393 1 15.67 ? O1P IMP 401 A 1 HETATM 3 O O2P IMP . . . B 2 -5.73 0.436 8.618 1 15.11 ? O2P IMP 401 A 1 HETATM 4 O O3P IMP . . . B 2 -7.018 -1.636 7.981 1 14.7 ? O3P IMP 401 A 1 HETATM 5 O O5' IMP . . . B 2 -7.782 0.588 7.068 1 15.31 ? O5' IMP 401 A 1 HETATM 6 C C5' IMP . . . B 2 -6.999 1.023 5.919 1 16.16 ? C5' IMP 401 A 1 HETATM 7 C C4' IMP . . . B 2 -6.385 -0.133 5.167 1 16.57 ? C4' IMP 401 A 1 HETATM 8 O O4' IMP . . . B 2 -7.415 -0.87 4.444 1 16.13 ? O4' IMP 401 A 1 HETATM 9 C C3' IMP . . . B 2 -5.375 0.313 4.094 1 17.78 ? C3' IMP 401 A 1 HETATM 10 O O3' IMP . . . B 2 -4.048 0.47 4.581 1 18.91 ? O3' IMP 401 A 1 HETATM 11 C C2' IMP . . . B 2 -5.468 -0.812 3.057 1 16.63 ? C2' IMP 401 A 1 HETATM 12 O O2' IMP . . . B 2 -4.636 -1.905 3.324 1 18.47 ? O2' IMP 401 A 1 HETATM 13 C C1' IMP . . . B 2 -6.939 -1.23 3.156 1 14.52 ? C1' IMP 401 A 1 HETATM 14 N N9 IMP . . . B 2 -7.784 -0.638 2.136 1 14.67 ? N9 IMP 401 A 1 HETATM 15 C C8 IMP . . . B 2 -8.742 0.341 2.267 1 13.34 ? C8 IMP 401 A 1 HETATM 16 N N7 IMP . . . B 2 -9.316 0.666 1.14 1 15.04 ? N7 IMP 401 A 1 HETATM 17 C C5 IMP . . . B 2 -8.768 -0.195 0.205 1 15.54 ? C5 IMP 401 A 1 HETATM 18 C C6 IMP . . . B 2 -9.014 -0.326 -1.2 1 17.87 ? C6 IMP 401 A 1 HETATM 19 O O6 IMP . . . B 2 -9.778 0.324 -1.92 1 22.8 ? O6 IMP 401 A 1 HETATM 20 N N1 IMP . . . B 2 -8.21 -1.336 -1.733 1 17.59 ? N1 IMP 401 A 1 HETATM 21 C C2 IMP . . . B 2 -7.31 -2.062 -1.068 1 16.55 ? C2 IMP 401 A 1 HETATM 22 N N3 IMP . . . B 2 -7.076 -1.963 0.216 1 15.81 ? N3 IMP 401 A 1 HETATM 23 C C4 IMP . . . B 2 -7.818 -0.998 0.805 1 15.59 ? C4 IMP 401 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #