data_6J4V # _model_server_result.job_id dkl_7WTVa-HZ_F7G0SkBXQ _model_server_result.datetime_utc '2024-11-04 22:50:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":305}' # _entry.id 6J4V # _exptl.entry_id 6J4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J4V _cell.length_a 82.281 _cell.length_b 122.413 _cell.length_c 194.269 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 113 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 158 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 20 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 450 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.072 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6J4V _atom_sites.fract_transf_matrix[1][1] 0.012153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 A 1 301 1 PO4 PO4 . E 4 PO4 A 1 302 2 PO4 PO4 . F 5 GOL A 1 303 1 GOL GOL . G 5 GOL A 1 304 2 GOL GOL . H 5 GOL A 1 305 3 GOL GOL . I 5 GOL A 1 306 4 GOL GOL . J 6 HOH A 1 401 193 HOH HOH . J 6 HOH A 2 402 260 HOH HOH . J 6 HOH A 3 403 69 HOH HOH . J 6 HOH A 4 404 173 HOH HOH . J 6 HOH A 5 405 22 HOH HOH . J 6 HOH A 6 406 116 HOH HOH . J 6 HOH A 7 407 84 HOH HOH . J 6 HOH A 8 408 3 HOH HOH . J 6 HOH A 9 409 87 HOH HOH . J 6 HOH A 10 410 239 HOH HOH . J 6 HOH A 11 411 81 HOH HOH . J 6 HOH A 12 412 64 HOH HOH . J 6 HOH A 13 413 26 HOH HOH . J 6 HOH A 14 414 105 HOH HOH . J 6 HOH A 15 415 93 HOH HOH . J 6 HOH A 16 416 150 HOH HOH . J 6 HOH A 17 417 236 HOH HOH . J 6 HOH A 18 418 136 HOH HOH . J 6 HOH A 19 419 255 HOH HOH . J 6 HOH A 20 420 59 HOH HOH . J 6 HOH A 21 421 11 HOH HOH . J 6 HOH A 22 422 96 HOH HOH . J 6 HOH A 23 423 1 HOH HOH . J 6 HOH A 24 424 24 HOH HOH . J 6 HOH A 25 425 47 HOH HOH . J 6 HOH A 26 426 57 HOH HOH . J 6 HOH A 27 427 240 HOH HOH . J 6 HOH A 28 428 121 HOH HOH . J 6 HOH A 29 429 114 HOH HOH . J 6 HOH A 30 430 46 HOH HOH . J 6 HOH A 31 431 95 HOH HOH . J 6 HOH A 32 432 252 HOH HOH . J 6 HOH A 33 433 152 HOH HOH . J 6 HOH A 34 434 25 HOH HOH . J 6 HOH A 35 435 6 HOH HOH . J 6 HOH A 36 436 42 HOH HOH . J 6 HOH A 37 437 169 HOH HOH . J 6 HOH A 38 438 54 HOH HOH . J 6 HOH A 39 439 15 HOH HOH . J 6 HOH A 40 440 52 HOH HOH . J 6 HOH A 41 441 16 HOH HOH . J 6 HOH A 42 442 186 HOH HOH . J 6 HOH A 43 443 7 HOH HOH . J 6 HOH A 44 444 10 HOH HOH . J 6 HOH A 45 445 34 HOH HOH . J 6 HOH A 46 446 51 HOH HOH . J 6 HOH A 47 447 89 HOH HOH . J 6 HOH A 48 448 75 HOH HOH . J 6 HOH A 49 449 56 HOH HOH . J 6 HOH A 50 450 225 HOH HOH . J 6 HOH A 51 451 30 HOH HOH . J 6 HOH A 52 452 4 HOH HOH . J 6 HOH A 53 453 12 HOH HOH . J 6 HOH A 54 454 36 HOH HOH . J 6 HOH A 55 455 110 HOH HOH . J 6 HOH A 56 456 80 HOH HOH . J 6 HOH A 57 457 40 HOH HOH . J 6 HOH A 58 458 9 HOH HOH . J 6 HOH A 59 459 60 HOH HOH . J 6 HOH A 60 460 258 HOH HOH . J 6 HOH A 61 461 38 HOH HOH . J 6 HOH A 62 462 154 HOH HOH . J 6 HOH A 63 463 157 HOH HOH . J 6 HOH A 64 464 78 HOH HOH . J 6 HOH A 65 465 14 HOH HOH . J 6 HOH A 66 466 112 HOH HOH . J 6 HOH A 67 467 19 HOH HOH . J 6 HOH