data_6J5U
#
_model_server_result.job_id            qdkPLOG4LL-Kpm_xBna4Cw 
_model_server_result.datetime_utc      '2024-10-19 14:31:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6J5U 
#
_exptl.entry_id    6J5U 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              324.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6J5U 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 253 C SER 253 1_555 E P U5P . C U5P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
covale ? covale2 B OG1 THR 254 C THR 254 1_555 D P U5P . C U5P 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? 
#
_chem_comp.formula           'C9 H13 N2 O9 P' 
_chem_comp.formula_weight    324.181 
_chem_comp.id                U5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6J5U 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 U5P C 1 501 1 U5P U5P . 
E 4 U5P C 1 502 2 U5P U5P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 U5P . . . D 4 111.601 84.784 68.666 1 92.79 ? N1 U5P 501 C 1 
HETATM 2 C C2 U5P . . . D 4 112.781 84.472 68.081 1 92.79 ? C2 U5P 501 C 1 
HETATM 3 N N3 U5P . . . D 4 113.14 85.087 66.931 1 92.79 ? N3 U5P 501 C 1 
HETATM 4 C C4 U5P . . . D 4 112.346 85.992 66.383 1 92.79 ? C4 U5P 501 C 1 
HETATM 5 C C5 U5P . . . D 4 111.167 86.308 66.969 1 92.79 ? C5 U5P 501 C 1 
HETATM 6 C C6 U5P . . . D 4 110.808 85.693 68.119 1 92.79 ? C6 U5P 501 C 1 
HETATM 7 O O2 U5P . . . D 4 113.492 83.662 68.573 1 92.79 ? O2 U5P 501 C 1 
HETATM 8 O O4 U5P . . . D 4 112.664 86.527 65.378 1 92.79 ? O4 U5P 501 C 1 
HETATM 9 C C1' U5P . . . D 4 111.229 84.146 69.878 1 92.79 ? C1' U5P 501 C 1 
HETATM 10 C C2' U5P . . . D 4 110.555 85.143 70.751 1 92.79 ? C2' U5P 501 C 1 
HETATM 11 O O2' U5P . . . D 4 111.258 85.251 72.001 1 92.79 ? O2' U5P 501 C 1 
HETATM 12 C C3' U5P . . . D 4 109.19 84.642 70.957 1 92.79 ? C3' U5P 501 C 1 
HETATM 13 C C4' U5P . . . D 4 109.297 83.179 70.75 1 92.79 ? C4' U5P 501 C 1 
HETATM 14 O O3' U5P . . . D 4 108.752 84.915 72.293 1 92.79 ? O3' U5P 501 C 1 
HETATM 15 O O4' U5P . . . D 4 110.271 83.045 69.66 1 92.79 ? O4' U5P 501 C 1 
HETATM 16 C C5' U5P . . . D 4 107.974 82.626 70.358 1 92.79 ? C5' U5P 501 C 1 
HETATM 17 O O5' U5P . . . D 4 108.139 81.308 69.919 1 92.79 ? O5' U5P 501 C 1 
HETATM 18 P P U5P . . . D 4 107.329 81.111 68.496 1 92.79 ? P U5P 501 C 1 
HETATM 19 O O2P U5P . . . D 4 108.048 81.823 67.445 1 92.79 ? O2P U5P 501 C 1 
HETATM 20 O O3P U5P . . . D 4 107.213 79.513 68.119 1 92.79 ? O3P U5P 501 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#