data_6J79
#
_model_server_result.job_id            7pSrc4CFED_-1jnYPe29_g 
_model_server_result.datetime_utc      '2024-11-16 09:59:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":903}' 
#
_entry.id    6J79 
#
_exptl.entry_id    6J79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6J79 
_cell.length_a            83.36 
_cell.length_b            159.78 
_cell.length_c            189.59 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 45 A HIS 25 1_555 E FE HEM . A HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc2 E FE HEM . A HEM 903 1_555 I O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc3 B NE2 HIS 45 B HIS 25 1_555 H FE HEM . B HEM 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc4 H FE HEM . B HEM 903 1_555 J O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 274 n n 
CHA C4D HEM doub 275 n n 
CHA HHA HEM sing 276 n n 
CHB C4A HEM sing 277 n n 
CHB C1B HEM doub 278 n n 
CHB HHB HEM sing 279 n n 
CHC C4B HEM sing 280 n n 
CHC C1C HEM doub 281 n n 
CHC HHC HEM sing 282 n n 
CHD C4C HEM doub 283 n n 
CHD C1D HEM sing 284 n n 
CHD HHD HEM sing 285 n n 
C1A C2A HEM doub 286 n y 
C1A NA HEM sing 287 n y 
C2A C3A HEM sing 288 n y 
C2A CAA HEM sing 289 n n 
C3A C4A HEM doub 290 n y 
C3A CMA HEM sing 291 n n 
C4A NA HEM sing 292 n y 
CMA HMA HEM sing 293 n n 
CMA HMAA HEM sing 294 n n 
CMA HMAB HEM sing 295 n n 
CAA CBA HEM sing 296 n n 
CAA HAA HEM sing 297 n n 
CAA HAAA HEM sing 298 n n 
CBA CGA HEM sing 299 n n 
CBA HBA HEM sing 300 n n 
CBA HBAA HEM sing 301 n n 
CGA O1A HEM doub 302 n n 
CGA O2A HEM sing 303 n n 
C1B C2B HEM sing 304 n n 
C1B NB HEM sing 305 n n 
C2B C3B HEM doub 306 n n 
C2B CMB HEM sing 307 n n 
C3B C4B HEM sing 308 n n 
C3B CAB HEM sing 309 n n 
C4B NB HEM doub 310 n n 
CMB HMB HEM sing 311 n n 
CMB HMBA HEM sing 312 n n 
CMB HMBB HEM sing 313 n n 
CAB CBB HEM doub 314 n n 
CAB HAB HEM sing 315 n n 
CBB HBB HEM sing 316 n n 
CBB HBBA HEM sing 317 n n 
C1C C2C HEM sing 318 n y 
C1C NC HEM sing 319 n y 
C2C C3C HEM doub 320 n y 
C2C CMC HEM sing 321 n n 
C3C C4C HEM sing 322 n y 
C3C CAC HEM sing 323 n n 
C4C NC HEM sing 324 n y 
CMC HMC HEM sing 325 n n 
CMC HMCA HEM sing 326 n n 
CMC HMCB HEM sing 327 n n 
CAC CBC HEM doub 328 n n 
CAC HAC HEM sing 329 n n 
CBC HBC HEM sing 330 n n 
CBC HBCA HEM sing 331 n n 
C1D C2D HEM sing 332 n n 
C1D ND HEM doub 333 n n 
C2D C3D HEM doub 334 n n 
C2D CMD HEM sing 335 n n 
C3D C4D HEM sing 336 n n 
C3D CAD HEM sing 337 n n 
C4D ND HEM sing 338 n n 
CMD HMD HEM sing 339 n n 
CMD HMDA HEM sing 340 n n 
CMD HMDB HEM sing 341 n n 
CAD CBD HEM sing 342 n n 
CAD HAD HEM sing 343 n n 
CAD HADA HEM sing 344 n n 
CBD CGD HEM sing 345 n n 
CBD HBD HEM sing 346 n n 
CBD HBDA HEM sing 347 n n 
CGD O1D HEM doub 348 n n 
CGD O2D HEM sing 349 n n 
O2A H2A HEM sing 350 n n 
O2D H2D HEM sing 351 n n 
FE NA HEM sing 352 n n 
FE NB HEM sing 353 n n 
FE NC HEM sing 354 n n 
FE ND HEM sing 355 n n 
#
_atom_sites.entry_id                     6J79 
_atom_sites.fract_transf_matrix[1][1]    0.011996 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 901 852 FAD FAD . 
D 3 FMN A 1 902 853 FMN FMN . 
E 4 HEM A 1 903 854 HEM HEM . 
F 2 FAD B 1 901 852 FAD FAD . 
G 3 FMN B 1 902 853 FMN FMN . 
H 4 HEM B 1 903 854 HEM HEM . 
I 5 HOH A 1 1001 1 HOH HOH . 
I 5 HOH A 2 1002 9 HOH HOH . 
I 5 HOH A 3 1003 11 HOH HOH . 
I 5 HOH A 4 1004 6 HOH HOH . 
I 5 HOH A 5 1005 12 HOH HOH . 
I 5 HOH A 6 1006 5 HOH HOH . 
J 5 HOH B 1 1001 2 HOH HOH . 
J 5 HOH B 2 1002 15 HOH HOH . 
J 5 HOH B 3 1003 14 HOH HOH . 
J 5 HOH B 4 1004 8 HOH HOH . 
J 5 HOH B 5 1005 4 HOH HOH . 
J 5 HOH B 6 1006 16 HOH HOH . 
J 5 HOH B 7 1007 13 HOH HOH . 
J 5 HOH B 8 1008 10 HOH HOH . 
J 5 HOH B 9 1009 7 HOH HOH . 
J 5 HOH B 10 1010 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 4 7.422 -20.887 -57.833 1 110.15 ? CHA HEM 903 B 1 
HETATM 2 C CHB HEM . . . H 4 10.543 -24.056 -55.945 1 112 ? CHB HEM 903 B 1 
HETATM 3 C CHC HEM . . . H 4 7.09 -27.503 -56.092 1 100.07 ? CHC HEM 903 B 1 
HETATM 4 C CHD HEM . . . H 4 4.342 -24.53 -58.733 1 97.43 ? CHD HEM 903 B 1 
HETATM 5 C C1A HEM . . . H 4 8.523 -21.49 -57.293 1 109.23 ? C1A HEM 903 B 1 
HETATM 6 C C2A HEM . . . H 4 9.744 -20.813 -57.117 1 106.3 ? C2A HEM 903 B 1 
HETATM 7 C C3A HEM . . . H 4 10.62 -21.696 -56.59 1 111.08 ? C3A HEM 903 B 1 
HETATM 8 C C4A HEM . . . H 4 9.947 -22.926 -56.446 1 109.32 ? C4A HEM 903 B 1 
HETATM 9 C CMA HEM . . . H 4 12.054 -21.413 -56.223 1 116.35 ? CMA HEM 903 B 1 
HETATM 10 C CAA HEM . . . H 4 10.015 -19.365 -57.437 1 116.71 ? CAA HEM 903 B 1 
HETATM 11 C CBA HEM . . . H 4 10.389 -19.16 -58.905 1 140.37 ? CBA HEM 903 B 1 
HETATM 12 C CGA HEM . . . H 4 10.131 -17.718 -59.268 1 152.27 ? CGA HEM 903 B 1 
HETATM 13 O O1A HEM . . . H 4 8.996 -17.221 -59.09 1 148.18 ? O1A HEM 903 B 1 
HETATM 14 O O2A HEM . . . H 4 11.049 -17.015 -59.747 1 155.17 ? O2A HEM 903 B 1 
HETATM 15 C C1B HEM . . . H 4 9.841 -25.253 -55.855 1 111.91 ? C1B HEM 903 B 1 
HETATM 16 C C2B HEM . . . H 4 10.453 -26.433 -55.356 1 114.56 ? C2B HEM 903 B 1 
HETATM 17 C C3B HEM . . . H 4 9.51 -27.417 -55.386 1 113.59 ? C3B HEM 903 B 1 
HETATM 18 C C4B HEM . . . H 4 8.281 -26.784 -55.919 1 110.96 ? C4B HEM 903 B 1 
HETATM 19 C CMB HEM . . . H 4 11.882 -26.552 -54.89 1 117.64 ? CMB HEM 903 B 1 
HETATM 20 C CAB HEM . . . H 4 9.655 -28.825 -54.968 1 119.92 ? CAB HEM 903 B 1 
HETATM 21 C CBB HEM . . . H 4 10.546 -29.621 -55.556 1 133.23 ? CBB HEM 903 B 1 
HETATM 22 C C1C HEM . . . H 4 6.048 -27.046 -56.887 1 95.93 ? C1C HEM 903 B 1 
HETATM 23 C C2C HEM . . . H 4 4.98 -27.805 -57.394 1 103.09 ? C2C HEM 903 B 1 
HETATM 24 C C3C HEM . . . H 4 4.194 -26.945 -58.161 1 109.44 ? C3C HEM 903 B 1 
HETATM 25 C C4C HEM . . . H 4 4.803 -25.659 -58.101 1 100.66 ? C4C HEM 903 B 1 
HETATM 26 C CMC HEM . . . H 4 4.769 -29.276 -57.125 1 106.81 ? CMC HEM 903 B 1 
HETATM 27 C CAC HEM . . . H 4 2.946 -27.24 -58.897 1 119.46 ? CAC HEM 903 B 1 
HETATM 28 C CBC HEM . . . H 4 2.767 -28.361 -59.59 1 128.42 ? CBC HEM 903 B 1 
HETATM 29 C C1D HEM . . . H 4 5.016 -23.304 -58.692 1 91.36 ? C1D HEM 903 B 1 
HETATM 30 C C2D HEM . . . H 4 4.499 -22.139 -59.421 1 89.55 ? C2D HEM 903 B 1 
HETATM 31 C C3D HEM . . . H 4 5.347 -21.126 -59.173 1 96.85 ? C3D HEM 903 B 1 
HETATM 32 C C4D HEM . . . H 4 6.384 -21.674 -58.294 1 100.65 ? C4D HEM 903 B 1 
HETATM 33 C CMD HEM . . . H 4 3.26 -22.087 -60.276 1 79.88 ? CMD HEM 903 B 1 
HETATM 34 C CAD HEM . . . H 4 5.256 -19.715 -59.699 1 103.37 ? CAD HEM 903 B 1 
HETATM 35 C CBD HEM . . . H 4 4.693 -18.786 -58.622 1 109.83 ? CBD HEM 903 B 1 
HETATM 36 C CGD HEM . . . H 4 4.605 -17.374 -59.147 1 105.01 ? CGD HEM 903 B 1 
HETATM 37 O O1D HEM . . . H 4 3.488 -16.856 -59.373 1 96.62 ? O1D HEM 903 B 1 
HETATM 38 O O2D HEM . . . H 4 5.649 -16.716 -59.354 1 102.3 ? O2D HEM 903 B 1 
HETATM 39 N NA HEM . . . H 4 8.645 -22.801 -56.881 1 104.86 ? NA HEM 903 B 1 
HETATM 40 N NB HEM . . . H 4 8.571 -25.495 -56.202 1 114.03 ? NB HEM 903 B 1 
HETATM 41 N NC HEM . . . H 4 5.916 -25.764 -57.322 1 93.01 ? NC HEM 903 B 1 
HETATM 42 N ND HEM . . . H 4 6.16 -22.979 -58.06 1 92.39 ? ND HEM 903 B 1 
HETATM 43 FE FE HEM . . . H 4 7.15 -24.132 -56.964 1 114.17 ? FE HEM 903 B 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    76 
_model_server_stats.query_time_ms           608 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#