A 68 468 77 HOH HOH . J 6 HOH A 69 469 20 HOH HOH . J 6 HOH A 70 470 55 HOH HOH . J 6 HOH A 71 471 27 HOH HOH . J 6 HOH A 72 472 134 HOH HOH . J 6 HOH A 73 473 5 HOH HOH . J 6 HOH A 74 474 68 HOH HOH . J 6 HOH A 75 475 2 HOH HOH . J 6 HOH A 76 476 250 HOH HOH . J 6 HOH A 77 477 41 HOH HOH . J 6 HOH A 78 478 117 HOH HOH . J 6 HOH A 79 479 33 HOH HOH . J 6 HOH A 80 480 179 HOH HOH . J 6 HOH A 81 481 49 HOH HOH . J 6 HOH A 82 482 17 HOH HOH . J 6 HOH A 83 483 220 HOH HOH . J 6 HOH A 84 484 130 HOH HOH . J 6 HOH A 85 485 13 HOH HOH . J 6 HOH A 86 486 67 HOH HOH . J 6 HOH A 87 487 178 HOH HOH . J 6 HOH A 88 488 62 HOH HOH . J 6 HOH A 89 489 83 HOH HOH . J 6 HOH A 90 490 256 HOH HOH . J 6 HOH A 91 491 72 HOH HOH . J 6 HOH A 92 492 45 HOH HOH . J 6 HOH A 93 493 23 HOH HOH . J 6 HOH A 94 494 207 HOH HOH . J 6 HOH A 95 495 251 HOH HOH . J 6 HOH A 96 496 138 HOH HOH . J 6 HOH A 97 497 107 HOH HOH . J 6 HOH A 98 498 139 HOH HOH . J 6 HOH A 99 499 43 HOH HOH . J 6 HOH A 100 500 111 HOH HOH . J 6 HOH A 101 501 214 HOH HOH . J 6 HOH A 102 502 76 HOH HOH . J 6 HOH A 103 503 8 HOH HOH . J 6 HOH A 104 504 243 HOH HOH . J 6 HOH A 105 505 183 HOH HOH . J 6 HOH A 106 506 106 HOH HOH . J 6 HOH A 107 507 65 HOH HOH . J 6 HOH A 108 508 248 HOH HOH . J 6 HOH A 109 509 48 HOH HOH . J 6 HOH A 110 510 115 HOH HOH . J 6 HOH A 111 511 151 HOH HOH . J 6 HOH A 112 512 142 HOH HOH . J 6 HOH A 113 513 91 HOH HOH . J 6 HOH A 114 514 108 HOH HOH . J 6 HOH A 115 515 50 HOH HOH . J 6 HOH A 116 516 175 HOH HOH . J 6 HOH A 117 517 253 HOH HOH . J 6 HOH A 118 518 263 HOH HOH . J 6 HOH A 119 519 137 HOH HOH . J 6 HOH A 120 520 145 HOH HOH . J 6 HOH A 121 521 97 HOH HOH . J 6 HOH A 122 522 208 HOH HOH . J 6 HOH A 123 523 203 HOH HOH . J 6 HOH A 124 524 63 HOH HOH . J 6 HOH A 125 525 128 HOH HOH . J 6 HOH A 126 526 133 HOH HOH . J 6 HOH A 127 527 123 HOH HOH . J 6 HOH A 128 528 127 HOH HOH . J 6 HOH A 129 529 146 HOH HOH . J 6 HOH A 130 530 94 HOH HOH . J 6 HOH A 131 531 39 HOH HOH . J 6 HOH A 132 532 101 HOH HOH . J 6 HOH A 133 533 197 HOH HOH . J 6 HOH A 134 534 29 HOH HOH . J 6 HOH A 135 535 257 HOH HOH . J 6 HOH A 136 536 18 HOH HOH . J 6 HOH A 137 537 104 HOH HOH . J 6 HOH A 138 538 143 HOH HOH . J 6 HOH A 139 539 232 HOH HOH . J 6 HOH A 140 540 102 HOH HOH . J 6 HOH A 141 541 79 HOH HOH . J 6 HOH A 142 542 159 HOH HOH . J 6 HOH A 143 543 195 HOH HOH . J 6 HOH A 144 544 118 HOH HOH . J 6 HOH A 145 545 58 HOH HOH . J 6 HOH A 146 546 163 HOH HOH . J 6 HOH A 147 547 204 HOH HOH . J 6 HOH A 148 548 229 HOH HOH . J 6 HOH A 149 549 44 HOH HOH . J 6 HOH A 150 550 244 HOH HOH . J 6 HOH A 151 551 70 HOH HOH . J 6 HOH A 152 552 148 HOH HOH . J 6 HOH A 153 553 261 HOH HOH . J 6 HOH A 154 554 140 HOH HOH . J 6 HOH A 155 555 155 HOH HOH . J 6 HOH A 156 556 73 HOH HOH . J 6 HOH A 157 557 131 HOH HOH . J 6 HOH A 158 558 189 HOH HOH . J 6 HOH A 159 559 160 HOH HOH . J 6 HOH A 160 560 90 HOH HOH . J 6 HOH A 161 561 158 HOH HOH . J 6 HOH A 162 562 100 HOH HOH . J 6 HOH A 163 563 237 HOH HOH . J 6 HOH A 164 564 126 HOH HOH . J 6 HOH A 165 565 37 HOH HOH . J 6 HOH A 166 566 74 HOH HOH . J 6 HOH A 167 567 129 HOH HOH . J 6 HOH A 168 568 153 HOH HOH . J 6 HOH A 169 569 180 HOH HOH . J 6 HOH A 170 570 209 HOH HOH . J 6 HOH A 171 571 231 HOH HOH . J 6 HOH A 172 572 185 HOH HOH . J 6 HOH A 173 573 245 HOH HOH . J 6 HOH A 174 574 174 HOH HOH . J 6 HOH A 175 575 246 HOH HOH . J 6 HOH A 176 576 188 HOH HOH . J 6 HOH A 177 577 227 HOH HOH . J 6 HOH A 178 578 215 HOH HOH . J 6 HOH A 179 579 182 HOH HOH . J 6 HOH A 180 580 32 HOH HOH . J 6 HOH A 181 581 192 HOH HOH . J 6 HOH A 182 582 200 HOH HOH . J 6 HOH A 183 583 86 HOH HOH . J 6 HOH A 184 584 168 HOH HOH . J 6 HOH A 185 585 221 HOH HOH . J 6 HOH A 186 586 262 HOH HOH . J 6 HOH A 187 587 201 HOH HOH . J 6 HOH A 188 588 92 HOH HOH . J 6 HOH A 189 589 164 HOH HOH . J 6 HOH A 190 590 190 HOH HOH . J 6 HOH A 191 591 217 HOH HOH . J 6 HOH A 192 592 234 HOH HOH . J 6 HOH A 193 593 259 HOH HOH . J 6 HOH A 194 594 35 HOH HOH . J 6 HOH A 195 595 242 HOH HOH . J 6 HOH A 196 596 247 HOH HOH . J 6 HOH A 197 597 224 HOH HOH . J 6 HOH A 198 598 196 HOH HOH . J 6 HOH A 199 599 213 HOH HOH . J 6 HOH A 200 600 226 HOH HOH . J 6 HOH A 201 601 98 HOH HOH . J 6 HOH A 202 602 113 HOH HOH . J 6 HOH A 203 603 205 HOH HOH . J 6 HOH A 204 604 249 HOH HOH . J 6 HOH A 205 605 210 HOH HOH . J 6 HOH A 206 606 144 HOH HOH . J 6 HOH A 207 607 124 HOH HOH . J 6 HOH A 208 608 28 HOH HOH . J 6 HOH A 209 609 88 HOH HOH . J 6 HOH A 210 610 85 HOH HOH . J 6 HOH A 211 611 119 HOH HOH . J 6 HOH A 212 612 187 HOH HOH . J 6 HOH A 213 613 149 HOH HOH . J 6 HOH A 214 614 206 HOH HOH . J 6 HOH A 215 615 212 HOH HOH . J 6 HOH A 216 616 135 HOH HOH . J 6 HOH A 217 617 156 HOH HOH . J 6 HOH A 218 618 171 HOH HOH . J 6 HOH A 219 619 109 HOH HOH . J 6 HOH A 220 620 120 HOH HOH . J 6 HOH A 221 621 199 HOH HOH . J 6 HOH A 222 622 161 HOH HOH . J 6 HOH A 223 623 165 HOH HOH . J 6 HOH A 224 624 166 HOH HOH . J 6 HOH A 225 625 167 HOH HOH . J 6 HOH A 226 626 222 HOH HOH . K 6 HOH B 1 101 228 HOH HOH . K 6 HOH B 2 102 181 HOH HOH . K 6 HOH B 3 103 53 HOH HOH . K 6 HOH B 4 104 147 HOH HOH . K 6 HOH B 5 105 254 HOH HOH . K 6 HOH B 6 106 184 HOH HOH . K 6 HOH B 7 107 238 HOH HOH . K 6 HOH B 8 108 141 HOH HOH . K 6 HOH B 9 109 31 HOH HOH . K 6 HOH B 10 110 82 HOH HOH . K 6 HOH B 11 111 71 HOH HOH . K 6 HOH B 12 112 66 HOH HOH . K 6 HOH B 13 113 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 54.23 31.457 75.395 1 51.44 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . H 5 53.738 32.39 74.456 1 34.45 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . H 5 55.348 32.117 76.26 1 55.92 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . H 5 55.932 33.221 75.63 1 66.91 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . H 5 56.378 30.976 76.512 1 56.91 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . H 5 56.649 30.942 77.885 1 70.26 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #