data_6J61 # _model_server_result.job_id 50FcYgTL7MS8pBLcUzdI2Q _model_server_result.datetime_utc '2024-10-19 11:52:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 6J61 # _exptl.entry_id 6J61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.12 _cell.angle_gamma 90 _cell.entry_id 6J61 _cell.length_a 144.027 _cell.length_b 68.362 _cell.length_c 134.083 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 K N N ? 2 N N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 6J61 _atom_sites.fract_transf_matrix[1][1] 0.006943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003255 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 301 FAD FAD . F 3 PO4 A 1 302 302 PO4 PO4 . G 3 PO4 A 1 303 303 PO4 PO4 . H 3 PO4 B 1 302 302 PO4 PO4 . I 3 PO4 B 1 303 303 PO4 PO4 . J 2 FAD B 1 301 301 FAD FAD . K 2 FAD C 1 301 301 FAD FAD . L 3 PO4 C 1 303 303 PO4 PO4 . M 3 PO4 C 1 302 302 PO4 PO4 . N 2 FAD D 1 301 301 FAD FAD . O 3 PO4 D 1 303 303 PO4 PO4 . P 3 PO4 D 1 302 302 PO4 PO4 . Q 4 HOH A 1 401 401 HOH HOH . Q 4 HOH A 2 402 402 HOH HOH . Q 4 HOH A 3 403 403 HOH HOH . Q 4 HOH A 4 404 404 HOH HOH . Q 4 HOH A 5 405 405 HOH HOH . Q 4 HOH A 6 406 406 HOH HOH . Q 4 HOH A 7 407 407 HOH HOH . Q 4 HOH A 8 408 408 HOH HOH . Q 4 HOH A 9 409 409 HOH HOH . Q 4 HOH A 10 410 410 HOH HOH . Q 4 HOH A 11 411 411 HOH HOH . Q 4 HOH A 12 412 412 HOH HOH . Q 4 HOH A 13 413 413 HOH HOH . Q 4 HOH A 14 414 414 HOH HOH . Q 4 HOH A 15 415 415 HOH HOH . Q 4 HOH A 16 416 416 HOH HOH . Q 4 HOH A 17 417 417 HOH HOH . Q 4 HOH A 18 418 418 HOH HOH . Q 4 HOH A 19 419 419 HOH HOH . Q 4 HOH A 20 420 420 HOH HOH . Q 4 HOH A 21 421 421 HOH HOH . R 4 HOH B 1 401 401 HOH HOH . R 4 HOH B 2 402 402 HOH HOH . R 4 HOH B 3 403 403 HOH HOH . R 4 HOH B 4 404 404 HOH HOH . R 4 HOH B 5 405 405 HOH HOH . R 4 HOH B 6 406 406 HOH HOH . R 4 HOH B 7 407 407 HOH HOH . R 4 HOH B 8 408 408 HOH HOH . R 4 HOH B 9 409 409 HOH HOH . R 4 HOH B 10 410 410 HOH HOH . R 4 HOH B 11 411 411 HOH HOH . R 4 HOH B 12 412 412 HOH HOH . S 4 HOH C 1 401 401 HOH HOH . S 4 HOH C 2 402 402 HOH HOH . S 4 HOH C 3 403 403 HOH HOH . S 4 HOH C 4 404 404 HOH HOH . S 4 HOH C 5 405 405 HOH HOH . S 4 HOH C 6 406 406 HOH HOH . S 4 HOH C 7 407 407 HOH HOH . S 4 HOH C 8 408 408 HOH HOH . S 4 HOH C 9 409 409 HOH HOH . S 4 HOH C 10 410 410 HOH HOH . S 4 HOH C 11 411 411 HOH HOH . S 4 HOH C 12 412 412 HOH HOH . S 4 HOH C 13 413 413 HOH HOH . S 4 HOH C 14 414 414 HOH HOH . S 4 HOH C 15 415 415 HOH HOH . S 4 HOH C 16 416 416 HOH HOH . S 4 HOH C 17 417 417 HOH HOH . S 4 HOH C 18 418 418 HOH HOH . S 4 HOH C 19 419 419 HOH HOH . S 4 HOH C 20 420 420 HOH HOH . S 4 HOH C 21 421 421 HOH HOH . S 4 HOH C 22 422 422 HOH HOH . T 4 HOH D 1 401 401 HOH HOH . T 4 HOH D 2 402 402 HOH HOH . T 4 HOH D 3 403 403 HOH HOH . T 4 HOH D 4 404 404 HOH HOH . T 4 HOH D 5 405 405 HOH HOH . T 4 HOH D 6 406 406 HOH HOH . T 4 HOH D 7 407 407 HOH HOH . T 4 HOH D 8 408 408 HOH HOH . T 4 HOH D 9 409 409 HOH HOH . T 4 HOH D 10 410 410 HOH HOH . T 4 HOH D 11 411 411 HOH HOH . T 4 HOH D 12 412 412 HOH HOH . T 4 HOH D 13 413 413 HOH HOH . T 4 HOH D 14 414 414 HOH HOH . T 4 HOH D 15 415 415 HOH HOH . T 4 HOH D 16 416 416 HOH HOH . T 4 HOH D 17 417 417 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . N 2 43.86 5.906 22.892 1 68.91 ? PA FAD 301 D 1 HETATM 2 O O1A FAD . . . N 2 45.217 6.398 23.234 1 67.75 ? O1A FAD 301 D 1 HETATM 3 O O2A FAD . . . N 2 43.981 4.7 21.821 1 67.78 ? O2A FAD 301 D 1 HETATM 4 O O5B FAD . . . N 2 43.164 5.363 24.232 1 67.08 ? O5B FAD 301 D 1 HETATM 5 C C5B FAD . . . N 2 41.792 5.056 23.972 1 64.08 ? C5B FAD 301 D 1 HETATM 6 C C4B FAD . . . N 2 41.095 4.949 25.323 1 63.46 ? C4B FAD 301 D 1 HETATM 7 O O4B FAD . . . N 2 41.704 3.883 26.085 1 64.98 ? O4B FAD 301 D 1 HETATM 8 C C3B FAD . . . N 2 41.285 6.219 26.135 1 62.68 ? C3B FAD 301 D 1 HETATM 9 O O3B FAD . . . N 2 40.292 7.212 25.877 1 61.09 ? O3B FAD 301 D 1 HETATM 10 C C2B FAD . . . N 2 41.271 5.724 27.574 1 62.93 ? C2B FAD 301 D 1 HETATM 11 O O2B FAD . . . N 2 39.927 5.685 28.07 1 64.13 ? O2B FAD 301 D 1 HETATM 12 C C1B FAD . . . N 2 41.922 4.318 27.476 1 64.38 ? C1B FAD 301 D 1 HETATM 13 N N9A FAD . . . N 2 43.38 4.31 27.809 1 65.76 ? N9A FAD 301 D 1 HETATM 14 C C8A FAD . . . N 2 44.392 3.824 27.015 1 66.32 ? C8A FAD 301 D 1 HETATM 15 N N7A FAD . . . N 2 45.55 3.961 27.601 1 66.46 ? N7A FAD 301 D 1 HETATM 16 C C5A FAD . . . N 2 45.378 4.538 28.808 1 66.28 ? C5A FAD 301 D 1 HETATM 17 C C6A FAD . . . N 2 46.245 4.929 29.873 1 66.3 ? C6A FAD 301 D 1 HETATM 18 N N6A FAD . . . N 2 47.609 4.727 29.777 1 66.07 ? N6A FAD 301 D 1 HETATM 19 N N1A FAD . . . N 2 45.71 5.499 30.977 1 65.6 ? N1A FAD 301 D 1 HETATM 20 C C2A FAD . . . N 2 44.388 5.704 31.088 1 66.21 ? C2A FAD 301 D 1 HETATM 21 N N3A FAD . . . N 2 43.535 5.354 30.112 1 65.71 ? N3A FAD 301 D 1 HETATM 22 C C4A FAD . . . N 2 43.978 4.777 28.97 1 66.07 ? C4A FAD 301 D 1 HETATM 23 N N1 FAD . . . N 2 47.035 16.12 22.827 1 91.6 ? N1 FAD 301 D 1 HETATM 24 C C2 FAD . . . N 2 47.99 16.899 23.361 1 90.7 ? C2 FAD 301 D 1 HETATM 25 O O2 FAD . . . N 2 48.924 16.361 23.93 1 88.13 ? O2 FAD 301 D 1 HETATM 26 N N3 FAD . . . N 2 47.964 18.253 23.3 1 92.28 ? N3 FAD 301 D 1 HETATM 27 C C4 FAD . . . N 2 46.939 18.938 22.676 1 92.83 ? C4 FAD 301 D 1 HETATM 28 O O4 FAD . . . N 2 46.931 20.159 22.632 1 93.48 ? O4 FAD 301 D 1 HETATM 29 C C4X FAD . . . N 2 45.837 18.126 22.062 1 92.32 ? C4X FAD 301 D 1 HETATM 30 N N5 FAD . . . N 2 44.792 18.67 21.439 1 92.73 ? N5 FAD 301 D 1 HETATM 31 C C5X FAD . . . N 2 43.8 17.911 20.891 1 93.15 ? C5X FAD 301 D 1 HETATM 32 C C6 FAD . . . N 2 42.689 18.548 20.235 1 93.54 ? C6 FAD 301 D 1 HETATM 33 C C7 FAD . . . N 2 41.668 17.785 19.674 1 93.77 ? C7 FAD 301 D 1 HETATM 34 C C7M FAD . . . N 2 40.516 18.501 18.993 1 93.87 ? C7M FAD 301 D 1 HETATM 35 C C8 FAD . . . N 2 41.71 16.349 19.74 1 93.23 ? C8 FAD 301 D 1 HETATM 36 C C8M FAD . . . N 2 40.608 15.505 19.136 1 92.64 ? C8M FAD 301 D 1 HETATM 37 C C9 FAD . . . N 2 42.783 15.698 20.374 1 92.76 ? C9 FAD 301 D 1 HETATM 38 C C9A FAD . . . N 2 43.851 16.455 20.965 1 92.52 ? C9A FAD 301 D 1 HETATM 39 N N10 FAD . . . N 2 44.96 15.826 21.625 1 91.44 ? N10 FAD 301 D 1 HETATM 40 C C10 FAD . . . N 2 45.96 16.633 22.181 1 91.9 ? C10 FAD 301 D 1 HETATM 41 C C1' FAD . . . N 2 45.086 14.35 21.737 1 88.61 ? C1' FAD 301 D 1 HETATM 42 C C2' FAD . . . N 2 44.193 13.727 22.841 1 86.15 ? C2' FAD 301 D 1 HETATM 43 O O2' FAD . . . N 2 44.438 14.346 24.107 1 85.57 ? O2' FAD 301 D 1 HETATM 44 C C3' FAD . . . N 2 44.461 12.204 22.937 1 84.57 ? C3' FAD 301 D 1 HETATM 45 O O3' FAD . . . N 2 45.803 11.972 23.402 1 83.8 ? O3' FAD 301 D 1 HETATM 46 C C4' FAD . . . N 2 44.258 11.506 21.554 1 82.81 ? C4' FAD 301 D 1 HETATM 47 O O4' FAD . . . N 2 43.09 12.025 20.889 1 83.31 ? O4' FAD 301 D 1 HETATM 48 C C5' FAD . . . N 2 44.094 9.999 21.742 1 79.85 ? C5' FAD 301 D 1 HETATM 49 O O5' FAD . . . N 2 42.77 9.754 22.213 1 76.43 ? O5' FAD 301 D 1 HETATM 50 P P FAD . . . N 2 42.768 8.444 23.152 1 74.2 ? P FAD 301 D 1 HETATM 51 O O1P FAD . . . N 2 43.827 8.552 24.197 1 74.06 ? O1P FAD 301 D 1 HETATM 52 O O2P FAD . . . N 2 41.323 8.352 23.834 1 74.21 ? O2P FAD 301 D 1 HETATM 53 O O3P FAD . . . N 2 42.992 7.116 22.186 1 72.34 ? O3P FAD 301 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #