data_6J8H # _model_server_result.job_id pNceBVZ8HYnsX9RirMWFPg _model_server_result.datetime_utc '2024-11-16 06:26:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2007}' # _entry.id 6J8H # _exptl.entry_id 6J8H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 299.286 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J8H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 1901 NAG 4 n D NAG 2 D 2 NAG A 1902 NAG 4 n E NAG 1 E 1 NAG A 1903 NAG 4 n E NAG 2 E 2 NAG A 1904 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 C CYS 50 1_555 A SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? disulf ? disulf2 A SG CYS 55 C CYS 55 1_555 B SG CYS 938 A CYS 895 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? disulf ? disulf3 A SG CYS 72 C CYS 72 1_555 A SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 318 A CYS 275 1_555 B SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? disulf ? disulf5 B SG CYS 940 A CYS 897 1_555 B SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? disulf ? disulf6 B SG CYS 978 A CYS 935 1_555 B SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf7 B SG CYS 1393 A CYS 1350 1_555 B SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? disulf ? disulf8 B SG CYS 1758 A CYS 1715 1_555 B SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf9 C SG CYS 21 B CYS 21 1_555 C SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? disulf ? disulf10 C SG CYS 40 B CYS 40 1_555 C SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale1 A ND2 ASN 66 C ASN 66 1_555 F C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale2 B ND2 ASN 326 A ASN 283 1_555 H C1 NAG . A NAG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale3 B ND2 ASN 1395 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale4 B ND2 ASN 1409 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale5 B ND2 ASN 1418 A ASN 1375 1_555 G C1 NAG . A NAG 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale6 C ND2 ASN 93 B ASN 93 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale7 C ND2 ASN 110 B ASN 110 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? covale ? covale8 C ND2 ASN 114 B ASN 114 1_555 L C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 C ND2 ASN 135 B ASN 135 1_555 M C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C10 H17 N7 O4' _chem_comp.formula_weight 299.286 _chem_comp.id 9SL _chem_comp.mon_nstd_flag . _chem_comp.name '[(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Saxitoxin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N13 C12 9SL sing 1 n n N13 C14 9SL sing 2 n n N15 C12 9SL sing 3 n n C04 C05 9SL sing 4 n n C04 O03 9SL sing 5 n n C12 N11 9SL doub 6 n n C14 C05 9SL sing 7 n n C14 C10 9SL sing 8 n n O01 C02 9SL doub 9 n n C05 N06 9SL sing 10 n n O03 C02 9SL sing 11 n n C02 N21 9SL sing 12 n n O17 C16 9SL sing 13 n n N11 C10 9SL sing 14 n n C10 C16 9SL sing 15 n n C10 N09 9SL sing 16 n n N06 C07 9SL doub 17 n n O18 C16 9SL sing 18 n n C16 C19 9SL sing 19 n n N09 C07 9SL sing 20 n n N09 C20 9SL sing 21 n n C07 N08 9SL sing 22 n n C19 C20 9SL sing 23 n n C20 H1 9SL sing 24 n n C20 H2 9SL sing 25 n n C04 H3 9SL sing 26 n n C04 H4 9SL sing 27 n n C05 H5 9SL sing 28 n n N08 H6 9SL sing 29 n n N08 H7 9SL sing 30 n n C14 H9 9SL sing 31 n n N15 H10 9SL sing 32 n n N15 H11 9SL sing 33 n n O17 H12 9SL sing 34 n n O18 H13 9SL sing 35 n n C19 H14 9SL sing 36 n n C19 H15 9SL sing 37 n n N21 H16 9SL sing 38 n n N21 H17 9SL sing 39 n n N13 H8 9SL sing 40 n n # _atom_sites.entry_id 6J8H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG C 1 301 301 NAG NAG . G 5 NAG A 1 2005 1905 NAG NAG . H 5 NAG A 1 2006 1906 NAG NAG . I 6 9SL A 1 2007 1 9SL LIG . J 5 NAG B 1 301 301 NAG NAG . K 5 NAG B 1 302 302 NAG NAG . L 5 NAG B 1 303 303 NAG NAG . M 5 NAG B 1 304 304 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9SL . . . I 6 135.413 132.286 144.386 1 26.23 ? C10 9SL 2007 A 1 HETATM 2 C C20 9SL . . . I 6 135.013 132.11 146.666 1 26.23 ? C20 9SL 2007 A 1 HETATM 3 O O01 9SL . . . I 6 139.628 132.149 143.762 1 26.23 ? O01 9SL 2007 A 1 HETATM 4 C C02 9SL . . . I 6 139.529 133.09 144.447 1 26.23 ? C02 9SL 2007 A 1 HETATM 5 O O03 9SL . . . I 6 139.134 134.315 143.917 1 26.23 ? O03 9SL 2007 A 1 HETATM 6 C C04 9SL . . . I 6 138.166 134.27 142.902 1 26.23 ? C04 9SL 2007 A 1 HETATM 7 C C05 9SL . . . I 6 136.742 134.383 143.433 1 26.23 ? C05 9SL 2007 A 1 HETATM 8 N N06 9SL . . . I 6 136.773 134.842 144.788 1 26.23 ? N06 9SL 2007 A 1 HETATM 9 C C07 9SL . . . I 6 136.258 134.154 145.823 1 26.23 ? C07 9SL 2007 A 1 HETATM 10 N N08 9SL . . . I 6 136.363 134.676 147.168 1 26.23 ? N08 9SL 2007 A 1 HETATM 11 N N09 9SL . . . I 6 135.615 132.976 145.623 1 26.23 ? N09 9SL 2007 A 1 HETATM 12 N N11 9SL . . . I 6 134.036 132.157 144.063 1 26.23 ? N11 9SL 2007 A 1 HETATM 13 C C12 9SL . . . I 6 133.82 132.683 142.67 1 26.23 ? C12 9SL 2007 A 1 HETATM 14 N N13 9SL . . . I 6 135.133 133.152 142.157 1 26.23 ? N13 9SL 2007 A 1 HETATM 15 C C14 9SL . . . I 6 136.105 132.935 143.168 1 26.23 ? C14 9SL 2007 A 1 HETATM 16 N N15 9SL . . . I 6 132.572 132.734 141.943 1 26.23 ? N15 9SL 2007 A 1 HETATM 17 C C16 9SL . . . I 6 135.911 130.905 144.786 1 26.23 ? C16 9SL 2007 A 1 HETATM 18 O O17 9SL . . . I 6 135.528 129.934 143.863 1 26.23 ? O17 9SL 2007 A 1 HETATM 19 O O18 9SL . . . I 6 137.283 130.881 144.999 1 26.23 ? O18 9SL 2007 A 1 HETATM 20 C C19 9SL . . . I 6 135.235 130.692 146.14 1 26.23 ? C19 9SL 2007 A 1 HETATM 21 N N21 9SL . . . I 6 139.828 132.955 145.85 1 26.23 ? N21 9SL 2007 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 90 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #