data_6J5T
#
_model_server_result.job_id            O1pQaS4nBI0m4JJkb8T7Cg 
_model_server_result.datetime_utc      '2025-09-04 14:56:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":901}' 
#
_entry.id    6J5T 
#
_exptl.entry_id    6J5T 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6J5T 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentadecameric 
_pdbx_struct_assembly.oligomeric_count      15 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 R N N 
? 5 U N N 
? 5 X N N 
? 5 AA N N 
? 5 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 253 I SER 253 1_555 P P U5P . I U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
covale ? covale2 A OG1 THR 254 I THR 254 1_555 Q P U5P . I U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.642 ? 
covale ? covale3 D OG SER 253 A SER 253 1_555 S P U5P . A U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale4 D OG1 THR 254 A THR 254 1_555 T P U5P . A U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? 
covale ? covale5 G OG SER 253 D SER 253 1_555 V P U5P . D U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale6 G OG1 THR 254 D THR 254 1_555 W P U5P . D U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
covale ? covale7 J OG SER 253 J SER 253 1_555 Y P U5P . J U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale8 J OG1 THR 254 J THR 254 1_555 Z P U5P . J U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
covale ? covale9 M OG SER 253 M SER 253 1_555 BA P U5P . M U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
covale ? covale10 M OG1 THR 254 M THR 254 1_555 CA P U5P . M U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 83 n n 
PG O2G DTP sing 84 n n 
PG O3G DTP sing 85 n n 
PG O3B DTP sing 86 n n 
O2G HOG2 DTP sing 87 n n 
O3G HOG3 DTP sing 88 n n 
PB O1B DTP doub 89 n n 
PB O2B DTP sing 90 n n 
PB O3B DTP sing 91 n n 
PB O3A DTP sing 92 n n 
O2B HOB2 DTP sing 93 n n 
PA O1A DTP doub 94 n n 
PA O2A DTP sing 95 n n 
PA O3A DTP sing 96 n n 
PA O5' DTP sing 97 n n 
O2A HOA2 DTP sing 98 n n 
O5' C5' DTP sing 99 n n 
C5' C4' DTP sing 100 n n 
C5' "H5'1" DTP sing 101 n n 
C5' "H5'2" DTP sing 102 n n 
C4' O4' DTP sing 103 n n 
C4' C3' DTP sing 104 n n 
C4' H4' DTP sing 105 n n 
O4' C1' DTP sing 106 n n 
C3' O3' DTP sing 107 n n 
C3' C2' DTP sing 108 n n 
C3' H3' DTP sing 109 n n 
O3' HO3' DTP sing 110 n n 
C2' C1' DTP sing 111 n n 
C2' "H2'1" DTP sing 112 n n 
C2' "H2'2" DTP sing 113 n n 
C1' N9 DTP sing 114 n n 
C1' H1' DTP sing 115 n n 
N9 C8 DTP sing 116 n y 
N9 C4 DTP sing 117 n y 
C8 N7 DTP doub 118 n y 
C8 H8 DTP sing 119 n n 
N7 C5 DTP sing 120 n y 
C5 C6 DTP sing 121 n y 
C5 C4 DTP doub 122 n y 
C6 N6 DTP sing 123 n n 
C6 N1 DTP doub 124 n y 
N6 HN61 DTP sing 125 n n 
N6 HN62 DTP sing 126 n n 
N1 C2 DTP sing 127 n y 
C2 N3 DTP doub 128 n y 
C2 H2 DTP sing 129 n n 
N3 C4 DTP sing 130 n y 
#
_atom_sites.entry_id                     6J5T 
_atom_sites.fract_transf_matrix[1][1]    0.002546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 4 U5P I 1 501 2 U5P U5P . 
Q 4 U5P I 1 502 1 U5P U5P . 
R 5 DTP G 1 901 901 DTP DTP . 
S 4 U5P A 1 501 2 U5P U5P . 
T 4 U5P A 1 502 1 U5P U5P . 
U 5 DTP C 1 901 901 DTP DTP . 
V 4 U5P D 1 501 2 U5P U5P . 
W 4 U5P D 1 502 1 U5P U5P . 
X 5 DTP F 1 901 901 DTP DTP . 
Y 4 U5P J 1 501 2 U5P U5P . 
Z 4 U5P J 1 502 1 U5P U5P . 
AA 5 DTP L 1 901 901 DTP DTP . 
BA 4 U5P M 1 501 2 U5P U5P . 
CA 4 U5P M 1 502 1 U5P U5P . 
DA 5 DTP O 1 901 901 DTP DTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . X 5 210.83 168.058 177.383 1 84.28 ? PG DTP 901 F 1 
HETATM 2 O O1G DTP . . . X 5 209.716 167.746 178.326 1 84.28 ? O1G DTP 901 F 1 
HETATM 3 O O2G DTP . . . X 5 211.938 168.801 178.045 1 84.28 ? O2G DTP 901 F 1 
HETATM 4 O O3G DTP . . . X 5 210.365 168.713 176.117 1 84.28 ? O3G DTP 901 F 1 
HETATM 5 P PB DTP . . . X 5 212.283 166.302 175.644 1 84.28 ? PB DTP 901 F 1 
HETATM 6 O O1B DTP . . . X 5 211.429 166.624 174.482 1 84.28 ? O1B DTP 901 F 1 
HETATM 7 O O2B DTP . . . X 5 212.825 164.936 175.799 1 84.28 ? O2B DTP 901 F 1 
HETATM 8 O O3B DTP . . . X 5 211.464 166.668 176.959 1 84.28 ? O3B DTP 901 F 1 
HETATM 9 P PA DTP . . . X 5 214.4 167.779 174.454 1 84.28 ? PA DTP 901 F 1 
HETATM 10 O O1A DTP . . . X 5 214.072 166.893 173.304 1 84.28 ? O1A DTP 901 F 1 
HETATM 11 O O2A DTP . . . X 5 214.277 169.251 174.28 1 84.28 ? O2A DTP 901 F 1 
HETATM 12 O O3A DTP . . . X 5 213.487 167.345 175.687 1 84.28 ? O3A DTP 901 F 1 
HETATM 13 O O5' DTP . . . X 5 215.866 167.427 174.973 1 84.28 ? O5' DTP 901 F 1 
HETATM 14 C C5' DTP . . . X 5 216.507 168.344 175.882 1 84.28 ? C5' DTP 901 F 1 
HETATM 15 C C4' DTP . . . X 5 217.913 168.598 175.401 1 84.28 ? C4' DTP 901 F 1 
HETATM 16 O O4' DTP . . . X 5 218.476 167.34 174.979 1 84.28 ? O4' DTP 901 F 1 
HETATM 17 C C3' DTP . . . X 5 218.032 169.548 174.212 1 84.28 ? C3' DTP 901 F 1 
HETATM 18 O O3' DTP . . . X 5 219.163 170.391 174.39 1 84.28 ? O3' DTP 901 F 1 
HETATM 19 C C2' DTP . . . X 5 218.27 168.595 173.049 1 84.28 ? C2' DTP 901 F 1 
HETATM 20 C C1' DTP . . . X 5 219.095 167.515 173.71 1 84.28 ? C1' DTP 901 F 1 
HETATM 21 N N9 DTP . . . X 5 219.014 166.251 173.019 1 84.28 ? N9 DTP 901 F 1 
HETATM 22 C C8 DTP . . . X 5 218.028 165.318 173.128 1 84.28 ? C8 DTP 901 F 1 
HETATM 23 N N7 DTP . . . X 5 218.246 164.261 172.383 1 84.28 ? N7 DTP 901 F 1 
HETATM 24 C C5 DTP . . . X 5 219.448 164.526 171.746 1 84.28 ? C5 DTP 901 F 1 
HETATM 25 C C6 DTP . . . X 5 220.219 163.8 170.823 1 84.28 ? C6 DTP 901 F 1 
HETATM 26 N N6 DTP . . . X 5 219.884 162.601 170.363 1 84.28 ? N6 DTP 901 F 1 
HETATM 27 N N1 DTP . . . X 5 221.37 164.363 170.393 1 84.28 ? N1 DTP 901 F 1 
HETATM 28 C C2 DTP . . . X 5 221.707 165.57 170.861 1 84.28 ? C2 DTP 901 F 1 
HETATM 29 N N3 DTP . . . X 5 221.062 166.343 171.728 1 84.28 ? N3 DTP 901 F 1 
HETATM 30 C C4 DTP . . . X 5 219.929 165.754 172.135 1 84.28 ? C4 DTP 901 F 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           396 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#