data_6J8E # _model_server_result.job_id 2UbndH4R_jxmCufKkbegaw _model_server_result.datetime_utc '2024-11-22 12:14:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2109}' # _entry.id 6J8E # _exptl.entry_id 6J8E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J8E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 1901 NAG 4 n D NAG 2 B 2 NAG A 1902 NAG 4 n D BMA 3 B 3 BMA A 1903 BMA 5 n E NAG 1 E 1 NAG A 1904 NAG 5 n E NAG 2 E 2 NAG A 1905 NAG 5 n F NAG 1 F 1 NAG A 1907 NAG 5 n F NAG 2 F 2 NAG A 1908 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 C CYS 50 1_555 A SG CYS 101 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? disulf ? disulf2 A SG CYS 29 C CYS 55 1_555 B SG CYS 953 A CYS 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf3 A SG CYS 46 C CYS 72 1_555 A SG CYS 49 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 321 A CYS 278 1_555 B SG CYS 381 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 955 A CYS 912 1_555 B SG CYS 961 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 993 A CYS 950 1_555 B SG CYS 1002 A CYS 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 B SG CYS 1409 A CYS 1366 1_555 B SG CYS 1429 A CYS 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf8 B SG CYS 1774 A CYS 1731 1_555 B SG CYS 1789 A CYS 1746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 1 D CYS 1 1_555 C SG CYS 15 D CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 C SG CYS 2 D CYS 2 1_555 C SG CYS 9 D CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 C SG CYS 4 D CYS 4 1_555 C SG CYS 16 D CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B ND2 ASN 383 A ASN 340 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B ND2 ASN 1411 A ASN 1368 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale3 B ND2 ASN 1425 A ASN 1382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 B ND2 ASN 1436 A ASN 1393 1_555 G C1 NAG . A NAG 2106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale6 D O4 NAG . B NAG 2 1_555 D C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? metalc ? metalc1 B OD1 ASP 427 A ASP 384 1_555 I NA NA . A NA 2110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc2 B OE1 GLU 985 A GLU 942 1_555 I NA NA . A NA 2110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 1 n n O25 C24 9Z9 sing 2 n n C50 O49 9Z9 sing 3 n n O49 C48 9Z9 sing 4 n n C24 C23 9Z9 sing 5 n n C48 C23 9Z9 sing 6 n n C23 C22 9Z9 sing 7 n n C22 C21 9Z9 sing 8 n n C21 O20 9Z9 sing 9 n n O20 C17 9Z9 sing 10 n n C17 C18 9Z9 sing 11 n n C17 C16 9Z9 sing 12 n n C18 C19 9Z9 sing 13 n n C16 C13 9Z9 sing 14 n n C19 C11 9Z9 sing 15 n n C13 C11 9Z9 sing 16 n n C13 C14 9Z9 doub 17 n n C11 C12 9Z9 sing 18 n n C11 C08 9Z9 sing 19 n n C14 C15 9Z9 sing 20 n n C08 C09 9Z9 sing 21 n n C08 C07 9Z9 sing 22 n n C15 C07 9Z9 sing 23 n n C09 C10 9Z9 sing 24 n n C07 C06 9Z9 sing 25 n n C10 C02 9Z9 sing 26 n n C06 C02 9Z9 sing 27 n n C06 C05 9Z9 sing 28 n n C02 C01 9Z9 sing 29 n n C02 C03 9Z9 sing 30 n n C05 C04 9Z9 sing 31 n n C03 C04 9Z9 sing 32 n n C03 C74 9Z9 sing 33 n n C04 O72 9Z9 sing 34 n n C74 C75 9Z9 sing 35 n n C74 C73 9Z9 sing 36 n n O72 C73 9Z9 sing 37 n n C73 O80 9Z9 sing 38 n n C73 C76 9Z9 sing 39 n n O80 C79 9Z9 sing 40 n n C76 C77 9Z9 sing 41 n n C79 C78 9Z9 sing 42 n n C77 C78 9Z9 sing 43 n n C78 C81 9Z9 sing 44 n n C01 H1 9Z9 sing 45 n n C01 H2 9Z9 sing 46 n n C01 H3 9Z9 sing 47 n n C03 H4 9Z9 sing 48 n n C04 H5 9Z9 sing 49 n n C05 H6 9Z9 sing 50 n n C05 H7 9Z9 sing 51 n n C06 H8 9Z9 sing 52 n n C07 H9 9Z9 sing 53 n n C08 H10 9Z9 sing 54 n n C09 H11 9Z9 sing 55 n n C09 H12 9Z9 sing 56 n n C10 H13 9Z9 sing 57 n n C10 H14 9Z9 sing 58 n n C12 H15 9Z9 sing 59 n n C12 H16 9Z9 sing 60 n n C12 H17 9Z9 sing 61 n n C14 H18 9Z9 sing 62 n n C15 H19 9Z9 sing 63 n n C15 H20 9Z9 sing 64 n n C16 H21 9Z9 sing 65 n n C16 H22 9Z9 sing 66 n n C17 H23 9Z9 sing 67 n n C18 H24 9Z9 sing 68 n n C18 H25 9Z9 sing 69 n n C19 H26 9Z9 sing 70 n n C19 H27 9Z9 sing 71 n n C21 H28 9Z9 sing 72 n n C21 H29 9Z9 sing 73 n n C22 H30 9Z9 sing 74 n n C22 H31 9Z9 sing 75 n n C23 H32 9Z9 sing 76 n n C24 H33 9Z9 sing 77 n n C24 H34 9Z9 sing 78 n n C26 H35 9Z9 sing 79 n n C26 H36 9Z9 sing 80 n n C26 H37 9Z9 sing 81 n n C48 H38 9Z9 sing 82 n n C48 H39 9Z9 sing 83 n n C50 H40 9Z9 sing 84 n n C50 H41 9Z9 sing 85 n n C50 H42 9Z9 sing 86 n n C74 H43 9Z9 sing 87 n n C75 H44 9Z9 sing 88 n n C75 H45 9Z9 sing 89 n n C75 H46 9Z9 sing 90 n n C76 H47 9Z9 sing 91 n n C76 H48 9Z9 sing 92 n n C77 H49 9Z9 sing 93 n n C77 H50 9Z9 sing 94 n n C78 H51 9Z9 sing 95 n n C79 H52 9Z9 sing 96 n n C79 H53 9Z9 sing 97 n n C81 H54 9Z9 sing 98 n n C81 H55 9Z9 sing 99 n n C81 H56 9Z9 sing 100 n n # _atom_sites.entry_id 6J8E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 NAG A 1 2106 1906 NAG NAG . H 7 9Z9 A 1 2109 1915 9Z9 9Z9 . I 8 NA A 1 2110 2 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . H 7 127.44 131.464 125.069 1 20 ? C01 9Z9 2109 A 1 HETATM 2 C C02 9Z9 . . . H 7 128.629 130.661 124.512 1 20 ? C02 9Z9 2109 A 1 HETATM 3 C C03 9Z9 . . . H 7 129.322 129.8 125.589 1 20 ? C03 9Z9 2109 A 1 HETATM 4 C C04 9Z9 . . . H 7 128.552 128.474 125.56 1 20 ? C04 9Z9 2109 A 1 HETATM 5 C C05 9Z9 . . . H 7 127.549 128.517 124.411 1 20 ? C05 9Z9 2109 A 1 HETATM 6 C C06 9Z9 . . . H 7 128.231 129.551 123.518 1 20 ? C06 9Z9 2109 A 1 HETATM 7 C C07 9Z9 . . . H 7 127.501 130.031 122.263 1 20 ? C07 9Z9 2109 A 1 HETATM 8 C C08 9Z9 . . . H 7 128.36 131.09 121.553 1 20 ? C08 9Z9 2109 A 1 HETATM 9 C C09 9Z9 . . . H 7 128.843 132.178 122.53 1 20 ? C09 9Z9 2109 A 1 HETATM 10 C C10 9Z9 . . . H 7 129.567 131.607 123.758 1 20 ? C10 9Z9 2109 A 1 HETATM 11 C C11 9Z9 . . . H 7 127.651 131.65 120.294 1 20 ? C11 9Z9 2109 A 1 HETATM 12 C C12 9Z9 . . . H 7 126.527 132.625 120.688 1 20 ? C12 9Z9 2109 A 1 HETATM 13 C C13 9Z9 . . . H 7 127.054 130.529 119.459 1 20 ? C13 9Z9 2109 A 1 HETATM 14 C C14 9Z9 . . . H 7 126.79 129.314 119.963 1 20 ? C14 9Z9 2109 A 1 HETATM 15 C C15 9Z9 . . . H 7 127.245 128.854 121.315 1 20 ? C15 9Z9 2109 A 1 HETATM 16 C C16 9Z9 . . . H 7 126.606 130.885 118.056 1 20 ? C16 9Z9 2109 A 1 HETATM 17 C C17 9Z9 . . . H 7 127.741 131.538 117.277 1 20 ? C17 9Z9 2109 A 1 HETATM 18 C C18 9Z9 . . . H 7 128.202 132.777 118.035 1 20 ? C18 9Z9 2109 A 1 HETATM 19 C C19 9Z9 . . . H 7 128.698 132.378 119.429 1 20 ? C19 9Z9 2109 A 1 HETATM 20 O O20 9Z9 . . . H 7 127.273 131.854 115.997 1 20 ? O20 9Z9 2109 A 1 HETATM 21 C C21 9Z9 . . . H 7 127.365 130.786 115.095 1 20 ? C21 9Z9 2109 A 1 HETATM 22 C C22 9Z9 . . . H 7 125.972 130.456 114.564 1 20 ? C22 9Z9 2109 A 1 HETATM 23 C C23 9Z9 . . . H 7 125.955 130.147 113.052 1 20 ? C23 9Z9 2109 A 1 HETATM 24 C C24 9Z9 . . . H 7 127.238 129.459 112.569 1 20 ? C24 9Z9 2109 A 1 HETATM 25 O O25 9Z9 . . . H 7 127.801 130.213 111.521 1 20 ? O25 9Z9 2109 A 1 HETATM 26 C C26 9Z9 . . . H 7 129.174 130.476 111.687 1 20 ? C26 9Z9 2109 A 1 HETATM 27 C C48 9Z9 . . . H 7 124.731 129.291 112.703 1 20 ? C48 9Z9 2109 A 1 HETATM 28 O O49 9Z9 . . . H 7 123.887 130.051 111.88 1 20 ? O49 9Z9 2109 A 1 HETATM 29 C C50 9Z9 . . . H 7 122.644 129.457 111.602 1 20 ? C50 9Z9 2109 A 1 HETATM 30 O O72 9Z9 . . . H 7 127.941 128.352 126.802 1 20 ? O72 9Z9 2109 A 1 HETATM 31 C C73 9Z9 . . . H 7 128.815 128.914 127.748 1 20 ? C73 9Z9 2109 A 1 HETATM 32 C C74 9Z9 . . . H 7 129.269 130.204 127.068 1 20 ? C74 9Z9 2109 A 1 HETATM 33 C C75 9Z9 . . . H 7 130.563 130.835 127.59 1 20 ? C75 9Z9 2109 A 1 HETATM 34 C C76 9Z9 . . . H 7 128.024 129.171 129.026 1 20 ? C76 9Z9 2109 A 1 HETATM 35 C C77 9Z9 . . . H 7 128.195 127.997 129.999 1 20 ? C77 9Z9 2109 A 1 HETATM 36 C C78 9Z9 . . . H 7 129.676 127.683 130.284 1 20 ? C78 9Z9 2109 A 1 HETATM 37 C C79 9Z9 . . . H 7 130.574 127.91 129.072 1 20 ? C79 9Z9 2109 A 1 HETATM 38 O O80 9Z9 . . . H 7 129.854 127.96 127.868 1 20 ? O80 9Z9 2109 A 1 HETATM 39 C C81 9Z9 . . . H 7 129.857 126.257 130.822 1 20 ? C81 9Z9 2109 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #