data_6J7A # _model_server_result.job_id 90KKMI7ADOEyZgdUHkAoIw _model_server_result.datetime_utc '2025-03-04 13:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 6J7A # _exptl.entry_id 6J7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J7A _cell.length_a 82.686 _cell.length_b 160.191 _cell.length_c 188.832 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 45 A HIS 25 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 B NE2 HIS 45 B HIS 25 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 6J7A _atom_sites.fract_transf_matrix[1][1] 0.012094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 904 HEM HEM . D 3 FAD A 1 902 931 FAD FAD . E 4 FMN A 1 903 932 FMN FMN . F 2 HEM B 1 901 904 HEM HEM . G 3 FAD B 1 902 931 FAD FAD . H 4 FMN B 1 903 932 FMN FMN . I 5 HOH A 1 1001 3 HOH HOH . J 5 HOH B 1 1001 1 HOH HOH . J 5 HOH B 2 1002 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 4 -14.606 6.201 -50.876 1 55.13 ? N1 FMN 903 A 1 HETATM 2 C C2 FMN . . . E 4 -14.303 5.133 -51.663 1 55.38 ? C2 FMN 903 A 1 HETATM 3 O O2 FMN . . . E 4 -13.253 4.593 -51.568 1 55 ? O2 FMN 903 A 1 HETATM 4 N N3 FMN . . . E 4 -15.205 4.67 -52.572 1 55.79 ? N3 FMN 903 A 1 HETATM 5 C C4 FMN . . . E 4 -16.385 5.261 -52.692 1 55.73 ? C4 FMN 903 A 1 HETATM 6 O O4 FMN . . . E 4 -17.167 4.855 -53.484 1 55.16 ? O4 FMN 903 A 1 HETATM 7 C C4A FMN . . . E 4 -16.697 6.342 -51.898 1 56.88 ? C4A FMN 903 A 1 HETATM 8 N N5 FMN . . . E 4 -17.905 6.94 -52.028 1 56.11 ? N5 FMN 903 A 1 HETATM 9 C C5A FMN . . . E 4 -18.221 7.993 -51.261 1 55.78 ? C5A FMN 903 A 1 HETATM 10 C C6 FMN . . . E 4 -19.484 8.603 -51.408 1 56.33 ? C6 FMN 903 A 1 HETATM 11 C C7 FMN . . . E 4 -19.826 9.694 -50.622 1 56.36 ? C7 FMN 903 A 1 HETATM 12 C C7M FMN . . . E 4 -21.223 10.248 -50.894 1 55.06 ? C7M FMN 903 A 1 HETATM 13 C C8 FMN . . . E 4 -18.922 10.185 -49.687 1 55.28 ? C8 FMN 903 A 1 HETATM 14 C C8M FMN . . . E 4 -19.271 11.384 -48.806 1 54.55 ? C8M FMN 903 A 1 HETATM 15 C C9 FMN . . . E 4 -17.68 9.582 -49.542 1 54.95 ? C9 FMN 903 A 1 HETATM 16 C C9A FMN . . . E 4 -17.323 8.471 -50.341 1 56.68 ? C9A FMN 903 A 1 HETATM 17 N N10 FMN . . . E 4 -16.116 7.881 -50.212 1 59.13 ? N10 FMN 903 A 1 HETATM 18 C C10 FMN . . . E 4 -15.802 6.808 -50.991 1 56.91 ? C10 FMN 903 A 1 HETATM 19 C C1' FMN . . . E 4 -15.055 8.262 -49.283 1 54.71 ? C1' FMN 903 A 1 HETATM 20 C C2' FMN . . . E 4 -14.307 9.521 -49.742 1 48.57 ? C2' FMN 903 A 1 HETATM 21 O O2' FMN . . . E 4 -13.498 9.218 -50.842 1 47.2 ? O2' FMN 903 A 1 HETATM 22 C C3' FMN . . . E 4 -13.452 10.043 -48.583 1 46.98 ? C3' FMN 903 A 1 HETATM 23 O O3' FMN . . . E 4 -14.277 10.636 -47.619 1 48.79 ? O3' FMN 903 A 1 HETATM 24 C C4' FMN . . . E 4 -12.409 11.055 -49.07 1 44.44 ? C4' FMN 903 A 1 HETATM 25 O O4' FMN . . . E 4 -11.55 11.382 -48.013 1 43.4 ? O4' FMN 903 A 1 HETATM 26 C C5' FMN . . . E 4 -13.064 12.34 -49.582 1 42.05 ? C5' FMN 903 A 1 HETATM 27 O O5' FMN . . . E 4 -12.05 13.265 -49.873 1 41.64 ? O5' FMN 903 A 1 HETATM 28 P P FMN . . . E 4 -12.399 14.876 -49.995 1 43.29 ? P FMN 903 A 1 HETATM 29 O O1P FMN . . . E 4 -11.23 15.596 -50.624 1 44.73 ? O1P FMN 903 A 1 HETATM 30 O O2P FMN . . . E 4 -12.652 15.443 -48.619 1 44.91 ? O2P FMN 903 A 1 HETATM 31 O O3P FMN . . . E 4 -13.619 15.081 -50.86 1 46.76 ? O3P FMN 903 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #