data_6J5T
#
_model_server_result.job_id            GZ-TbKLHjCr63VMLRp2EXg 
_model_server_result.datetime_utc      '2025-09-04 15:06:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":901}' 
#
_entry.id    6J5T 
#
_exptl.entry_id    6J5T 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6J5T 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentadecameric 
_pdbx_struct_assembly.oligomeric_count      15 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 R N N 
? 5 U N N 
? 5 X N N 
? 5 AA N N 
? 5 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 253 I SER 253 1_555 P P U5P . I U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
covale ? covale2 A OG1 THR 254 I THR 254 1_555 Q P U5P . I U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.642 ? 
covale ? covale3 D OG SER 253 A SER 253 1_555 S P U5P . A U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale4 D OG1 THR 254 A THR 254 1_555 T P U5P . A U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? 
covale ? covale5 G OG SER 253 D SER 253 1_555 V P U5P . D U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale6 G OG1 THR 254 D THR 254 1_555 W P U5P . D U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
covale ? covale7 J OG SER 253 J SER 253 1_555 Y P U5P . J U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale8 J OG1 THR 254 J THR 254 1_555 Z P U5P . J U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
covale ? covale9 M OG SER 253 M SER 253 1_555 BA P U5P . M U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
covale ? covale10 M OG1 THR 254 M THR 254 1_555 CA P U5P . M U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 83 n n 
PG O2G DTP sing 84 n n 
PG O3G DTP sing 85 n n 
PG O3B DTP sing 86 n n 
O2G HOG2 DTP sing 87 n n 
O3G HOG3 DTP sing 88 n n 
PB O1B DTP doub 89 n n 
PB O2B DTP sing 90 n n 
PB O3B DTP sing 91 n n 
PB O3A DTP sing 92 n n 
O2B HOB2 DTP sing 93 n n 
PA O1A DTP doub 94 n n 
PA O2A DTP sing 95 n n 
PA O3A DTP sing 96 n n 
PA O5' DTP sing 97 n n 
O2A HOA2 DTP sing 98 n n 
O5' C5' DTP sing 99 n n 
C5' C4' DTP sing 100 n n 
C5' "H5'1" DTP sing 101 n n 
C5' "H5'2" DTP sing 102 n n 
C4' O4' DTP sing 103 n n 
C4' C3' DTP sing 104 n n 
C4' H4' DTP sing 105 n n 
O4' C1' DTP sing 106 n n 
C3' O3' DTP sing 107 n n 
C3' C2' DTP sing 108 n n 
C3' H3' DTP sing 109 n n 
O3' HO3' DTP sing 110 n n 
C2' C1' DTP sing 111 n n 
C2' "H2'1" DTP sing 112 n n 
C2' "H2'2" DTP sing 113 n n 
C1' N9 DTP sing 114 n n 
C1' H1' DTP sing 115 n n 
N9 C8 DTP sing 116 n y 
N9 C4 DTP sing 117 n y 
C8 N7 DTP doub 118 n y 
C8 H8 DTP sing 119 n n 
N7 C5 DTP sing 120 n y 
C5 C6 DTP sing 121 n y 
C5 C4 DTP doub 122 n y 
C6 N6 DTP sing 123 n n 
C6 N1 DTP doub 124 n y 
N6 HN61 DTP sing 125 n n 
N6 HN62 DTP sing 126 n n 
N1 C2 DTP sing 127 n y 
C2 N3 DTP doub 128 n y 
C2 H2 DTP sing 129 n n 
N3 C4 DTP sing 130 n y 
#
_atom_sites.entry_id                     6J5T 
_atom_sites.fract_transf_matrix[1][1]    0.002546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 4 U5P I 1 501 2 U5P U5P . 
Q 4 U5P I 1 502 1 U5P U5P . 
R 5 DTP G 1 901 901 DTP DTP . 
S 4 U5P A 1 501 2 U5P U5P . 
T 4 U5P A 1 502 1 U5P U5P . 
U 5 DTP C 1 901 901 DTP DTP . 
V 4 U5P D 1 501 2 U5P U5P . 
W 4 U5P D 1 502 1 U5P U5P . 
X 5 DTP F 1 901 901 DTP DTP . 
Y 4 U5P J 1 501 2 U5P U5P . 
Z 4 U5P J 1 502 1 U5P U5P . 
AA 5 DTP L 1 901 901 DTP DTP . 
BA 4 U5P M 1 501 2 U5P U5P . 
CA 4 U5P M 1 502 1 U5P U5P . 
DA 5 DTP O 1 901 901 DTP DTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . U 5 227.767 201.343 177.394 1 84.28 ? PG DTP 901 C 1 
HETATM 2 O O1G DTP . . . U 5 227.71 200.173 178.323 1 84.28 ? O1G DTP 901 C 1 
HETATM 3 O O2G DTP . . . U 5 227.403 202.619 178.073 1 84.28 ? O2G DTP 901 C 1 
HETATM 4 O O3G DTP . . . U 5 227.001 201.123 176.125 1 84.28 ? O3G DTP 901 C 1 
HETATM 5 P PB DTP . . . U 5 229.916 202.17 175.665 1 84.28 ? PB DTP 901 C 1 
HETATM 6 O O1B DTP . . . U 5 229.31 201.491 174.501 1 84.28 ? O1B DTP 901 C 1 
HETATM 7 O O2B DTP . . . U 5 231.389 202.191 175.813 1 84.28 ? O2B DTP 901 C 1 
HETATM 8 O O3B DTP . . . U 5 229.289 201.518 176.976 1 84.28 ? O3B DTP 901 C 1 
HETATM 9 P PA DTP . . . U 5 229.145 204.633 174.473 1 84.28 ? PA DTP 901 C 1 
HETATM 10 O O1A DTP . . . U 5 229.855 204.051 173.303 1 84.28 ? O1A DTP 901 C 1 
HETATM 11 O O2A DTP . . . U 5 227.688 204.912 174.359 1 84.28 ? O2A DTP 901 C 1 
HETATM 12 O O3A DTP . . . U 5 229.369 203.666 175.721 1 84.28 ? O3A DTP 901 C 1 
HETATM 13 O O5' DTP . . . U 5 229.907 205.96 174.923 1 84.28 ? O5' DTP 901 C 1 
HETATM 14 C C5' DTP . . . U 5 229.267 206.854 175.854 1 84.28 ? C5' DTP 901 C 1 
HETATM 15 C C4' DTP . . . U 5 229.469 208.269 175.374 1 84.28 ? C4' DTP 901 C 1 
HETATM 16 O O4' DTP . . . U 5 230.841 208.408 174.955 1 84.28 ? O4' DTP 901 C 1 
HETATM 17 C C3' DTP . . . U 5 228.606 208.676 174.181 1 84.28 ? C3' DTP 901 C 1 
HETATM 18 O O3' DTP . . . U 5 228.135 210.004 174.367 1 84.28 ? O3' DTP 901 C 1 
HETATM 19 C C2' DTP . . . U 5 229.592 208.624 173.021 1 84.28 ? C2' DTP 901 C 1 
HETATM 20 C C1' DTP . . . U 5 230.874 209.06 173.692 1 84.28 ? C1' DTP 901 C 1 
HETATM 21 N N9 DTP . . . U 5 232.053 208.587 173.006 1 84.28 ? N9 DTP 901 C 1 
HETATM 22 C C8 DTP . . . U 5 232.632 207.358 173.122 1 84.28 ? C8 DTP 901 C 1 
HETATM 23 N N7 DTP . . . U 5 233.708 207.233 172.384 1 84.28 ? N7 DTP 901 C 1 
HETATM 24 C C5 DTP . . . U 5 233.835 208.456 171.744 1 84.28 ? C5 DTP 901 C 1 
HETATM 25 C C6 DTP . . . U 5 234.77 208.958 170.824 1 84.28 ? C6 DTP 901 C 1 
HETATM 26 N N6 DTP . . . U 5 235.809 208.265 170.373 1 84.28 ? N6 DTP 901 C 1 
HETATM 27 N N1 DTP . . . U 5 234.596 210.226 170.388 1 84.28 ? N1 DTP 901 C 1 
HETATM 28 C C2 DTP . . . U 5 233.551 210.923 170.848 1 84.28 ? C2 DTP 901 C 1 
HETATM 29 N N3 DTP . . . U 5 232.611 210.555 171.711 1 84.28 ? N3 DTP 901 C 1 
HETATM 30 C C4 DTP . . . U 5 232.815 209.297 172.123 1 84.28 ? C4 DTP 901 C 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    88 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#