data_6J61 # _model_server_result.job_id lcwmRcMHuGEhsbJepdFqTw _model_server_result.datetime_utc '2024-10-19 11:45:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 6J61 # _exptl.entry_id 6J61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.12 _cell.angle_gamma 90 _cell.entry_id 6J61 _cell.length_a 144.027 _cell.length_b 68.362 _cell.length_c 134.083 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 K N N ? 2 N N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 6J61 _atom_sites.fract_transf_matrix[1][1] 0.006943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003255 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 301 FAD FAD . F 3 PO4 A 1 302 302 PO4 PO4 . G 3 PO4 A 1 303 303 PO4 PO4 . H 3 PO4 B 1 302 302 PO4 PO4 . I 3 PO4 B 1 303 303 PO4 PO4 . J 2 FAD B 1 301 301 FAD FAD . K 2 FAD C 1 301 301 FAD FAD . L 3 PO4 C 1 303 303 PO4 PO4 . M 3 PO4 C 1 302 302 PO4 PO4 . N 2 FAD D 1 301 301 FAD FAD . O 3 PO4 D 1 303 303 PO4 PO4 . P 3 PO4 D 1 302 302 PO4 PO4 . Q 4 HOH A 1 401 401 HOH HOH . Q 4 HOH A 2 402 402 HOH HOH . Q 4 HOH A 3 403 403 HOH HOH . Q 4 HOH A 4 404 404 HOH HOH . Q 4 HOH A 5 405 405 HOH HOH . Q 4 HOH A 6 406 406 HOH HOH . Q 4 HOH A 7 407 407 HOH HOH . Q 4 HOH A 8 408 408 HOH HOH . Q 4 HOH A 9 409 409 HOH HOH . Q 4 HOH A 10 410 410 HOH HOH . Q 4 HOH A 11 411 411 HOH HOH . Q 4 HOH A 12 412 412 HOH HOH . Q 4 HOH A 13 413 413 HOH HOH . Q 4 HOH A 14 414 414 HOH HOH . Q 4 HOH A 15 415 415 HOH HOH . Q 4 HOH A 16 416 416 HOH HOH . Q 4 HOH A 17 417 417 HOH HOH . Q 4 HOH A 18 418 418 HOH HOH . Q 4 HOH A 19 419 419 HOH HOH . Q 4 HOH A 20 420 420 HOH HOH . Q 4 HOH A 21 421 421 HOH HOH . R 4 HOH B 1 401 401 HOH HOH . R 4 HOH B 2 402 402 HOH HOH . R 4 HOH B 3 403 403 HOH HOH . R 4 HOH B 4 404 404 HOH HOH . R 4 HOH B 5 405 405 HOH HOH . R 4 HOH B 6 406 406 HOH HOH . R 4 HOH B 7 407 407 HOH HOH . R 4 HOH B 8 408 408 HOH HOH . R 4 HOH B 9 409 409 HOH HOH . R 4 HOH B 10 410 410 HOH HOH . R 4 HOH B 11 411 411 HOH HOH . R 4 HOH B 12 412 412 HOH HOH . S 4 HOH C 1 401 401 HOH HOH . S 4 HOH C 2 402 402 HOH HOH . S 4 HOH C 3 403 403 HOH HOH . S 4 HOH C 4 404 404 HOH HOH . S 4 HOH C 5 405 405 HOH HOH . S 4 HOH C 6 406 406 HOH HOH . S 4 HOH C 7 407 407 HOH HOH . S 4 HOH C 8 408 408 HOH HOH . S 4 HOH C 9 409 409 HOH HOH . S 4 HOH C 10 410 410 HOH HOH . S 4 HOH C 11 411 411 HOH HOH . S 4 HOH C 12 412 412 HOH HOH . S 4 HOH C 13 413 413 HOH HOH . S 4 HOH C 14 414 414 HOH HOH . S 4 HOH C 15 415 415 HOH HOH . S 4 HOH C 16 416 416 HOH HOH . S 4 HOH C 17 417 417 HOH HOH . S 4 HOH C 18 418 418 HOH HOH . S 4 HOH C 19 419 419 HOH HOH . S 4 HOH C 20 420 420 HOH HOH . S 4 HOH C 21 421 421 HOH HOH . S 4 HOH C 22 422 422 HOH HOH . T 4 HOH D 1 401 401 HOH HOH . T 4 HOH D 2 402 402 HOH HOH . T 4 HOH D 3 403 403 HOH HOH . T 4 HOH D 4 404 404 HOH HOH . T 4 HOH D 5 405 405 HOH HOH . T 4 HOH D 6 406 406 HOH HOH . T 4 HOH D 7 407 407 HOH HOH . T 4 HOH D 8 408 408 HOH HOH . T 4 HOH D 9 409 409 HOH HOH . T 4 HOH D 10 410 410 HOH HOH . T 4 HOH D 11 411 411 HOH HOH . T 4 HOH D 12 412 412 HOH HOH . T 4 HOH D 13 413 413 HOH HOH . T 4 HOH D 14 414 414 HOH HOH . T 4 HOH D 15 415 415 HOH HOH . T 4 HOH D 16 416 416 HOH HOH . T 4 HOH D 17 417 417 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . K 2 48.18 -6.901 33.629 1 59.36 ? PA FAD 301 C 1 HETATM 2 O O1A FAD . . . K 2 46.857 -6.674 34.267 1 59.69 ? O1A FAD 301 C 1 HETATM 3 O O2A FAD . . . K 2 47.947 -7.621 32.203 1 61.09 ? O2A FAD 301 C 1 HETATM 4 O O5B FAD . . . K 2 48.896 -5.48 33.417 1 60.73 ? O5B FAD 301 C 1 HETATM 5 C C5B FAD . . . K 2 50.206 -5.671 32.879 1 60.23 ? C5B FAD 301 C 1 HETATM 6 C C4B FAD . . . K 2 50.972 -4.352 33.02 1 61.03 ? C4B FAD 301 C 1 HETATM 7 O O4B FAD . . . K 2 50.38 -3.352 32.162 1 62.72 ? O4B FAD 301 C 1 HETATM 8 C C3B FAD . . . K 2 50.886 -3.799 34.444 1 61.36 ? C3B FAD 301 C 1 HETATM 9 O O3B FAD . . . K 2 51.895 -4.333 35.309 1 59.88 ? O3B FAD 301 C 1 HETATM 10 C C2B FAD . . . K 2 51.011 -2.295 34.219 1 61.71 ? C2B FAD 301 C 1 HETATM 11 O O2B FAD . . . K 2 52.389 -1.92 34.136 1 61.74 ? O2B FAD 301 C 1 HETATM 12 C C1B FAD . . . K 2 50.255 -2.078 32.89 1 63.02 ? C1B FAD 301 C 1 HETATM 13 N N9A FAD . . . K 2 48.822 -1.715 33.114 1 65.17 ? N9A FAD 301 C 1 HETATM 14 C C8A FAD . . . K 2 47.718 -2.448 32.75 1 65.96 ? C8A FAD 301 C 1 HETATM 15 N N7A FAD . . . K 2 46.62 -1.833 33.093 1 66.89 ? N7A FAD 301 C 1 HETATM 16 C C5A FAD . . . K 2 46.929 -0.663 33.699 1 68.37 ? C5A FAD 301 C 1 HETATM 17 C C6A FAD . . . K 2 46.179 0.416 34.275 1 69.14 ? C6A FAD 301 C 1 HETATM 18 N N6A FAD . . . K 2 44.794 0.388 34.286 1 70.44 ? N6A FAD 301 C 1 HETATM 19 N N1A FAD . . . K 2 46.849 1.469 34.81 1 69.06 ? N1A FAD 301 C 1 HETATM 20 C C2A FAD . . . K 2 48.187 1.519 34.811 1 68.6 ? C2A FAD 301 C 1 HETATM 21 N N3A FAD . . . K 2 48.926 0.531 34.284 1 68.47 ? N3A FAD 301 C 1 HETATM 22 C C4A FAD . . . K 2 48.351 -0.565 33.724 1 67.29 ? C4A FAD 301 C 1 HETATM 23 N N1 FAD . . . K 2 45.459 -8.586 43.736 1 70.22 ? N1 FAD 301 C 1 HETATM 24 C C2 FAD . . . K 2 44.526 -8.118 44.584 1 69.34 ? C2 FAD 301 C 1 HETATM 25 O O2 FAD . . . K 2 43.6 -7.468 44.123 1 66.77 ? O2 FAD 301 C 1 HETATM 26 N N3 FAD . . . K 2 44.565 -8.332 45.928 1 70.29 ? N3 FAD 301 C 1 HETATM 27 C C4 FAD . . . K 2 45.579 -9.057 46.525 1 69.52 ? C4 FAD 301 C 1 HETATM 28 O O4 FAD . . . K 2 45.599 -9.237 47.73 1 67.61 ? O4 FAD 301 C 1 HETATM 29 C C4X FAD . . . K 2 46.649 -9.608 45.632 1 69.52 ? C4X FAD 301 C 1 HETATM 30 N N5 FAD . . . K 2 47.676 -10.322 46.09 1 70.28 ? N5 FAD 301 C 1 HETATM 31 C C5X FAD . . . K 2 48.645 -10.809 45.26 1 71.07 ? C5X FAD 301 C 1 HETATM 32 C C6 FAD . . . K 2 49.736 -11.572 45.805 1 71.96 ? C6 FAD 301 C 1 HETATM 33 C C7 FAD . . . K 2 50.731 -12.072 44.972 1 72.6 ? C7 FAD 301 C 1 HETATM 34 C C7M FAD . . . K 2 51.86 -12.868 45.592 1 74.02 ? C7M FAD 301 C 1 HETATM 35 C C8 FAD . . . K 2 50.686 -11.837 43.552 1 73.02 ? C8 FAD 301 C 1 HETATM 36 C C8M FAD . . . K 2 51.768 -12.375 42.627 1 72.23 ? C8M FAD 301 C 1 HETATM 37 C C9 FAD . . . K 2 49.631 -11.099 42.99 1 70.99 ? C9 FAD 301 C 1 HETATM 38 C C9A FAD . . . K 2 48.587 -10.565 43.817 1 70.44 ? C9A FAD 301 C 1 HETATM 39 N N10 FAD . . . K 2 47.495 -9.802 43.276 1 68.89 ? N10 FAD 301 C 1 HETATM 40 C C10 FAD . . . K 2 46.518 -9.314 44.158 1 69.5 ? C10 FAD 301 C 1 HETATM 41 C C1' FAD . . . K 2 47.358 -9.517 41.819 1 66.42 ? C1' FAD 301 C 1 HETATM 42 C C2' FAD . . . K 2 48.397 -8.5 41.279 1 65.51 ? C2' FAD 301 C 1 HETATM 43 O O2' FAD . . . K 2 48.451 -7.336 42.101 1 64.83 ? O2' FAD 301 C 1 HETATM 44 C C3' FAD . . . K 2 48.05 -8.106 39.829 1 63.54 ? C3' FAD 301 C 1 HETATM 45 O O3' FAD . . . K 2 46.72 -7.572 39.784 1 62.92 ? O3' FAD 301 C 1 HETATM 46 C C4' FAD . . . K 2 48.155 -9.335 38.872 1 63.76 ? C4' FAD 301 C 1 HETATM 47 O O4' FAD . . . K 2 49.332 -10.114 39.149 1 61.54 ? O4' FAD 301 C 1 HETATM 48 C C5' FAD . . . K 2 48.196 -8.868 37.412 1 62.87 ? C5' FAD 301 C 1 HETATM 49 O O5' FAD . . . K 2 49.54 -8.514 37.072 1 62.64 ? O5' FAD 301 C 1 HETATM 50 P P FAD . . . K 2 49.515 -7.286 36.013 1 62.03 ? P FAD 301 C 1 HETATM 51 O O1P FAD . . . K 2 48.561 -6.227 36.473 1 60.97 ? O1P FAD 301 C 1 HETATM 52 O O2P FAD . . . K 2 51.001 -6.684 35.92 1 60.94 ? O2P FAD 301 C 1 HETATM 53 O O3P FAD . . . K 2 49.097 -7.906 34.545 1 61.16 ? O3P FAD 301 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 53 #