data_6J7F # _model_server_result.job_id 2lO3BhXh5e3QMgrrXtQc_Q _model_server_result.datetime_utc '2024-11-04 23:04:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 6J7F # _exptl.entry_id 6J7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.367 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description FARNESYL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J7F _cell.length_a 119.415 _cell.length_b 119.415 _cell.length_c 210.649 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C1 FAR . B FAR 402 1_555 C SG CMT 195 C CMT 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale2 F C1 GER . B GER 403 1_555 C SG CYS 194 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? covale ? covale3 C C CYS 194 C CYS 194 1_555 C N CMT 195 C CMT 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C15 H26' _chem_comp.formula_weight 206.367 _chem_comp.id FAR _chem_comp.mon_nstd_flag . _chem_comp.name FARNESYL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FAR sing 107 n n C1 H11 FAR sing 108 n n C1 H12A FAR sing 109 n n C1 H13 FAR sing 110 n n C2 C3 FAR doub 111 e n C2 H2 FAR sing 112 n n C3 C5 FAR sing 113 n n C3 C4 FAR sing 114 n n C5 C6 FAR sing 115 n n C5 H51 FAR sing 116 n n C5 H52 FAR sing 117 n n C6 C7 FAR sing 118 n n C6 H61 FAR sing 119 n n C6 H62 FAR sing 120 n n C7 C8 FAR doub 121 e n C7 H7 FAR sing 122 n n C8 C9 FAR sing 123 n n C8 C10 FAR sing 124 n n C9 C11 FAR sing 125 n n C9 H91 FAR sing 126 n n C9 H92 FAR sing 127 n n C11 C12 FAR sing 128 n n C11 H111 FAR sing 129 n n C11 H112 FAR sing 130 n n C12 C13 FAR doub 131 n n C12 H12 FAR sing 132 n n C13 C14 FAR sing 133 n n C13 C15 FAR sing 134 n n C14 H141 FAR sing 135 n n C14 H142 FAR sing 136 n n C14 H143 FAR sing 137 n n C15 H151 FAR sing 138 n n C15 H152 FAR sing 139 n n C15 H153 FAR sing 140 n n C4 H41 FAR sing 141 n n C4 H42 FAR sing 142 n n C4 H43 FAR sing 143 n n C10 H101 FAR sing 144 n n C10 H102 FAR sing 145 n n C10 H103 FAR sing 146 n n # _atom_sites.entry_id 6J7F _atom_sites.fract_transf_matrix[1][1] 0.008374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TLA B 1 401 401 TLA TLA . E 5 FAR B 1 402 402 FAR FAR . F 6 GER B 1 403 501 GER GER . G 7 DPO B 1 404 502 DPO DPO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FAR . . . E 5 -34.74 -2.133 24.123 1 89.31 ? C1 FAR 402 B 1 HETATM 2 C C2 FAR . . . E 5 -33.814 -2.778 23.103 1 80.54 ? C2 FAR 402 B 1 HETATM 3 C C3 FAR . . . E 5 -32.734 -2.115 22.631 1 65.32 ? C3 FAR 402 B 1 HETATM 4 C C5 FAR . . . E 5 -31.822 -2.765 21.612 1 54.3 ? C5 FAR 402 B 1 HETATM 5 C C6 FAR . . . E 5 -32.081 -2.225 20.221 1 60.43 ? C6 FAR 402 B 1 HETATM 6 C C7 FAR . . . E 5 -31.244 -0.984 19.96 1 59.82 ? C7 FAR 402 B 1 HETATM 7 C C8 FAR . . . E 5 -31.205 -0.412 18.735 1 62.21 ? C8 FAR 402 B 1 HETATM 8 C C9 FAR . . . E 5 -30.364 0.825 18.516 1 53.23 ? C9 FAR 402 B 1 HETATM 9 C C11 FAR . . . E 5 -29.317 0.572 17.454 1 54.04 ? C11 FAR 402 B 1 HETATM 10 C C12 FAR . . . E 5 -29.197 1.788 16.559 1 51.51 ? C12 FAR 402 B 1 HETATM 11 C C13 FAR . . . E 5 -28.249 2.727 16.77 1 67.27 ? C13 FAR 402 B 1 HETATM 12 C C14 FAR . . . E 5 -28.161 3.927 15.854 1 50.31 ? C14 FAR 402 B 1 HETATM 13 C C15 FAR . . . E 5 -27.27 2.588 17.916 1 66.76 ? C15 FAR 402 B 1 HETATM 14 C C4 FAR . . . E 5 -32.421 -0.723 23.139 1 66.9 ? C4 FAR 402 B 1 HETATM 15 C C10 FAR . . . E 5 -31.996 -1.006 17.589 1 30.39 ? C10 FAR 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #