data_6J8I # _model_server_result.job_id YGfGy4uXWPptWDlw24cOYw _model_server_result.datetime_utc '2024-12-23 09:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":304}' # _entry.id 6J8I # _exptl.entry_id 6J8I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J8I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 1901 NAG 4 n D NAG 2 D 2 NAG A 1902 NAG 4 n E NAG 1 E 1 NAG A 1903 NAG 4 n E NAG 2 E 2 NAG A 1904 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 C CYS 50 1_555 A SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? disulf ? disulf2 A SG CYS 55 C CYS 55 1_555 B SG CYS 938 A CYS 895 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? disulf ? disulf3 A SG CYS 72 C CYS 72 1_555 A SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 318 A CYS 275 1_555 B SG CYS 358 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? disulf ? disulf5 B SG CYS 940 A CYS 897 1_555 B SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 978 A CYS 935 1_555 B SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? disulf ? disulf7 B SG CYS 1393 A CYS 1350 1_555 B SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf8 B SG CYS 1758 A CYS 1715 1_555 B SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf9 C SG CYS 21 B CYS 21 1_555 C SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf10 C SG CYS 40 B CYS 40 1_555 C SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale1 A ND2 ASN 66 C ASN 66 1_555 F C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale2 B ND2 ASN 326 A ASN 283 1_555 H C1 NAG . A NAG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale3 B ND2 ASN 1395 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale4 B ND2 ASN 1409 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale5 B ND2 ASN 1418 A ASN 1375 1_555 G C1 NAG . A NAG 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? covale ? covale6 C ND2 ASN 93 B ASN 93 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale7 C ND2 ASN 110 B ASN 110 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale8 C ND2 ASN 114 B ASN 114 1_555 L C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? covale ? covale9 C ND2 ASN 135 B ASN 135 1_555 M C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 277 n n C1 O1 NAG sing 278 n n C1 O5 NAG sing 279 n n C1 H1 NAG sing 280 n n C2 C3 NAG sing 281 n n C2 N2 NAG sing 282 n n C2 H2 NAG sing 283 n n C3 C4 NAG sing 284 n n C3 O3 NAG sing 285 n n C3 H3 NAG sing 286 n n C4 C5 NAG sing 287 n n C4 O4 NAG sing 288 n n C4 H4 NAG sing 289 n n C5 C6 NAG sing 290 n n C5 O5 NAG sing 291 n n C5 H5 NAG sing 292 n n C6 O6 NAG sing 293 n n C6 H61 NAG sing 294 n n C6 H62 NAG sing 295 n n C7 C8 NAG sing 296 n n C7 N2 NAG sing 297 n n C7 O7 NAG doub 298 n n C8 H81 NAG sing 299 n n C8 H82 NAG sing 300 n n C8 H83 NAG sing 301 n n N2 HN2 NAG sing 302 n n O1 HO1 NAG sing 303 n n O3 HO3 NAG sing 304 n n O4 HO4 NAG sing 305 n n O6 HO6 NAG sing 306 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6J8I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG C 1 301 301 NAG NAG . G 5 NAG A 1 2005 1905 NAG NAG . H 5 NAG A 1 2006 1906 NAG NAG . I 6 9SR A 1 2007 1 9SR LIG . J 5 NAG B 1 301 301 NAG NAG . K 5 NAG B 1 302 302 NAG NAG . L 5 NAG B 1 303 303 NAG NAG . M 5 NAG B 1 304 304 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 5 127.522 121.466 183.682 1 63.14 ? C1 NAG 304 B 1 HETATM 2 C C2 NAG . . . M 5 126.894 120.129 184.101 1 63.14 ? C2 NAG 304 B 1 HETATM 3 C C3 NAG . . . M 5 127.017 119.924 185.613 1 63.14 ? C3 NAG 304 B 1 HETATM 4 C C4 NAG . . . M 5 128.45 120.138 186.084 1 63.14 ? C4 NAG 304 B 1 HETATM 5 C C5 NAG . . . M 5 128.945 121.497 185.601 1 63.14 ? C5 NAG 304 B 1 HETATM 6 C C6 NAG . . . M 5 130.378 121.789 185.974 1 63.14 ? C6 NAG 304 B 1 HETATM 7 C C7 NAG . . . M 5 124.91 118.946 183.289 1 63.14 ? C7 NAG 304 B 1 HETATM 8 C C8 NAG . . . M 5 123.472 119.065 182.892 1 63.14 ? C8 NAG 304 B 1 HETATM 9 N N2 NAG . . . M 5 125.503 120.071 183.689 1 63.14 ? N2 NAG 304 B 1 HETATM 10 O O3 NAG . . . M 5 126.596 118.608 185.945 1 63.14 ? O3 NAG 304 B 1 HETATM 11 O O4 NAG . . . M 5 128.501 120.085 187.505 1 63.14 ? O4 NAG 304 B 1 HETATM 12 O O5 NAG . . . M 5 128.864 121.546 184.171 1 63.14 ? O5 NAG 304 B 1 HETATM 13 O O6 NAG . . . M 5 130.465 122.977 186.747 1 63.14 ? O6 NAG 304 B 1 HETATM 14 O O7 NAG . . . M 5 125.509 117.879 183.248 1 63.14 ? O7 NAG 304 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #