data_6J71 # _model_server_result.job_id Qz3fRNGglgxJhZW4yKqmXg _model_server_result.datetime_utc '2025-01-22 04:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 6J71 # _exptl.entry_id 6J71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.47 _cell.angle_gamma 90 _cell.entry_id 6J71 _cell.length_a 146.987 _cell.length_b 78.073 _cell.length_c 125.769 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BMA _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1002 NAG 3 n C BMA 2 C 2 BMA A 1003 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 26 1_555 A SG CYS 32 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 141 A CYS 162 1_555 A SG CYS 171 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf3 A SG CYS 174 A CYS 195 1_555 A SG CYS 183 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf4 A SG CYS 178 A CYS 199 1_555 A SG CYS 191 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf5 A SG CYS 199 A CYS 220 1_555 A SG CYS 206 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf6 A SG CYS 203 A CYS 224 1_555 A SG CYS 214 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 215 A CYS 236 1_555 A SG CYS 223 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf8 A SG CYS 219 A CYS 240 1_555 A SG CYS 231 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf9 A SG CYS 234 A CYS 255 1_555 A SG CYS 243 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 A SG CYS 247 A CYS 268 1_555 A SG CYS 274 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 278 A CYS 299 1_555 A SG CYS 290 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf12 A SG CYS 294 A CYS 315 1_555 A SG CYS 310 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 A SG CYS 313 A CYS 334 1_555 A SG CYS 317 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf14 A SG CYS 321 A CYS 342 1_555 A SG CYS 346 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf15 A SG CYS 454 A CYS 475 1_555 A SG CYS 483 A CYS 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 A SG CYS 490 A CYS 511 1_555 A SG CYS 499 A CYS 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf17 A SG CYS 494 A CYS 515 1_555 A SG CYS 507 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf18 A SG CYS 510 A CYS 531 1_555 A SG CYS 519 A CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 A SG CYS 523 A CYS 544 1_555 A SG CYS 539 A CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 A SG CYS 542 A CYS 563 1_555 A SG CYS 555 A CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf21 A SG CYS 546 A CYS 567 1_555 A SG CYS 563 A CYS 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf22 A SG CYS 566 A CYS 587 1_555 A SG CYS 575 A CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf23 A SG CYS 579 A CYS 600 1_555 A SG CYS 602 A CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf24 A SG CYS 605 A CYS 626 1_555 A SG CYS 613 A CYS 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf25 B SG CYS 24 B CYS 28 1_555 B SG CYS 95 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf26 B SG CYS 157 B CYS 161 1_555 B SG CYS 231 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A ND2 ASN 166 A ASN 187 1_555 D C1 BMA . A BMA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale2 A ND2 ASN 238 A ASN 259 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 BMA . C BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BMA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-mannopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMA sing 70 n n C1 O1 BMA sing 71 n n C1 O5 BMA sing 72 n n C1 H1 BMA sing 73 n n C2 C3 BMA sing 74 n n C2 O2 BMA sing 75 n n C2 H2 BMA sing 76 n n C3 C4 BMA sing 77 n n C3 O3 BMA sing 78 n n C3 H3 BMA sing 79 n n C4 C5 BMA sing 80 n n C4 O4 BMA sing 81 n n C4 H4 BMA sing 82 n n C5 C6 BMA sing 83 n n C5 O5 BMA sing 84 n n C5 H5 BMA sing 85 n n C6 O6 BMA sing 86 n n C6 H61 BMA sing 87 n n C6 H62 BMA sing 88 n n O1 HO1 BMA sing 89 n n O2 HO2 BMA sing 90 n n O3 HO3 BMA sing 91 n n O4 HO4 BMA sing 92 n n O6 HO6 BMA sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BMA b-D-mannopyranose 'COMMON NAME' GMML 1 BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6J71 _atom_sites.fract_transf_matrix[1][1] 0.006803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002142 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id BMA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1001 _pdbx_nonpoly_scheme.auth_seq_num 1001 _pdbx_nonpoly_scheme.pdb_mon_id BMA _pdbx_nonpoly_scheme.auth_mon_id BMA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMA . . . D 4 608.379 137.565 394.506 0.88 81.19 ? C1 BMA 1001 A 1 HETATM 2 C C2 BMA . . . D 4 609.096 136.224 394.614 0.88 79.08 ? C2 BMA 1001 A 1 HETATM 3 C C3 BMA . . . D 4 608.118 135.107 394.959 0.88 81.22 ? C3 BMA 1001 A 1 HETATM 4 C C4 BMA . . . D 4 607.24 135.496 396.143 0.88 86.72 ? C4 BMA 1001 A 1 HETATM 5 C C5 BMA . . . D 4 606.634 136.88 395.942 0.88 88.78 ? C5 BMA 1001 A 1 HETATM 6 C C6 BMA . . . D 4 605.818 137.3 397.159 0.88 69.29 ? C6 BMA 1001 A 1 HETATM 7 O O2 BMA . . . D 4 610.106 136.303 395.627 0.88 75.24 ? O2 BMA 1001 A 1 HETATM 8 O O3 BMA . . . D 4 608.846 133.916 395.276 0.88 86.97 ? O3 BMA 1001 A 1 HETATM 9 O O4 BMA . . . D 4 606.191 134.533 396.296 0.88 78.85 ? O4 BMA 1001 A 1 HETATM 10 O O5 BMA . . . D 4 607.676 137.827 395.719 0.88 93.71 ? O5 BMA 1001 A 1 HETATM 11 O O6 BMA . . . D 4 606.476 138.384 397.824 0.88 49.38 ? O6 BMA 1001 A 1 # _model_server_stats.io_time_ms 134 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #