data_6J79
#
_model_server_result.job_id            3o6t4CTG3fYkRYGPXx-Wxg 
_model_server_result.datetime_utc      '2024-11-16 09:56:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    6J79 
#
_exptl.entry_id    6J79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6J79 
_cell.length_a            83.36 
_cell.length_b            159.78 
_cell.length_c            189.59 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 45 A HIS 25 1_555 E FE HEM . A HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc2 E FE HEM . A HEM 903 1_555 I O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc3 B NE2 HIS 45 B HIS 25 1_555 H FE HEM . B HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc4 H FE HEM . B HEM 903 1_555 J O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6J79 
_atom_sites.fract_transf_matrix[1][1]    0.011996 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 901 852 FAD FAD . 
D 3 FMN A 1 902 853 FMN FMN . 
E 4 HEM A 1 903 854 HEM HEM . 
F 2 FAD B 1 901 852 FAD FAD . 
G 3 FMN B 1 902 853 FMN FMN . 
H 4 HEM B 1 903 854 HEM HEM . 
I 5 HOH A 1 1001 1 HOH HOH . 
I 5 HOH A 2 1002 9 HOH HOH . 
I 5 HOH A 3 1003 11 HOH HOH . 
I 5 HOH A 4 1004 6 HOH HOH . 
I 5 HOH A 5 1005 12 HOH HOH . 
I 5 HOH A 6 1006 5 HOH HOH . 
J 5 HOH B 1 1001 2 HOH HOH . 
J 5 HOH B 2 1002 15 HOH HOH . 
J 5 HOH B 3 1003 14 HOH HOH . 
J 5 HOH B 4 1004 8 HOH HOH . 
J 5 HOH B 5 1005 4 HOH HOH . 
J 5 HOH B 6 1006 16 HOH HOH . 
J 5 HOH B 7 1007 13 HOH HOH . 
J 5 HOH B 8 1008 10 HOH HOH . 
J 5 HOH B 9 1009 7 HOH HOH . 
J 5 HOH B 10 1010 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 46.935 -4.443 -30.341 1 111.11 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . C 2 48.156 -3.733 -29.804 1 104.82 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . C 2 45.892 -3.418 -30.736 1 127.7 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . C 2 47.351 -5.349 -31.67 1 122.86 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . C 2 46.326 -6.061 -32.33 1 128.73 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . C 2 46.846 -6.557 -33.71 1 135.77 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . C 2 47.731 -7.5 -33.55 1 143.85 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . C 2 45.712 -7.241 -34.49 1 138.13 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . C 2 45.026 -6.329 -35.222 1 136.34 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . C 2 46.452 -8.228 -35.415 1 144.25 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . C 2 46.664 -7.603 -36.757 1 145.29 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . C 2 47.607 -8.462 -34.848 1 146.01 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . C 2 47.694 -9.85 -34.457 1 141.8 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . C 2 47.076 -10.423 -33.421 1 138.31 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . C 2 47.416 -11.719 -33.406 1 139.61 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . C 2 48.246 -11.943 -34.436 1 142.21 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . C 2 48.888 -13.08 -34.883 1 146.73 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . C 2 49.012 -14.484 -34.54 1 148.63 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . C 2 49.67 -13.028 -35.951 1 146.7 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . C 2 49.843 -11.857 -36.608 1 138.62 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . C 2 49.214 -10.74 -36.173 1 133.32 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . C 2 48.418 -10.789 -35.086 1 140.13 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . C 2 38.792 -8.02 -26.654 1 105.98 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . C 2 38.752 -8.99 -25.538 1 123.09 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . C 2 39.71 -9.643 -25.298 1 129.25 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . C 2 37.507 -9.135 -24.727 1 122.07 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . C 2 36.338 -8.32 -25.04 1 107.02 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . C 2 35.343 -8.425 -24.403 1 95.25 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . C 2 36.402 -7.333 -26.188 1 99.69 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . C 2 35.243 -6.517 -26.511 1 106.31 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . C 2 35.311 -5.547 -27.643 1 103.37 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . C 2 34.197 -4.759 -27.956 1 98.52 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . C 2 34.264 -3.853 -29.015 1 100.73 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . C 2 32.925 -3.122 -29.145 1 98.21 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . C 2 35.444 -3.73 -29.766 1 102.46 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . C 2 35.467 -2.723 -30.916 1 101.91 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . C 2 36.557 -4.513 -29.456 1 103.03 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . C 2 36.493 -5.422 -28.398 1 102.85 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . C 2 37.685 -6.261 -28.068 1 92.37 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . C 2 37.621 -7.203 -26.968 1 87.97 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . C 2 38.922 -6.13 -28.849 1 94.08 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . C 2 39.871 -5.194 -28.076 1 101 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . C 2 39.387 -3.895 -28.158 1 113.23 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . C 2 41.288 -5.243 -28.659 1 101.79 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . C 2 41.224 -5.202 -30.052 1 94.09 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . C 2 42.001 -6.524 -28.202 1 107.67 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . C 2 41.783 -6.731 -26.841 1 95.76 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . C 2 43.507 -6.384 -28.453 1 110.16 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . C 2 43.983 -5.218 -27.81 1 115.41 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . C 2 45.619 -4.925 -27.78 1 108.15 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . C 2 45.854 -3.438 -27.644 1 124.53 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . C 2 46.247 -5.637 -26.608 1 115.04 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . C 2 46.322 -5.459 -29.182 1 98.55 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           53 
#