data_6J7F # _model_server_result.job_id ZXcbxG85OmfJmhh5RzoiOA _model_server_result.datetime_utc '2024-11-04 23:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 6J7F # _exptl.entry_id 6J7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.484 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERAN-8-YL GERAN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J7F _cell.length_a 119.415 _cell.length_b 119.415 _cell.length_c 210.649 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C1 FAR . B FAR 402 1_555 C SG CMT 195 C CMT 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale2 F C1 GER . B GER 403 1_555 C SG CYS 194 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? covale ? covale3 C C CYS 194 C CYS 194 1_555 C N CMT 195 C CMT 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C20 H34' _chem_comp.formula_weight 274.484 _chem_comp.id GER _chem_comp.mon_nstd_flag . _chem_comp.name 'GERAN-8-YL GERAN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GER sing 147 n n C1 H11 GER sing 148 n n C1 H12 GER sing 149 n n C1 H13 GER sing 150 n n C2 C3 GER doub 151 e n C2 H21 GER sing 152 n n C3 C4 GER sing 153 n n C3 C5 GER sing 154 n n C4 H41 GER sing 155 n n C4 H42 GER sing 156 n n C4 H43 GER sing 157 n n C5 C6 GER sing 158 n n C5 H51 GER sing 159 n n C5 H52 GER sing 160 n n C6 C7 GER sing 161 n n C6 H61 GER sing 162 n n C6 H62 GER sing 163 n n C7 C8 GER doub 164 e n C7 H71 GER sing 165 n n C8 C9 GER sing 166 n n C8 C10 GER sing 167 n n C9 H91 GER sing 168 n n C9 H92 GER sing 169 n n C9 H93 GER sing 170 n n C10 C11 GER sing 171 n n C10 H101 GER sing 172 n n C10 H102 GER sing 173 n n C11 C12 GER sing 174 n n C11 H111 GER sing 175 n n C11 H112 GER sing 176 n n C12 C13 GER doub 177 e n C12 H121 GER sing 178 n n C13 C14 GER sing 179 n n C13 C15 GER sing 180 n n C14 H141 GER sing 181 n n C14 H142 GER sing 182 n n C14 H143 GER sing 183 n n C15 C16 GER sing 184 n n C15 H151 GER sing 185 n n C15 H152 GER sing 186 n n C16 C17 GER sing 187 n n C16 H161 GER sing 188 n n C16 H162 GER sing 189 n n C17 C18 GER doub 190 n n C17 H171 GER sing 191 n n C18 C19 GER sing 192 n n C18 C20 GER sing 193 n n C19 H191 GER sing 194 n n C19 H192 GER sing 195 n n C19 H193 GER sing 196 n n C20 H201 GER sing 197 n n C20 H202 GER sing 198 n n C20 H203 GER sing 199 n n # _atom_sites.entry_id 6J7F _atom_sites.fract_transf_matrix[1][1] 0.008374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TLA B 1 401 401 TLA TLA . E 5 FAR B 1 402 402 FAR FAR . F 6 GER B 1 403 501 GER GER . G 7 DPO B 1 404 502 DPO DPO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GER . . . F 6 -40.542 -1.107 31.783 1 100.89 ? C1 GER 403 B 1 HETATM 2 C C2 GER . . . F 6 -40.982 0.096 30.981 1 75.53 ? C2 GER 403 B 1 HETATM 3 C C3 GER . . . F 6 -41.711 -0.065 29.86 1 82.85 ? C3 GER 403 B 1 HETATM 4 C C4 GER . . . F 6 -42.1 -1.451 29.391 1 107.31 ? C4 GER 403 B 1 HETATM 5 C C5 GER . . . F 6 -42.14 1.148 29.069 1 76.76 ? C5 GER 403 B 1 HETATM 6 C C6 GER . . . F 6 -42.88 2.098 29.984 1 57.37 ? C6 GER 403 B 1 HETATM 7 C C7 GER . . . F 6 -43.245 3.34 29.202 1 42.34 ? C7 GER 403 B 1 HETATM 8 C C8 GER . . . F 6 -44.487 3.489 28.701 1 41.63 ? C8 GER 403 B 1 HETATM 9 C C9 GER . . . F 6 -45.541 2.424 28.922 1 28.46 ? C9 GER 403 B 1 HETATM 10 C C10 GER . . . F 6 -44.826 4.738 27.92 1 48.97 ? C10 GER 403 B 1 HETATM 11 C C11 GER . . . F 6 -44.455 4.536 26.468 1 40.76 ? C11 GER 403 B 1 HETATM 12 C C12 GER . . . F 6 -44.229 5.887 25.826 1 43.63 ? C12 GER 403 B 1 HETATM 13 C C13 GER . . . F 6 -44.068 5.995 24.493 1 32.22 ? C13 GER 403 B 1 HETATM 14 C C14 GER . . . F 6 -44.11 4.76 23.62 1 28.83 ? C14 GER 403 B 1 HETATM 15 C C15 GER . . . F 6 -43.845 7.356 23.872 1 20.19 ? C15 GER 403 B 1 HETATM 16 C C16 GER . . . F 6 -42.502 7.375 23.177 1 34.79 ? C16 GER 403 B 1 HETATM 17 C C17 GER . . . F 6 -41.399 7.501 24.205 1 29.99 ? C17 GER 403 B 1 HETATM 18 C C18 GER . . . F 6 -40.809 8.692 24.439 1 33.09 ? C18 GER 403 B 1 HETATM 19 C C19 GER . . . F 6 -41.242 9.924 23.673 1 18.24 ? C19 GER 403 B 1 HETATM 20 C C20 GER . . . F 6 -39.707 8.796 25.47 1 21.83 ? C20 GER 403 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #