data_6J8R # _model_server_result.job_id DHkoKQWWVgNaC3GK46ZW7w _model_server_result.datetime_utc '2024-11-13 04:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":313}' # _entry.id 6J8R # _exptl.entry_id 6J8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J8R _cell.length_a 44.893 _cell.length_b 60.984 _cell.length_c 96.338 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A ND1 HIS 85 A HIS 116 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 A OD2 ASP 87 A ASP 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 A NE2 HIS 148 A HIS 179 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A SG CYS 167 A CYS 198 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc6 A NE2 HIS 209 A HIS 240 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 D S7 BHU . A BHU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D S7 BHU . A BHU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 155 n n C1 C2 GOL sing 156 n n C1 H11 GOL sing 157 n n C1 H12 GOL sing 158 n n O1 HO1 GOL sing 159 n n C2 O2 GOL sing 160 n n C2 C3 GOL sing 161 n n C2 H2 GOL sing 162 n n O2 HO2 GOL sing 163 n n C3 O3 GOL sing 164 n n C3 H31 GOL sing 165 n n C3 H32 GOL sing 166 n n O3 HO3 GOL sing 167 n n # _atom_sites.entry_id 6J8R _atom_sites.fract_transf_matrix[1][1] 0.022275 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 BHU A 1 303 401 BHU WJM . E 4 FMT A 1 304 501 FMT FMT . F 4 FMT A 1 305 502 FMT FMT . G 4 FMT A 1 306 503 FMT FMT . H 4 FMT A 1 307 505 FMT FMT . I 4 FMT A 1 308 506 FMT FMT . J 4 FMT A 1 309 507 FMT FMT . K 4 FMT A 1 310 508 FMT FMT . L 5 GOL A 1 311 509 GOL GOL . M 5 GOL A 1 312 510 GOL GOL . N 5 GOL A 1 313 511 GOL GOL . O 6 HOH A 1 401 251 HOH HOH . O 6 HOH A 2 402 98 HOH HOH . O 6 HOH A 3 403 195 HOH HOH . O 6 HOH A 4 404 157 HOH HOH . O 6 HOH A 5 405 176 HOH HOH . O 6 HOH A 6 406 95 HOH HOH . O 6 HOH A 7 407 265 HOH HOH . O 6 HOH A 8 408 255 HOH HOH . O 6 HOH A 9 409 120 HOH HOH . O 6 HOH A 10 410 249 HOH HOH . O 6 HOH A 11 411 15 HOH HOH . O 6 HOH A 12 412 208 HOH HOH . O 6 HOH A 13 413 129 HOH HOH . O 6 HOH A 14 414 150 HOH HOH . O 6 HOH A 15 415 55 HOH HOH . O 6 HOH A 16 416 130 HOH HOH . O 6 HOH A 17 417 85 HOH HOH . O 6 HOH A 18 418 31 HOH HOH . O 6 HOH A 19 419 161 HOH HOH . O 6 HOH A 20 420 53 HOH HOH . O 6 HOH A 21 421 273 HOH HOH . O 6 HOH A 22 422 65 HOH HOH . O 6 HOH A 23 423 191 HOH HOH . O 6 HOH A 24 424 75 HOH HOH . O 6 HOH A 25 425 203 HOH HOH . O 6 HOH A 26 426 23 HOH HOH . O 6 HOH A 27 427 127 HOH HOH . O 6 HOH A 28 428 3 HOH HOH . O 6 HOH A 29 429 30 HOH HOH . O 6 HOH A 30 430 9 HOH HOH . O 6 HOH A 31 431 48 HOH HOH . O 6 HOH A 32 432 89 HOH HOH . O 6 HOH A 33 433 74 HOH HOH . O 6 HOH A 34 434 104 HOH HOH . O 6 HOH A 35 435 218 HOH HOH . O 6 HOH A 36 436 244 HOH HOH . O 6 HOH A 37 437 128 HOH HOH . O 6 HOH A 38 438 139 HOH HOH . O 6 HOH A 39 439 86 HOH HOH . O 6 HOH A 40 440 58 HOH HOH . O 6 HOH A 41 441 264 HOH HOH . O 6 HOH A 42 442 78 HOH HOH . O 6 HOH A 43 443 245 HOH HOH . O 6 HOH A 44 444 192 HOH HOH . O 6 HOH A 45 445 19 HOH HOH . O 6 HOH A 46 446 26 HOH HOH . O 6 HOH A 47 447 34 HOH HOH . O 6 HOH A 48 448 44 HOH HOH . O 6 HOH A 49 449 124 HOH HOH . O 6 HOH A 50 450 142 HOH HOH . O 6 HOH A 51 451 28 HOH HOH . O 6 HOH A 52 452 259 HOH HOH . O 6 HOH A 53 453 177 HOH HOH . O 6 HOH A 54 454 151 HOH HOH . O 6 HOH A 55 455 136 HOH HOH . O 6 HOH A 56 456 263 HOH HOH . O 6 HOH A 57 457 186 HOH HOH . O 6 HOH A 58 458 82 HOH HOH . O 6 HOH A 59 459 246 HOH HOH . O 6 HOH A 60 460 174 HOH HOH . O 6 HOH A 61 461 197 HOH HOH . O 6 HOH A 62 462 71 HOH HOH . O 6 HOH A 63 463 241 HOH HOH . O 6 HOH A 64 464 230 HOH HOH . O 6 HOH A 65 465 194 HOH HOH . O 6 HOH A 66 466 121 HOH HOH . O 6 HOH A 67 467 2 HOH HOH . O 6 HOH A 68 468 184 HOH HOH . O 6 HOH A 69 469 7 HOH HOH . O 6 HOH A 70 470 4 HOH HOH . O 6 HOH A 71 471 77 HOH HOH . O 6 HOH A 72 472 42 HOH HOH . O 6 HOH A 73 473 16 HOH HOH . O 6 HOH A 74 474 25 HOH HOH . O 6 HOH A 75 475 43 HOH HOH . O 6 HOH A 76 476 169 HOH HOH . O 6 HOH A 77 477 36 HOH HOH . O 6 HOH A 78 478 178 HOH HOH . O 6 HOH A 79 479 261 HOH HOH . O 6 HOH A 80 480 188 HOH HOH . O 6 HOH A 81 481 84 HOH HOH . O 6 HOH A 82 482 164 HOH HOH . O 6 HOH A 83 483 24 HOH HOH . O 6 HOH A 84 484 267 HOH HOH . O 6 HOH A 85 485 88 HOH HOH . O 6 HOH A 86 486 61 HOH HOH . O 6 HOH A 87 487 101 HOH HOH . O 6 HOH A 88 488 51 HOH HOH . O 6 HOH A 89 489 72 HOH HOH . O 6 HOH A 90 490 193 HOH HOH . O 6 HOH A 91 491 6 HOH HOH . O 6 HOH A 92 492 12 HOH HOH . O 6 HOH A 93 493 240 HOH HOH . O 6 HOH A 94 494 45 HOH HOH . O 6 HOH A 95 495 80 HOH HOH . O 6 HOH A 96 496 146 HOH HOH . O 6 HOH A 97 497 27 HOH HOH . O 6 HOH A 98 498 10 HOH HOH . O 6 HOH A 99 499 99 HOH HOH . O 6 HOH A 100 500 268 HOH HOH . O 6 HOH A 101 501 253 HOH HOH . O 6 HOH A 102 502 200 HOH HOH . O 6 HOH A 103 503 221 HOH HOH . O 6 HOH A 104 504 68 HOH HOH . O 6 HOH A 105 505 113 HOH HOH . O 6 HOH A 106 506 11 HOH HOH . O 6 HOH A 107 507 163 HOH HOH . O 6 HOH A 108 508 91 HOH HOH . O 6 HOH A 109 509 135 HOH HOH . O 6 HOH A 110 510 87 HOH HOH . O 6 HOH A 111 511 56 HOH HOH . O 6 HOH A 112 512 154 HOH HOH . O 6 HOH A 113 513 149 HOH HOH . O 6 HOH A 114 514 158 HOH HOH . O 6 HOH A 115 515 39 HOH HOH . O 6 HOH A 116 516 97 HOH HOH . O 6 HOH A 117 517 153 HOH HOH . O 6 HOH A 118 518 17 HOH HOH . O 6 HOH A 119 519 52 HOH HOH . O 6 HOH A 120 520 118 HOH HOH . O 6 HOH A 121 521 8 HOH HOH . O 6 HOH A 122 522 117 HOH HOH . O 6 HOH A 123 523 125 HOH HOH . O 6 HOH A 124 524 229 HOH HOH . O 6 HOH A 125 525 54 HOH HOH . O 6 HOH A 126 526 32 HOH HOH . O 6 HOH A 127 527 210 HOH HOH . O 6 HOH A 128 528 13 HOH HOH . O 6 HOH A 129 529 205 HOH HOH . O 6 HOH A 130 530 260 HOH HOH . O 6 HOH A 131 531 252 HOH HOH . O 6 HOH A 132 532 126 HOH HOH . O 6 HOH A 133 533 271 HOH HOH . O 6 HOH A 134 534 81 HOH HOH . O 6 HOH A 135 535 100 HOH HOH . O 6 HOH A 136 536 102 HOH HOH . O 6 HOH A 137 537 269 HOH HOH . O 6 HOH A 138 538 1 HOH HOH . O 6 HOH A 139 539 37 HOH HOH . O 6 HOH A 140 540 49 HOH HOH . O 6 HOH A 141 541 70 HOH HOH . O 6 HOH A 142 542 59 HOH HOH . O 6 HOH A 143 543 145 HOH HOH . O 6 HOH A 144 544 111 HOH HOH . O 6 HOH A 145 545 38 HOH HOH . O 6 HOH A 146 546 20 HOH HOH . O 6 HOH A 147 547 171 HOH HOH . O 6 HOH A 148 548 122 HOH HOH . O 6 HOH A 149 549 212 HOH HOH . O 6 HOH A 150 550 83 HOH HOH . O 6 HOH A 151 551 167 HOH HOH . O 6 HOH A 152 552 57 HOH HOH . O 6 HOH A 153 553 5 HOH HOH . O 6 HOH A 154 554 204 HOH HOH . O 6 HOH A 155 555 226 HOH HOH . O 6 HOH A 156 556 250 HOH HOH . O 6 HOH A 157 557 60 HOH HOH . O 6 HOH A 158 558 92 HOH HOH . O 6 HOH A 159 559 222 HOH HOH . O 6 HOH A 160 560 96 HOH HOH . O 6 HOH A 161 561 270 HOH HOH . O 6 HOH A 162 562 141 HOH HOH . O 6 HOH A 163 563 243 HOH HOH . O 6 HOH A 164 564 123 HOH HOH . O 6 HOH A 165 565 106 HOH HOH . O 6 HOH A 166 566 62 HOH HOH . O 6 HOH A 167 567 156 HOH HOH . O 6 HOH A 168 568 147 HOH HOH . O 6 HOH A 169 569 144 HOH HOH . O 6 HOH A 170 570 66 HOH HOH . O 6 HOH A 171 571 50 HOH HOH . O 6 HOH A 172 572 202 HOH HOH . O 6 HOH A 173 573 76 HOH HOH . O 6 HOH A 174 574 179 HOH HOH . O 6 HOH A 175 575 103 HOH HOH . O 6 HOH A 176 576 262 HOH HOH . O 6 HOH A 177 577 79 HOH HOH . O 6 HOH A 178 578 152 HOH HOH . O 6 HOH A 179 579 132 HOH HOH . O 6 HOH A 180 580 131 HOH HOH . O 6 HOH A 181 581 235 HOH HOH . O 6 HOH A 182 582 112 HOH HOH . O 6 HOH A 183 583 170 HOH HOH . O 6 HOH A 184 584 175 HOH HOH . O 6 HOH A 185 585 64 HOH HOH . O 6 HOH A 186 586 173 HOH HOH . O 6 HOH A 187 587 272 HOH HOH . O 6 HOH A 188 588 182 HOH HOH . O 6 HOH A 189 589 109 HOH HOH . O 6 HOH A 190 590 189 HOH HOH . O 6 HOH A 191 591 187 HOH HOH . O 6 HOH A 192 592 107 HOH HOH . O 6 HOH A 193 593 216 HOH HOH . O 6 HOH A 194 594 94 HOH HOH . O 6 HOH A 195 595 108 HOH HOH . O 6 HOH A 196 596 134 HOH HOH . O 6 HOH A 197 597 201 HOH HOH . O 6 HOH A 198 598 217 HOH HOH . O 6 HOH A 199 599 165 HOH HOH . O 6 HOH A 200 600 254 HOH HOH . O 6 HOH A 201 601 220 HOH HOH . O 6 HOH A 202 602 190 HOH HOH . O 6 HOH A 203 603 215 HOH HOH . O 6 HOH A 204 604 155 HOH HOH . O 6 HOH A 205 605 185 HOH HOH . O 6 HOH A 206 606 228 HOH HOH . O 6 HOH A 207 607 116 HOH HOH . O 6 HOH A 208 608 115 HOH HOH . O 6 HOH A 209 609 148 HOH HOH . O 6 HOH A 210 610 172 HOH HOH . O 6 HOH A 211 611 256 HOH HOH . O 6 HOH A 212 612 140 HOH HOH . O 6 HOH A 213 613 247 HOH HOH . O 6 HOH A 214 614 198 HOH HOH . O 6 HOH A 215 615 234 HOH HOH . O 6 HOH A 216 616 137 HOH HOH . O 6 HOH A 217 617 119 HOH HOH . O 6 HOH A 218 618 18 HOH HOH . O 6 HOH A 219 619 181 HOH HOH . O 6 HOH A 220 620 258 HOH HOH . O 6 HOH A 221 621 114 HOH HOH . O 6 HOH A 222 622 257 HOH HOH . O 6 HOH A 223 623 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 5 -33.884 16.924 97.201 1 29.46 ? C1 GOL 313 A 1 HETATM 2 O O1 GOL . . . N 5 -35.246 16.971 97.528 1 44.62 ? O1 GOL 313 A 1 HETATM 3 C C2 GOL . . . N 5 -33.693 17.03 95.684 1 29.83 ? C2 GOL 313 A 1 HETATM 4 O O2 GOL . . . N 5 -32.591 17.871 95.385 1 52.29 ? O2 GOL 313 A 1 HETATM 5 C C3 GOL . . . N 5 -33.427 15.646 95.121 1 43.93 ? C3 GOL 313 A 1 HETATM 6 O O3 GOL . . . N 5 -32.479 15.01 95.948 1 36.46 ? O3 GOL 313 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #