data_6J79
#
_model_server_result.job_id            Qpa9DWmgNcmJGeAoJ9fZMg 
_model_server_result.datetime_utc      '2024-11-16 09:58:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":902}' 
#
_entry.id    6J79 
#
_exptl.entry_id    6J79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6J79 
_cell.length_a            83.36 
_cell.length_b            159.78 
_cell.length_c            189.59 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 45 A HIS 25 1_555 E FE HEM . A HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc2 E FE HEM . A HEM 903 1_555 I O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc3 B NE2 HIS 45 B HIS 25 1_555 H FE HEM . B HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc4 H FE HEM . B HEM 903 1_555 J O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 174 n n 
N1 C10 FMN doub 175 n n 
C2 O2 FMN doub 176 n n 
C2 N3 FMN sing 177 n n 
N3 C4 FMN sing 178 n n 
N3 HN3 FMN sing 179 n n 
C4 O4 FMN doub 180 n n 
C4 C4A FMN sing 181 n n 
C4A N5 FMN doub 182 n n 
C4A C10 FMN sing 183 n n 
N5 C5A FMN sing 184 n n 
C5A C6 FMN doub 185 n y 
C5A C9A FMN sing 186 n y 
C6 C7 FMN sing 187 n y 
C6 H6 FMN sing 188 n n 
C7 C7M FMN sing 189 n n 
C7 C8 FMN doub 190 n y 
C7M HM71 FMN sing 191 n n 
C7M HM72 FMN sing 192 n n 
C7M HM73 FMN sing 193 n n 
C8 C8M FMN sing 194 n n 
C8 C9 FMN sing 195 n y 
C8M HM81 FMN sing 196 n n 
C8M HM82 FMN sing 197 n n 
C8M HM83 FMN sing 198 n n 
C9 C9A FMN doub 199 n y 
C9 H9 FMN sing 200 n n 
C9A N10 FMN sing 201 n n 
N10 C10 FMN sing 202 n n 
N10 C1' FMN sing 203 n n 
C1' C2' FMN sing 204 n n 
C1' "H1'1" FMN sing 205 n n 
C1' "H1'2" FMN sing 206 n n 
C2' O2' FMN sing 207 n n 
C2' C3' FMN sing 208 n n 
C2' H2' FMN sing 209 n n 
O2' HO2' FMN sing 210 n n 
C3' O3' FMN sing 211 n n 
C3' C4' FMN sing 212 n n 
C3' H3' FMN sing 213 n n 
O3' HO3' FMN sing 214 n n 
C4' O4' FMN sing 215 n n 
C4' C5' FMN sing 216 n n 
C4' H4' FMN sing 217 n n 
O4' HO4' FMN sing 218 n n 
C5' O5' FMN sing 219 n n 
C5' "H5'1" FMN sing 220 n n 
C5' "H5'2" FMN sing 221 n n 
O5' P FMN sing 222 n n 
P O1P FMN doub 223 n n 
P O2P FMN sing 224 n n 
P O3P FMN sing 225 n n 
O2P HOP2 FMN sing 226 n n 
O3P HOP3 FMN sing 227 n n 
#
_atom_sites.entry_id                     6J79 
_atom_sites.fract_transf_matrix[1][1]    0.011996 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 901 852 FAD FAD . 
D 3 FMN A 1 902 853 FMN FMN . 
E 4 HEM A 1 903 854 HEM HEM . 
F 2 FAD B 1 901 852 FAD FAD . 
G 3 FMN B 1 902 853 FMN FMN . 
H 4 HEM B 1 903 854 HEM HEM . 
I 5 HOH A 1 1001 1 HOH HOH . 
I 5 HOH A 2 1002 9 HOH HOH . 
I 5 HOH A 3 1003 11 HOH HOH . 
I 5 HOH A 4 1004 6 HOH HOH . 
I 5 HOH A 5 1005 12 HOH HOH . 
I 5 HOH A 6 1006 5 HOH HOH . 
J 5 HOH B 1 1001 2 HOH HOH . 
J 5 HOH B 2 1002 15 HOH HOH . 
J 5 HOH B 3 1003 14 HOH HOH . 
J 5 HOH B 4 1004 8 HOH HOH . 
J 5 HOH B 5 1005 4 HOH HOH . 
J 5 HOH B 6 1006 16 HOH HOH . 
J 5 HOH B 7 1007 13 HOH HOH . 
J 5 HOH B 8 1008 10 HOH HOH . 
J 5 HOH B 9 1009 7 HOH HOH . 
J 5 HOH B 10 1010 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 3 26.978 6.166 -50.696 1 107.88 ? N1 FMN 902 A 1 
HETATM 2 C C2 FMN . . . D 3 27.319 5.101 -51.47 1 110.91 ? C2 FMN 902 A 1 
HETATM 3 O O2 FMN . . . D 3 28.373 4.579 -51.338 1 113.21 ? O2 FMN 902 A 1 
HETATM 4 N N3 FMN . . . D 3 26.454 4.626 -52.409 1 122.12 ? N3 FMN 902 A 1 
HETATM 5 C C4 FMN . . . D 3 25.27 5.202 -52.569 1 129.09 ? C4 FMN 902 A 1 
HETATM 6 O O4 FMN . . . D 3 24.518 4.786 -53.385 1 133.12 ? O4 FMN 902 A 1 
HETATM 7 C C4A FMN . . . D 3 24.918 6.279 -51.788 1 121.78 ? C4A FMN 902 A 1 
HETATM 8 N N5 FMN . . . D 3 23.708 6.862 -51.959 1 112.67 ? N5 FMN 902 A 1 
HETATM 9 C C5A FMN . . . D 3 23.357 7.912 -51.203 1 120.71 ? C5A FMN 902 A 1 
HETATM 10 C C6 FMN . . . D 3 22.093 8.511 -51.387 1 126.39 ? C6 FMN 902 A 1 
HETATM 11 C C7 FMN . . . D 3 21.718 9.598 -50.611 1 124 ? C7 FMN 902 A 1 
HETATM 12 C C7M FMN . . . D 3 20.326 10.144 -50.92 1 118.88 ? C7M FMN 902 A 1 
HETATM 13 C C8 FMN . . . D 3 22.589 10.097 -49.65 1 122.84 ? C8 FMN 902 A 1 
HETATM 14 C C8M FMN . . . D 3 22.204 11.291 -48.78 1 119.21 ? C8M FMN 902 A 1 
HETATM 15 C C9 FMN . . . D 3 23.831 9.506 -49.468 1 126.76 ? C9 FMN 902 A 1 
HETATM 16 C C9A FMN . . . D 3 24.221 8.399 -50.256 1 126.73 ? C9A FMN 902 A 1 
HETATM 17 N N10 FMN . . . D 3 25.428 7.825 -50.087 1 126.55 ? N10 FMN 902 A 1 
HETATM 18 C C10 FMN . . . D 3 25.779 6.756 -50.853 1 120.05 ? C10 FMN 902 A 1 
HETATM 19 C C1' FMN . . . D 3 26.453 8.222 -49.125 1 122.66 ? C1' FMN 902 A 1 
HETATM 20 C C2' FMN . . . D 3 27.209 9.475 -49.582 1 112.48 ? C2' FMN 902 A 1 
HETATM 21 O O2' FMN . . . D 3 27.976 9.189 -50.718 1 115.66 ? O2' FMN 902 A 1 
HETATM 22 C C3' FMN . . . D 3 28.121 9.96 -48.453 1 106.9 ? C3' FMN 902 A 1 
HETATM 23 O O3' FMN . . . D 3 27.34 10.503 -47.425 1 100.83 ? O3' FMN 902 A 1 
HETATM 24 C C4' FMN . . . D 3 29.117 11.005 -48.966 1 103.42 ? C4' FMN 902 A 1 
HETATM 25 O O4' FMN . . . D 3 30.087 11.255 -47.988 1 86.48 ? O4' FMN 902 A 1 
HETATM 26 C C5' FMN . . . D 3 28.418 12.322 -49.305 1 114.75 ? C5' FMN 902 A 1 
HETATM 27 O O5' FMN . . . D 3 29.371 13.202 -49.838 1 124.43 ? O5' FMN 902 A 1 
HETATM 28 P P FMN . . . D 3 29.08 14.827 -49.848 1 117.66 ? P FMN 902 A 1 
HETATM 29 O O1P FMN . . . D 3 30.357 15.57 -50.161 1 112.04 ? O1P FMN 902 A 1 
HETATM 30 O O2P FMN . . . D 3 28.579 15.253 -48.489 1 113.06 ? O2P FMN 902 A 1 
HETATM 31 O O3P FMN . . . D 3 28.046 15.156 -50.898 1 101.5 ? O3P FMN 902 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#