data_6J86 # _model_server_result.job_id BYx9fRidlhrq87hla74SCQ _model_server_result.datetime_utc '2024-10-15 13:20:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6J86 # _exptl.entry_id 6J86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.96 _cell.angle_gamma 90 _cell.entry_id 6J86 _cell.length_a 49.32 _cell.length_b 152.578 _cell.length_c 56.336 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 367 A CYS 347 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 G O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc3 B SG CYS 367 B CYS 347 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc4 E FE HEM . B HEM 501 1_555 F OAP B9L . B B9L 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 182 n n CHA C4D HEM doub 183 n n CHA HHA HEM sing 184 n n CHB C4A HEM sing 185 n n CHB C1B HEM doub 186 n n CHB HHB HEM sing 187 n n CHC C4B HEM sing 188 n n CHC C1C HEM doub 189 n n CHC HHC HEM sing 190 n n CHD C4C HEM doub 191 n n CHD C1D HEM sing 192 n n CHD HHD HEM sing 193 n n C1A C2A HEM doub 194 n y C1A NA HEM sing 195 n y C2A C3A HEM sing 196 n y C2A CAA HEM sing 197 n n C3A C4A HEM doub 198 n y C3A CMA HEM sing 199 n n C4A NA HEM sing 200 n y CMA HMA HEM sing 201 n n CMA HMAA HEM sing 202 n n CMA HMAB HEM sing 203 n n CAA CBA HEM sing 204 n n CAA HAA HEM sing 205 n n CAA HAAA HEM sing 206 n n CBA CGA HEM sing 207 n n CBA HBA HEM sing 208 n n CBA HBAA HEM sing 209 n n CGA O1A HEM doub 210 n n CGA O2A HEM sing 211 n n C1B C2B HEM sing 212 n n C1B NB HEM sing 213 n n C2B C3B HEM doub 214 n n C2B CMB HEM sing 215 n n C3B C4B HEM sing 216 n n C3B CAB HEM sing 217 n n C4B NB HEM doub 218 n n CMB HMB HEM sing 219 n n CMB HMBA HEM sing 220 n n CMB HMBB HEM sing 221 n n CAB CBB HEM doub 222 n n CAB HAB HEM sing 223 n n CBB HBB HEM sing 224 n n CBB HBBA HEM sing 225 n n C1C C2C HEM sing 226 n y C1C NC HEM sing 227 n y C2C C3C HEM doub 228 n y C2C CMC HEM sing 229 n n C3C C4C HEM sing 230 n y C3C CAC HEM sing 231 n n C4C NC HEM sing 232 n y CMC HMC HEM sing 233 n n CMC HMCA HEM sing 234 n n CMC HMCB HEM sing 235 n n CAC CBC HEM doub 236 n n CAC HAC HEM sing 237 n n CBC HBC HEM sing 238 n n CBC HBCA HEM sing 239 n n C1D C2D HEM sing 240 n n C1D ND HEM doub 241 n n C2D C3D HEM doub 242 n n C2D CMD HEM sing 243 n n C3D C4D HEM sing 244 n n C3D CAD HEM sing 245 n n C4D ND HEM sing 246 n n CMD HMD HEM sing 247 n n CMD HMDA HEM sing 248 n n CMD HMDB HEM sing 249 n n CAD CBD HEM sing 250 n n CAD HAD HEM sing 251 n n CAD HADA HEM sing 252 n n CBD CGD HEM sing 253 n n CBD HBD HEM sing 254 n n CBD HBDA HEM sing 255 n n CGD O1D HEM doub 256 n n CGD O2D HEM sing 257 n n O2A H2A HEM sing 258 n n O2D H2D HEM sing 259 n n FE NA HEM sing 260 n n FE NB HEM sing 261 n n FE NC HEM sing 262 n n FE ND HEM sing 263 n n # _atom_sites.entry_id 6J86 _atom_sites.fract_transf_matrix[1][1] 0.020276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009871 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 401 HEM HEM . D 3 B9L A 1 502 2 B9L DRG . E 2 HEM B 1 501 401 HEM HEM . F 3 B9L B 1 502 1 B9L DRG . G 4 HOH A 1 601 67 HOH HOH . G 4 HOH A 2 602 81 HOH HOH . G 4 HOH A 3 603 63 HOH HOH . G 4 HOH A 4 604 25 HOH HOH . G 4 HOH A 5 605 122 HOH HOH . G 4 HOH A 6 606 61 HOH HOH . G 4 HOH A 7 607 30 HOH HOH . G 4 HOH A 8 608 94 HOH HOH . G 4 HOH A 9 609 32 HOH HOH . G 4 HOH A 10 610 21 HOH HOH . G 4 HOH A 11 611 62 HOH HOH . G 4 HOH A 12 612 85 HOH HOH . G 4 HOH A 13 613 100 HOH HOH . G 4 HOH A 14 614 15 HOH HOH . G 4 HOH A 15 615 82 HOH HOH . G 4 HOH A 16 616 7 HOH HOH . G 4 HOH A 17 617 40 HOH HOH . G 4 HOH A 18 618 127 HOH HOH . G 4 HOH A 19 619 87 HOH HOH . G 4 HOH A 20 620 34 HOH HOH . G 4 HOH A 21 621 39 HOH HOH . G 4 HOH A 22 622 38 HOH HOH . G 4 HOH A 23 623 112 HOH HOH . G 4 HOH A 24 624 70 HOH HOH . G 4 HOH A 25 625 44 HOH HOH . G 4 HOH A 26 626 60 HOH HOH . G 4 HOH A 27 627 37 HOH HOH . G 4 HOH A 28 628 93 HOH HOH . G 4 HOH A 29 629 46 HOH HOH . G 4 HOH A 30 630 111 HOH HOH . G 4 HOH A 31 631 51 HOH HOH . G 4 HOH A 32 632 35 HOH HOH . G 4 HOH A 33 633 75 HOH HOH . G 4 HOH A 34 634 53 HOH HOH . G 4 HOH A 35 635 84 HOH HOH . G 4 HOH A 36 636 28 HOH HOH . G 4 HOH A 37 637 47 HOH HOH . G 4 HOH A 38 638 77 HOH HOH . G 4 HOH A 39 639 74 HOH HOH . G 4 HOH A 40 640 92 HOH HOH . G 4 HOH A 41 641 64 HOH HOH . G 4 HOH A 42 642 8 HOH HOH . G 4 HOH A 43 643 79 HOH HOH . G 4 HOH A 44 644 90 HOH HOH . G 4 HOH A 45 645 11 HOH HOH . G 4 HOH A 46 646 107 HOH HOH . G 4 HOH A 47 647 68 HOH HOH . G 4 HOH A 48 648 50 HOH HOH . H 4 HOH B 1 601 17 HOH HOH . H 4 HOH B 2 602 14 HOH HOH . H 4 HOH B 3 603 41 HOH HOH . H 4 HOH B 4 604 26 HOH HOH . H 4 HOH B 5 605 118 HOH HOH . H 4 HOH B 6 606 66 HOH HOH . H 4 HOH B 7 607 88 HOH HOH . H 4 HOH B 8 608 116 HOH HOH . H 4 HOH B 9 609 18 HOH HOH . H 4 HOH B 10 610 125 HOH HOH . H 4 HOH B 11 611 55 HOH HOH . H 4 HOH B 12 612 23 HOH HOH . H 4 HOH B 13 613 86 HOH HOH . H 4 HOH B 14 614 119 HOH HOH . H 4 HOH B 15 615 115 HOH HOH . H 4 HOH B 16 616 48 HOH HOH . H 4 HOH B 17 617 24 HOH HOH . H 4 HOH B 18 618 96 HOH HOH . H 4 HOH B 19 619 71 HOH HOH . H 4 HOH B 20 620 80 HOH HOH . H 4 HOH B 21 621 117 HOH HOH . H 4 HOH B 22 622 49 HOH HOH . H 4 HOH B 23 623 91 HOH HOH . H 4 HOH B 24 624 31 HOH HOH . H 4 HOH B 25 625 9 HOH HOH . H 4 HOH B 26 626 120 HOH HOH . H 4 HOH B 27 627 57 HOH HOH . H 4 HOH B 28 628 16 HOH HOH . H 4 HOH B 29 629 27 HOH HOH . H 4 HOH B 30 630 45 HOH HOH . H 4 HOH B 31 631 33 HOH HOH . H 4 HOH B 32 632 76 HOH HOH . H 4 HOH B 33 633 89 HOH HOH . H 4 HOH B 34 634 114 HOH HOH . H 4 HOH B 35 635 13 HOH HOH . H 4 HOH B 36 636 128 HOH HOH . H 4 HOH B 37 637 95 HOH HOH . H 4 HOH B 38 638 108 HOH HOH . H 4 HOH B 39 639 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -23.093 17.623 -3.548 1 16.7 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . E 2 -25.122 20.465 -0.137 1 17.5 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . E 2 -21.221 23.452 -0.446 1 21.98 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . E 2 -19.652 20.964 -4.323 1 18.64 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . E 2 -23.988 18.134 -2.629 1 18.39 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . E 2 -25.305 17.622 -2.358 1 15.29 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . E 2 -25.882 18.387 -1.414 1 17.76 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . E 2 -24.947 19.441 -1.056 1 17.09 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . E 2 -27.301 18.19 -0.815 1 17.84 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . E 2 -25.873 16.371 -3.051 1 18.97 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . E 2 -27.16 16.592 -3.852 1 20.64 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . E 2 -27.681 15.224 -4.225 1 17.36 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . E 2 -28.726 15.12 -4.907 1 18.79 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . E 2 -27.051 14.211 -3.823 1 19.88 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . E 2 -24.218 21.497 0.091 1 19.52 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . E 2 -24.32 22.502 1.122 1 19.81 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . E 2 -23.254 23.328 1.01 1 18.4 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . E 2 -22.417 22.87 -0.06 1 18.96 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . E 2 -25.504 22.557 2.112 1 20.3 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . E 2 -22.84 24.558 1.834 1 21.96 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . E 2 -23.358 24.861 3.017 1 20 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . E 2 -20.391 23.002 -1.471 1 24.62 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . E 2 -19.043 23.453 -1.816 1 19.5 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . E 2 -18.631 22.728 -2.877 1 17.31 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . E 2 -19.688 21.825 -3.248 1 19.51 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . E 2 -18.256 24.54 -1.05 1 17.46 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . E 2 -17.333 22.783 -3.709 1 16.79 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . E 2 -16.638 23.913 -3.881 1 18.35 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . E 2 -20.458 19.875 -4.48 1 18.23 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . E 2 -20.37 18.916 -5.55 1 19.79 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . E 2 -21.314 17.995 -5.338 1 19.54 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . E 2 -22.043 18.329 -4.119 1 20.9 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . E 2 -19.365 18.966 -6.725 1 18.98 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . E 2 -21.569 16.776 -6.23 1 16.58 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . E 2 -20.643 15.703 -5.696 1 15.24 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . E 2 -20.845 14.422 -6.447 1 19 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . E 2 -21.729 14.385 -7.352 1 18.48 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . E 2 -20.119 13.445 -6.117 1 19.22 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . E 2 -23.805 19.25 -1.823 1 20.87 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . E 2 -23.039 21.76 -0.605 1 20.88 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . E 2 -20.741 22.008 -2.372 1 20.11 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . E 2 -21.483 19.497 -3.625 1 21.33 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . E 2 -22.226 20.67 -2.055 1 18.33 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #