data_6J79 # _model_server_result.job_id -Ccmpi1BlblNMFhi-6ia9g _model_server_result.datetime_utc '2024-11-16 09:41:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":902}' # _entry.id 6J79 # _exptl.entry_id 6J79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J79 _cell.length_a 83.36 _cell.length_b 159.78 _cell.length_c 189.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 45 A HIS 25 1_555 E FE HEM . A HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc2 E FE HEM . A HEM 903 1_555 I O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc3 B NE2 HIS 45 B HIS 25 1_555 H FE HEM . B HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc4 H FE HEM . B HEM 903 1_555 J O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 6J79 _atom_sites.fract_transf_matrix[1][1] 0.011996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 901 852 FAD FAD . D 3 FMN A 1 902 853 FMN FMN . E 4 HEM A 1 903 854 HEM HEM . F 2 FAD B 1 901 852 FAD FAD . G 3 FMN B 1 902 853 FMN FMN . H 4 HEM B 1 903 854 HEM HEM . I 5 HOH A 1 1001 1 HOH HOH . I 5 HOH A 2 1002 9 HOH HOH . I 5 HOH A 3 1003 11 HOH HOH . I 5 HOH A 4 1004 6 HOH HOH . I 5 HOH A 5 1005 12 HOH HOH . I 5 HOH A 6 1006 5 HOH HOH . J 5 HOH B 1 1001 2 HOH HOH . J 5 HOH B 2 1002 15 HOH HOH . J 5 HOH B 3 1003 14 HOH HOH . J 5 HOH B 4 1004 8 HOH HOH . J 5 HOH B 5 1005 4 HOH HOH . J 5 HOH B 6 1006 16 HOH HOH . J 5 HOH B 7 1007 13 HOH HOH . J 5 HOH B 8 1008 10 HOH HOH . J 5 HOH B 9 1009 7 HOH HOH . J 5 HOH B 10 1010 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 3 25.348 -20.065 -56.354 1 111.26 ? N1 FMN 902 B 1 HETATM 2 C C2 FMN . . . G 3 26.009 -19.034 -55.762 1 105.39 ? C2 FMN 902 B 1 HETATM 3 O O2 FMN . . . G 3 26.918 -18.509 -56.31 1 104.58 ? O2 FMN 902 B 1 HETATM 4 N N3 FMN . . . G 3 25.63 -18.594 -54.53 1 106.51 ? N3 FMN 902 B 1 HETATM 5 C C4 FMN . . . G 3 24.613 -19.172 -53.904 1 114.52 ? C4 FMN 902 B 1 HETATM 6 O O4 FMN . . . G 3 24.289 -18.784 -52.832 1 117.32 ? O4 FMN 902 B 1 HETATM 7 C C4A FMN . . . G 3 23.94 -20.217 -54.497 1 116.71 ? C4A FMN 902 B 1 HETATM 8 N N5 FMN . . . G 3 22.902 -20.805 -53.853 1 108.34 ? N5 FMN 902 B 1 HETATM 9 C C5A FMN . . . G 3 22.241 -21.824 -54.426 1 110.76 ? C5A FMN 902 B 1 HETATM 10 C C6 FMN . . . G 3 21.161 -22.43 -53.749 1 105.34 ? C6 FMN 902 B 1 HETATM 11 C C7 FMN . . . G 3 20.472 -23.484 -54.335 1 101.32 ? C7 FMN 902 B 1 HETATM 12 C C7M FMN . . . G 3 19.33 -24.044 -53.49 1 89.89 ? C7M FMN 902 B 1 HETATM 13 C C8 FMN . . . G 3 20.849 -23.942 -55.592 1 105.1 ? C8 FMN 902 B 1 HETATM 14 C C8M FMN . . . G 3 20.112 -25.099 -56.264 1 102.47 ? C8M FMN 902 B 1 HETATM 15 C C9 FMN . . . G 3 21.909 -23.346 -56.259 1 112.1 ? C9 FMN 902 B 1 HETATM 16 C C9A FMN . . . G 3 22.616 -22.274 -55.666 1 118.8 ? C9A FMN 902 B 1 HETATM 17 N N10 FMN . . . G 3 23.649 -21.691 -56.308 1 122.35 ? N10 FMN 902 B 1 HETATM 18 C C10 FMN . . . G 3 24.314 -20.656 -55.725 1 119.17 ? C10 FMN 902 B 1 HETATM 19 C C1' FMN . . . G 3 24.166 -22.051 -57.623 1 120.06 ? C1' FMN 902 B 1 HETATM 20 C C2' FMN . . . G 3 25.026 -23.315 -57.539 1 117.14 ? C2' FMN 902 B 1 HETATM 21 O O2' FMN . . . G 3 26.268 -23.003 -56.975 1 122.41 ? O2' FMN 902 B 1 HETATM 22 C C3' FMN . . . G 3 25.228 -23.895 -58.938 1 110.79 ? C3' FMN 902 B 1 HETATM 23 O O3' FMN . . . G 3 24.045 -24.502 -59.377 1 112.13 ? O3' FMN 902 B 1 HETATM 24 C C4' FMN . . . G 3 26.347 -24.934 -58.907 1 104.5 ? C4' FMN 902 B 1 HETATM 25 O O4' FMN . . . G 3 26.802 -25.159 -60.209 1 100.15 ? O4' FMN 902 B 1 HETATM 26 C C5' FMN . . . G 3 25.831 -26.25 -58.326 1 112.45 ? C5' FMN 902 B 1 HETATM 27 O O5' FMN . . . G 3 26.895 -27.161 -58.266 1 115.64 ? O5' FMN 902 B 1 HETATM 28 P P FMN . . . G 3 26.578 -28.773 -58.123 1 101.66 ? P FMN 902 B 1 HETATM 29 O O1P FMN . . . G 3 27.838 -29.553 -58.406 1 103.32 ? O1P FMN 902 B 1 HETATM 30 O O2P FMN . . . G 3 25.512 -29.167 -59.114 1 98.49 ? O2P FMN 902 B 1 HETATM 31 O O3P FMN . . . G 3 26.097 -29.08 -56.726 1 105.09 ? O3P FMN 902 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #