data_6J79 # _model_server_result.job_id xQKoyJcARNRmbPcEkd-OnA _model_server_result.datetime_utc '2024-11-16 09:40:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 6J79 # _exptl.entry_id 6J79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J79 _cell.length_a 83.36 _cell.length_b 159.78 _cell.length_c 189.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 45 A HIS 25 1_555 E FE HEM . A HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc2 E FE HEM . A HEM 903 1_555 I O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc3 B NE2 HIS 45 B HIS 25 1_555 H FE HEM . B HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc4 H FE HEM . B HEM 903 1_555 J O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 274 n n CHA C4D HEM doub 275 n n CHA HHA HEM sing 276 n n CHB C4A HEM sing 277 n n CHB C1B HEM doub 278 n n CHB HHB HEM sing 279 n n CHC C4B HEM sing 280 n n CHC C1C HEM doub 281 n n CHC HHC HEM sing 282 n n CHD C4C HEM doub 283 n n CHD C1D HEM sing 284 n n CHD HHD HEM sing 285 n n C1A C2A HEM doub 286 n y C1A NA HEM sing 287 n y C2A C3A HEM sing 288 n y C2A CAA HEM sing 289 n n C3A C4A HEM doub 290 n y C3A CMA HEM sing 291 n n C4A NA HEM sing 292 n y CMA HMA HEM sing 293 n n CMA HMAA HEM sing 294 n n CMA HMAB HEM sing 295 n n CAA CBA HEM sing 296 n n CAA HAA HEM sing 297 n n CAA HAAA HEM sing 298 n n CBA CGA HEM sing 299 n n CBA HBA HEM sing 300 n n CBA HBAA HEM sing 301 n n CGA O1A HEM doub 302 n n CGA O2A HEM sing 303 n n C1B C2B HEM sing 304 n n C1B NB HEM sing 305 n n C2B C3B HEM doub 306 n n C2B CMB HEM sing 307 n n C3B C4B HEM sing 308 n n C3B CAB HEM sing 309 n n C4B NB HEM doub 310 n n CMB HMB HEM sing 311 n n CMB HMBA HEM sing 312 n n CMB HMBB HEM sing 313 n n CAB CBB HEM doub 314 n n CAB HAB HEM sing 315 n n CBB HBB HEM sing 316 n n CBB HBBA HEM sing 317 n n C1C C2C HEM sing 318 n y C1C NC HEM sing 319 n y C2C C3C HEM doub 320 n y C2C CMC HEM sing 321 n n C3C C4C HEM sing 322 n y C3C CAC HEM sing 323 n n C4C NC HEM sing 324 n y CMC HMC HEM sing 325 n n CMC HMCA HEM sing 326 n n CMC HMCB HEM sing 327 n n CAC CBC HEM doub 328 n n CAC HAC HEM sing 329 n n CBC HBC HEM sing 330 n n CBC HBCA HEM sing 331 n n C1D C2D HEM sing 332 n n C1D ND HEM doub 333 n n C2D C3D HEM doub 334 n n C2D CMD HEM sing 335 n n C3D C4D HEM sing 336 n n C3D CAD HEM sing 337 n n C4D ND HEM sing 338 n n CMD HMD HEM sing 339 n n CMD HMDA HEM sing 340 n n CMD HMDB HEM sing 341 n n CAD CBD HEM sing 342 n n CAD HAD HEM sing 343 n n CAD HADA HEM sing 344 n n CBD CGD HEM sing 345 n n CBD HBD HEM sing 346 n n CBD HBDA HEM sing 347 n n CGD O1D HEM doub 348 n n CGD O2D HEM sing 349 n n O2A H2A HEM sing 350 n n O2D H2D HEM sing 351 n n FE NA HEM sing 352 n n FE NB HEM sing 353 n n FE NC HEM sing 354 n n FE ND HEM sing 355 n n # _atom_sites.entry_id 6J79 _atom_sites.fract_transf_matrix[1][1] 0.011996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 901 852 FAD FAD . D 3 FMN A 1 902 853 FMN FMN . E 4 HEM A 1 903 854 HEM HEM . F 2 FAD B 1 901 852 FAD FAD . G 3 FMN B 1 902 853 FMN FMN . H 4 HEM B 1 903 854 HEM HEM . I 5 HOH A 1 1001 1 HOH HOH . I 5 HOH A 2 1002 9 HOH HOH . I 5 HOH A 3 1003 11 HOH HOH . I 5 HOH A 4 1004 6 HOH HOH . I 5 HOH A 5 1005 12 HOH HOH . I 5 HOH A 6 1006 5 HOH HOH . J 5 HOH B 1 1001 2 HOH HOH . J 5 HOH B 2 1002 15 HOH HOH . J 5 HOH B 3 1003 14 HOH HOH . J 5 HOH B 4 1004 8 HOH HOH . J 5 HOH B 5 1005 4 HOH HOH . J 5 HOH B 6 1006 16 HOH HOH . J 5 HOH B 7 1007 13 HOH HOH . J 5 HOH B 8 1008 10 HOH HOH . J 5 HOH B 9 1009 7 HOH HOH . J 5 HOH B 10 1010 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 4 11.687 7.299 -41.306 1 91.27 ? CHA HEM 903 A 1 HETATM 2 C CHB HEM . . . E 4 13.628 10.498 -44.365 1 113.19 ? CHB HEM 903 A 1 HETATM 3 C CHC HEM . . . E 4 10.651 13.939 -42.607 1 111.06 ? CHC HEM 903 A 1 HETATM 4 C CHD HEM . . . E 4 9.361 10.923 -39.061 1 76.55 ? CHD HEM 903 A 1 HETATM 5 C C1A HEM . . . E 4 12.426 7.91 -42.28 1 95.24 ? C1A HEM 903 A 1 HETATM 6 C C2A HEM . . . E 4 13.431 7.242 -43.006 1 102.61 ? C2A HEM 903 A 1 HETATM 7 C C3A HEM . . . E 4 13.974 8.135 -43.862 1 101.87 ? C3A HEM 903 A 1 HETATM 8 C C4A HEM . . . E 4 13.315 9.362 -43.664 1 100.26 ? C4A HEM 903 A 1 HETATM 9 C CMA HEM . . . E 4 15.082 7.868 -44.847 1 102.91 ? CMA HEM 903 A 1 HETATM 10 C CAA HEM . . . E 4 13.823 5.793 -42.874 1 120.53 ? CAA HEM 903 A 1 HETATM 11 C CBA HEM . . . E 4 14.83 5.586 -41.743 1 145.59 ? CBA HEM 903 A 1 HETATM 12 C CGA HEM . . . E 4 14.79 4.139 -41.322 1 160.92 ? CGA HEM 903 A 1 HETATM 13 O O1A HEM . . . E 4 13.707 3.617 -40.974 1 157.4 ? O1A HEM 903 A 1 HETATM 14 O O2A HEM . . . E 4 15.84 3.458 -41.327 1 167.39 ? O2A HEM 903 A 1 HETATM 15 C C1B HEM . . . E 4 12.972 11.696 -44.106 1 113.6 ? C1B HEM 903 A 1 HETATM 16 C C2B HEM . . . E 4 13.304 12.883 -44.808 1 119.55 ? C2B HEM 903 A 1 HETATM 17 C C3B HEM . . . E 4 12.486 13.868 -44.337 1 123.23 ? C3B HEM 903 A 1 HETATM 18 C C4B HEM . . . E 4 11.628 13.225 -43.313 1 112.42 ? C4B HEM 903 A 1 HETATM 19 C CMB HEM . . . E 4 14.367 13.007 -45.871 1 118.98 ? CMB HEM 903 A 1 HETATM 20 C CAB HEM . . . E 4 12.438 15.284 -44.752 1 132.98 ? CAB HEM 903 A 1 HETATM 21 C CBB HEM . . . E 4 13.504 16.073 -44.624 1 140.98 ? CBB HEM 903 A 1 HETATM 22 C C1C HEM . . . E 4 10.075 13.466 -41.436 1 103.88 ? C1C HEM 903 A 1 HETATM 23 C C2C HEM . . . E 4 9.355 14.217 -40.494 1 109.01 ? C2C HEM 903 A 1 HETATM 24 C C3C HEM . . . E 4 8.988 13.345 -39.468 1 103.49 ? C3C HEM 903 A 1 HETATM 25 C C4C HEM . . . E 4 9.495 12.061 -39.815 1 88.28 ? C4C HEM 903 A 1 HETATM 26 C CMC HEM . . . E 4 9.062 15.693 -40.622 1 115.51 ? CMC HEM 903 A 1 HETATM 27 C CAC HEM . . . E 4 8.208 13.63 -38.245 1 108.07 ? CAC HEM 903 A 1 HETATM 28 C CBC HEM . . . E 4 8.371 14.741 -37.531 1 111.03 ? CBC HEM 903 A 1 HETATM 29 C C1D HEM . . . E 4 9.941 9.702 -39.421 1 80.17 ? C1D HEM 903 A 1 HETATM 30 C C2D HEM . . . E 4 9.801 8.528 -38.552 1 93.94 ? C2D HEM 903 A 1 HETATM 31 C C3D HEM . . . E 4 10.442 7.521 -39.166 1 94.63 ? C3D HEM 903 A 1 HETATM 32 C C4D HEM . . . E 4 10.973 8.078 -40.415 1 86.81 ? C4D HEM 903 A 1 HETATM 33 C CMD HEM . . . E 4 9.08 8.468 -37.23 1 95.42 ? CMD HEM 903 A 1 HETATM 34 C CAD HEM . . . E 4 10.581 6.107 -38.664 1 98.34 ? CAD HEM 903 A 1 HETATM 35 C CBD HEM . . . E 4 9.574 5.195 -39.364 1 102.55 ? CBD HEM 903 A 1 HETATM 36 C CGD HEM . . . E 4 9.732 3.782 -38.858 1 98.59 ? CGD HEM 903 A 1 HETATM 37 O O1D HEM . . . E 4 8.851 3.262 -38.134 1 84.74 ? O1D HEM 903 A 1 HETATM 38 O O2D HEM . . . E 4 10.753 3.126 -39.166 1 99.58 ? O2D HEM 903 A 1 HETATM 39 N NA HEM . . . E 4 12.355 9.227 -42.686 1 94 ? NA HEM 903 A 1 HETATM 40 N NB HEM . . . E 4 12.001 11.931 -43.215 1 104.28 ? NB HEM 903 A 1 HETATM 41 N NC HEM . . . E 4 10.142 12.177 -41.01 1 94.04 ? NC HEM 903 A 1 HETATM 42 N ND HEM . . . E 4 10.676 9.386 -40.505 1 78.41 ? ND HEM 903 A 1 HETATM 43 FE FE HEM . . . E 4 11.071 10.555 -41.915 1 87.29 ? FE HEM 903 A 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #