data_6J63
#
_model_server_result.job_id            aSeMF9hjppQqqcpc012Kyw 
_model_server_result.datetime_utc      '2024-10-18 16:26:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":502}' 
#
_entry.id    6J63 
#
_exptl.entry_id    6J63 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.228 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.15 
_cell.angle_gamma         90 
_cell.entry_id            6J63 
_cell.length_a            95.66 
_cell.length_b            95.96 
_cell.length_c            97.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 401 A CYS 401 1_555 A SG CYS 416 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 401 B CYS 401 1_555 B SG CYS 416 B CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 401 C CYS 401 1_555 C SG CYS 416 C CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 401 D CYS 401 1_555 D SG CYS 416 D CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A NE2 HIS 226 A HIS 226 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc2 A NE2 HIS 308 A HIS 308 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 A OE1 GLU 394 A GLU 394 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc4 E FE FE . A FE 501 1_555 F O1 NTD . A NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc5 E FE FE . A FE 501 1_555 F O7 NTD . A NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc6 B NE2 HIS 226 B HIS 226 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc7 B NE2 HIS 308 B HIS 308 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc8 B OE1 GLU 394 B GLU 394 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc9 G FE FE . B FE 501 1_555 H O1 NTD . B NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc10 G FE FE . B FE 501 1_555 H O7 NTD . B NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc11 C NE2 HIS 226 C HIS 226 1_555 I FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc12 C NE2 HIS 308 C HIS 308 1_555 I FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc13 C OE1 GLU 394 C GLU 394 1_555 I FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc14 I FE FE . C FE 501 1_555 J O7 NTD . C NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc15 I FE FE . C FE 501 1_555 J O1 NTD . C NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc16 D NE2 HIS 226 D HIS 226 1_555 K FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc17 D NE2 HIS 308 D HIS 308 1_555 K FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc18 D OE2 GLU 394 D GLU 394 1_555 K FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc19 K FE FE . D FE 501 1_555 L O1 NTD . D NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc20 K FE FE . D FE 501 1_555 L O7 NTD . D NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
#
_chem_comp.formula           'C14 H10 F3 N O5' 
_chem_comp.formula_weight    329.228 
_chem_comp.id                NTD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C5 NTD doub 237 n n 
C5 C2 NTD sing 238 n n 
C5 C6 NTD sing 239 n n 
C2 C3 NTD sing 240 n n 
C2 H21 NTD sing 241 n n 
C2 H22 NTD sing 242 n n 
C3 C4 NTD sing 243 n n 
C3 H31 NTD sing 244 n n 
C3 H32 NTD sing 245 n n 
C4 C1 NTD sing 246 n n 
C4 H41 NTD sing 247 n n 
C4 H42 NTD sing 248 n n 
C1 O5 NTD doub 249 n n 
C1 C6 NTD sing 250 n n 
C6 C7 NTD doub 251 n n 
C7 O7 NTD sing 252 n n 
C7 C8 NTD sing 253 n n 
O7 HO7 NTD sing 254 n n 
C8 C13 NTD doub 255 n y 
C8 C9 NTD sing 256 n y 
C13 C12 NTD sing 257 n y 
C13 H13 NTD sing 258 n n 
C12 C11 NTD doub 259 n y 
C12 H12 NTD sing 260 n n 
C11 C14 NTD sing 261 n n 
C11 C10 NTD sing 262 n y 
C14 F2 NTD sing 263 n n 
C14 F3 NTD sing 264 n n 
C14 F1 NTD sing 265 n n 
C10 C9 NTD doub 266 n y 
C10 H10 NTD sing 267 n n 
C9 N NTD sing 268 n n 
N ON2 NTD doub 269 n n 
N ON1 NTD sing 270 n n 
#
_atom_sites.entry_id                     6J63 
_atom_sites.fract_transf_matrix[1][1]    0.010454 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000392 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010421 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FE A 1 501 501 FE FE . 
F 3 NTD A 1 502 502 NTD NTD . 
G 2 FE B 1 501 501 FE FE . 
H 3 NTD B 1 502 502 NTD NTD . 
I 2 FE C 1 501 501 FE FE . 
J 3 NTD C 1 502 502 NTD NTD . 
K 2 FE D 1 501 501 FE FE . 
L 3 NTD D 1 502 502 NTD NTD . 
M 4 HOH A 1 601 602 HOH HOH . 
M 4 HOH A 2 602 601 HOH HOH . 
M 4 HOH A 3 603 603 HOH HOH . 
M 4 HOH A 4 604 604 HOH HOH . 
N 4 HOH B 1 601 602 HOH HOH . 
N 4 HOH B 2 602 603 HOH HOH . 
N 4 HOH B 3 603 601 HOH HOH . 
N 4 HOH B 4 604 604 HOH HOH . 
N 4 HOH B 5 605 605 HOH HOH . 
O 4 HOH C 1 601 601 HOH HOH . 
O 4 HOH C 2 602 604 HOH HOH . 
O 4 HOH C 3 603 603 HOH HOH . 
O 4 HOH C 4 604 602 HOH HOH . 
O 4 HOH C 5 605 605 HOH HOH . 
P 4 HOH D 1 601 601 HOH HOH . 
P 4 HOH D 2 602 602 HOH HOH . 
P 4 HOH D 3 603 603 HOH HOH . 
P 4 HOH D 4 604 604 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 NTD . . . L 3 -2.695 10.735 44.61 1 34.6 ? O1 NTD 502 D 1 
HETATM 2 C C5 NTD . . . L 3 -3.138 9.824 45.222 1 30.68 ? C5 NTD 502 D 1 
HETATM 3 C C2 NTD . . . L 3 -3.285 9.943 46.733 1 30.3 ? C2 NTD 502 D 1 
HETATM 4 C C3 NTD . . . L 3 -3.38 8.621 47.421 1 28.08 ? C3 NTD 502 D 1 
HETATM 5 C C4 NTD . . . L 3 -4.46 7.724 46.914 1 26.66 ? C4 NTD 502 D 1 
HETATM 6 C C1 NTD . . . L 3 -4.562 7.69 45.394 1 26.36 ? C1 NTD 502 D 1 
HETATM 7 O O5 NTD . . . L 3 -5.412 7.032 44.901 1 25.41 ? O5 NTD 502 D 1 
HETATM 8 C C6 NTD . . . L 3 -3.567 8.504 44.521 1 26.64 ? C6 NTD 502 D 1 
HETATM 9 C C7 NTD . . . L 3 -2.797 7.926 43.608 1 24.9 ? C7 NTD 502 D 1 
HETATM 10 O O7 NTD . . . L 3 -1.518 8.419 43.364 1 21.4 ? O7 NTD 502 D 1 
HETATM 11 C C8 NTD . . . L 3 -3.283 6.621 42.979 1 24.23 ? C8 NTD 502 D 1 
HETATM 12 C C13 NTD . . . L 3 -4.088 6.678 41.848 1 22.01 ? C13 NTD 502 D 1 
HETATM 13 C C12 NTD . . . L 3 -4.557 5.511 41.262 1 21.78 ? C12 NTD 502 D 1 
HETATM 14 C C11 NTD . . . L 3 -4.212 4.288 41.807 1 21.3 ? C11 NTD 502 D 1 
HETATM 15 C C14 NTD . . . L 3 -4.705 2.998 41.163 1 20.07 ? C14 NTD 502 D 1 
HETATM 16 F F2 NTD . . . L 3 -4.623 1.99 42.079 1 18.67 ? F2 NTD 502 D 1 
HETATM 17 F F3 NTD . . . L 3 -5.993 3.158 40.74 1 21.01 ? F3 NTD 502 D 1 
HETATM 18 F F1 NTD . . . L 3 -3.91 2.691 40.101 1 17.77 ? F1 NTD 502 D 1 
HETATM 19 C C10 NTD . . . L 3 -3.408 4.227 42.931 1 24.7 ? C10 NTD 502 D 1 
HETATM 20 C C9 NTD . . . L 3 -2.942 5.387 43.523 1 27.36 ? C9 NTD 502 D 1 
HETATM 21 N N NTD . . . L 3 -2.096 5.288 44.711 1 31.75 ? N NTD 502 D 1 
HETATM 22 O ON2 NTD . . . L 3 -1.309 4.413 44.788 1 33.02 ? ON2 NTD 502 D 1 
HETATM 23 O ON1 NTD . . . L 3 -2.21 6.204 45.761 1 34.76 -1 ON1 NTD 502 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#