data_6J7A
#
_model_server_result.job_id            3o5Kgm0IQbU3JWCDm5BWFA 
_model_server_result.datetime_utc      '2025-03-04 13:29:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j7a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    6J7A 
#
_exptl.entry_id    6J7A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6J7A 
_cell.length_a            82.686 
_cell.length_b            160.191 
_cell.length_c            188.832 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6J7A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 45 A HIS 25 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc2 B NE2 HIS 45 B HIS 25 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 274 n n 
CHA C4D HEM doub 275 n n 
CHA HHA HEM sing 276 n n 
CHB C4A HEM sing 277 n n 
CHB C1B HEM doub 278 n n 
CHB HHB HEM sing 279 n n 
CHC C4B HEM sing 280 n n 
CHC C1C HEM doub 281 n n 
CHC HHC HEM sing 282 n n 
CHD C4C HEM doub 283 n n 
CHD C1D HEM sing 284 n n 
CHD HHD HEM sing 285 n n 
C1A C2A HEM doub 286 n y 
C1A NA HEM sing 287 n y 
C2A C3A HEM sing 288 n y 
C2A CAA HEM sing 289 n n 
C3A C4A HEM doub 290 n y 
C3A CMA HEM sing 291 n n 
C4A NA HEM sing 292 n y 
CMA HMA HEM sing 293 n n 
CMA HMAA HEM sing 294 n n 
CMA HMAB HEM sing 295 n n 
CAA CBA HEM sing 296 n n 
CAA HAA HEM sing 297 n n 
CAA HAAA HEM sing 298 n n 
CBA CGA HEM sing 299 n n 
CBA HBA HEM sing 300 n n 
CBA HBAA HEM sing 301 n n 
CGA O1A HEM doub 302 n n 
CGA O2A HEM sing 303 n n 
C1B C2B HEM sing 304 n n 
C1B NB HEM sing 305 n n 
C2B C3B HEM doub 306 n n 
C2B CMB HEM sing 307 n n 
C3B C4B HEM sing 308 n n 
C3B CAB HEM sing 309 n n 
C4B NB HEM doub 310 n n 
CMB HMB HEM sing 311 n n 
CMB HMBA HEM sing 312 n n 
CMB HMBB HEM sing 313 n n 
CAB CBB HEM doub 314 n n 
CAB HAB HEM sing 315 n n 
CBB HBB HEM sing 316 n n 
CBB HBBA HEM sing 317 n n 
C1C C2C HEM sing 318 n y 
C1C NC HEM sing 319 n y 
C2C C3C HEM doub 320 n y 
C2C CMC HEM sing 321 n n 
C3C C4C HEM sing 322 n y 
C3C CAC HEM sing 323 n n 
C4C NC HEM sing 324 n y 
CMC HMC HEM sing 325 n n 
CMC HMCA HEM sing 326 n n 
CMC HMCB HEM sing 327 n n 
CAC CBC HEM doub 328 n n 
CAC HAC HEM sing 329 n n 
CBC HBC HEM sing 330 n n 
CBC HBCA HEM sing 331 n n 
C1D C2D HEM sing 332 n n 
C1D ND HEM doub 333 n n 
C2D C3D HEM doub 334 n n 
C2D CMD HEM sing 335 n n 
C3D C4D HEM sing 336 n n 
C3D CAD HEM sing 337 n n 
C4D ND HEM sing 338 n n 
CMD HMD HEM sing 339 n n 
CMD HMDA HEM sing 340 n n 
CMD HMDB HEM sing 341 n n 
CAD CBD HEM sing 342 n n 
CAD HAD HEM sing 343 n n 
CAD HADA HEM sing 344 n n 
CBD CGD HEM sing 345 n n 
CBD HBD HEM sing 346 n n 
CBD HBDA HEM sing 347 n n 
CGD O1D HEM doub 348 n n 
CGD O2D HEM sing 349 n n 
O2A H2A HEM sing 350 n n 
O2D H2D HEM sing 351 n n 
FE NA HEM sing 352 n n 
FE NB HEM sing 353 n n 
FE NC HEM sing 354 n n 
FE ND HEM sing 355 n n 
#
_atom_sites.entry_id                     6J7A 
_atom_sites.fract_transf_matrix[1][1]    0.012094 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006243 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 901 904 HEM HEM . 
D 3 FAD A 1 902 931 FAD FAD . 
E 4 FMN A 1 903 932 FMN FMN . 
F 2 HEM B 1 901 904 HEM HEM . 
G 3 FAD B 1 902 931 FAD FAD . 
H 4 FMN B 1 903 932 FMN FMN . 
I 5 HOH A 1 1001 3 HOH HOH . 
J 5 HOH B 1 1001 1 HOH HOH . 
J 5 HOH B 2 1002 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 2 -33.921 -20.881 -58.069 1 52.48 ? CHA HEM 901 B 1 
HETATM 2 C CHB HEM . . . F 2 -31.047 -23.816 -55.508 1 64.74 ? CHB HEM 901 B 1 
HETATM 3 C CHC HEM . . . F 2 -34.12 -27.513 -56.334 1 53.73 ? CHC HEM 901 B 1 
HETATM 4 C CHD HEM . . . F 2 -37.196 -24.444 -58.459 1 46.54 ? CHD HEM 901 B 1 
HETATM 5 C C1A HEM . . . F 2 -32.915 -21.414 -57.311 1 58.37 ? C1A HEM 901 B 1 
HETATM 6 C C2A HEM . . . F 2 -31.843 -20.638 -56.832 1 60.58 ? C2A HEM 901 B 1 
HETATM 7 C C3A HEM . . . F 2 -31.038 -21.452 -56.116 1 59.99 ? C3A HEM 901 B 1 
HETATM 8 C C4A HEM . . . F 2 -31.608 -22.737 -56.144 1 59.15 ? C4A HEM 901 B 1 
HETATM 9 C CMA HEM . . . F 2 -29.764 -21.057 -55.415 1 61.48 ? CMA HEM 901 B 1 
HETATM 10 C CAA HEM . . . F 2 -31.63 -19.167 -57.071 1 68.36 ? CAA HEM 901 B 1 
HETATM 11 C CBA HEM . . . F 2 -30.975 -18.931 -58.433 1 73.47 ? CBA HEM 901 B 1 
HETATM 12 C CGA HEM . . . F 2 -31.38 -17.569 -58.935 1 78.84 ? CGA HEM 901 B 1 
HETATM 13 O O1A HEM . . . F 2 -32.09 -16.826 -58.221 1 79.26 ? O1A HEM 901 B 1 
HETATM 14 O O2A HEM . . . F 2 -31.007 -17.182 -60.065 1 83.44 ? O2A HEM 901 B 1 
HETATM 15 C C1B HEM . . . F 2 -31.675 -25.055 -55.528 1 59.86 ? C1B HEM 901 B 1 
HETATM 16 C C2B HEM . . . F 2 -31.13 -26.176 -54.847 1 56.71 ? C2B HEM 901 B 1 
HETATM 17 C C3B HEM . . . F 2 -31.971 -27.222 -55.063 1 54.14 ? C3B HEM 901 B 1 
HETATM 18 C C4B HEM . . . F 2 -33.062 -26.698 -55.914 1 56.61 ? C4B HEM 901 B 1 
HETATM 19 C CMB HEM . . . F 2 -29.86 -26.203 -54.037 1 56.9 ? CMB HEM 901 B 1 
HETATM 20 C CAB HEM . . . F 2 -31.828 -28.602 -54.565 1 53.72 ? CAB HEM 901 B 1 
HETATM 21 C CBB HEM . . . F 2 -30.961 -29.429 -55.142 1 54.3 ? CBB HEM 901 B 1 
HETATM 22 C C1C HEM . . . F 2 -35.267 -27.02 -56.941 1 49.37 ? C1C HEM 901 B 1 
HETATM 23 C C2C HEM . . . F 2 -36.453 -27.728 -57.192 1 46.41 ? C2C HEM 901 B 1 
HETATM 24 C C3C HEM . . . F 2 -37.336 -26.845 -57.809 1 46.36 ? C3C HEM 901 B 1 
HETATM 25 C C4C HEM . . . F 2 -36.669 -25.591 -57.914 1 47.51 ? C4C HEM 901 B 1 
HETATM 26 C CMC HEM . . . F 2 -36.692 -29.179 -56.849 1 45.33 ? CMC HEM 901 B 1 
HETATM 27 C CAC HEM . . . F 2 -38.716 -27.111 -58.264 1 46.66 ? CAC HEM 901 B 1 
HETATM 28 C CBC HEM . . . F 2 -39.005 -28.154 -59.038 1 45.5 ? CBC HEM 901 B 1 
HETATM 29 C C1D HEM . . . F 2 -36.505 -23.226 -58.489 1 46.39 ? C1D HEM 901 B 1 
HETATM 30 C C2D HEM . . . F 2 -37.143 -22.022 -59.033 1 45.18 ? C2D HEM 901 B 1 
HETATM 31 C C3D HEM . . . F 2 -36.242 -21.032 -58.926 1 44.68 ? C3D HEM 901 B 1 
HETATM 32 C C4D HEM . . . F 2 -35.05 -21.632 -58.317 1 47.62 ? C4D HEM 901 B 1 
HETATM 33 C CMD HEM . . . F 2 -38.535 -21.919 -59.598 1 45.36 ? CMD HEM 901 B 1 
HETATM 34 C CAD HEM . . . F 2 -36.419 -19.599 -59.361 1 41.34 ? CAD HEM 901 B 1 
HETATM 35 C CBD HEM . . . F 2 -36.844 -18.688 -58.212 1 38.8 ? CBD HEM 901 B 1 
HETATM 36 C CGD HEM . . . F 2 -36.984 -17.286 -58.752 1 37.01 ? CGD HEM 901 B 1 
HETATM 37 O O1D HEM . . . F 2 -38.12 -16.788 -58.93 1 33.76 ? O1D HEM 901 B 1 
HETATM 38 O O2D HEM . . . F 2 -35.963 -16.619 -59.033 1 36.28 ? O2D HEM 901 B 1 
HETATM 39 N NA HEM . . . F 2 -32.769 -22.72 -56.888 1 55.58 ? NA HEM 901 B 1 
HETATM 40 N NB HEM . . . F 2 -32.829 -25.384 -56.122 1 57.93 ? NB HEM 901 B 1 
HETATM 41 N NC HEM . . . F 2 -35.42 -25.746 -57.392 1 47.46 ? NC HEM 901 B 1 
HETATM 42 N ND HEM . . . F 2 -35.267 -22.928 -58.043 1 47.48 ? ND HEM 901 B 1 
HETATM 43 FE FE HEM . . . F 2 -34.071 -24.173 -57.322 1 51.15 ? FE HEM 901 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#