data_6J9Q # _model_server_result.job_id XUfAWqj3xnDCAKygKwB1QQ _model_server_result.datetime_utc '2025-07-03 23:13:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6J9Q # _exptl.entry_id 6J9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J9Q _cell.length_a 62.598 _cell.length_b 123.149 _cell.length_c 154.223 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,O,P 1 1 C,D,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 284 B CYS 278 1_555 B SG CYS 325 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 D SG CYS 284 D CYS 278 1_555 D SG CYS 325 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6J9Q _atom_sites.fract_transf_matrix[1][1] 0.015975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 601 601 GOL GOL . F 3 ANP A 1 602 701 ANP ANP . G 2 GOL B 1 601 601 GOL GOL . H 2 GOL B 1 602 602 GOL GOL . I 3 ANP B 1 603 701 ANP ANP . J 2 GOL C 1 601 601 GOL GOL . K 3 ANP C 1 602 701 ANP ANP . L 2 GOL D 1 601 601 GOL GOL . M 3 ANP D 1 602 701 ANP ANP . N 2 GOL D 1 603 602 GOL GOL . O 4 HOH A 1 701 55 HOH HOH . O 4 HOH A 2 702 49 HOH HOH . O 4 HOH A 3 703 42 HOH HOH . O 4 HOH A 4 704 56 HOH HOH . O 4 HOH A 5 705 59 HOH HOH . O 4 HOH A 6 706 50 HOH HOH . O 4 HOH A 7 707 35 HOH HOH . O 4 HOH A 8 708 52 HOH HOH . P 4 HOH B 1 701 30 HOH HOH . P 4 HOH B 2 702 41 HOH HOH . P 4 HOH B 3 703 37 HOH HOH . Q 4 HOH C 1 701 21 HOH HOH . Q 4 HOH C 2 702 46 HOH HOH . Q 4 HOH C 3 703 53 HOH HOH . Q 4 HOH C 4 704 44 HOH HOH . Q 4 HOH C 5 705 45 HOH HOH . R 4 HOH D 1 701 1 HOH HOH . R 4 HOH D 2 702 31 HOH HOH . R 4 HOH D 3 703 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 -2.704 -4.76 61.669 1 127.05 ? PG ANP 602 A 1 HETATM 2 O O1G ANP . . . F 3 -2.318 -3.368 61.215 1 134.05 ? O1G ANP 602 A 1 HETATM 3 O O2G ANP . . . F 3 -1.49 -5.639 61.911 1 118.32 ? O2G ANP 602 A 1 HETATM 4 O O3G ANP . . . F 3 -3.765 -5.411 60.805 1 109.13 ? O3G ANP 602 A 1 HETATM 5 P PB ANP . . . F 3 -4.624 -5.469 64.002 1 115.25 ? PB ANP 602 A 1 HETATM 6 O O1B ANP . . . F 3 -5.89 -4.701 64.319 1 114.19 ? O1B ANP 602 A 1 HETATM 7 O O2B ANP . . . F 3 -4.749 -6.731 63.186 1 129.93 ? O2B ANP 602 A 1 HETATM 8 N N3B ANP . . . F 3 -3.446 -4.419 63.229 1 118.09 ? N3B ANP 602 A 1 HETATM 9 P PA ANP . . . F 3 -2.895 -7.024 65.607 1 102.91 ? PA ANP 602 A 1 HETATM 10 O O1A ANP . . . F 3 -2.466 -6.946 67.061 1 96.09 ? O1A ANP 602 A 1 HETATM 11 O O2A ANP . . . F 3 -1.903 -6.958 64.475 1 89.77 ? O2A ANP 602 A 1 HETATM 12 O O3A ANP . . . F 3 -4.024 -5.886 65.435 1 110.34 ? O3A ANP 602 A 1 HETATM 13 O O5' ANP . . . F 3 -3.733 -8.384 65.349 1 106.12 ? O5' ANP 602 A 1 HETATM 14 C C5' ANP . . . F 3 -3.155 -9.671 65.55 1 98.95 ? C5' ANP 602 A 1 HETATM 15 C C4' ANP . . . F 3 -4.121 -10.794 65.204 1 98.38 ? C4' ANP 602 A 1 HETATM 16 O O4' ANP . . . F 3 -3.531 -12.024 65.628 1 106.33 ? O4' ANP 602 A 1 HETATM 17 C C3' ANP . . . F 3 -5.486 -10.697 65.875 1 101.53 ? C3' ANP 602 A 1 HETATM 18 O O3' ANP . . . F 3 -6.5 -10.461 64.886 1 97.57 ? O3' ANP 602 A 1 HETATM 19 C C2' ANP . . . F 3 -5.679 -12.01 66.632 1 101.42 ? C2' ANP 602 A 1 HETATM 20 O O2' ANP . . . F 3 -6.673 -12.843 66.019 1 97.68 ? O2' ANP 602 A 1 HETATM 21 C C1' ANP . . . F 3 -4.323 -12.707 66.602 1 100.48 ? C1' ANP 602 A 1 HETATM 22 N N9 ANP . . . F 3 -3.556 -12.667 67.878 1 101.95 ? N9 ANP 602 A 1 HETATM 23 C C8 ANP . . . F 3 -3.4 -11.609 68.713 1 102.41 ? C8 ANP 602 A 1 HETATM 24 N N7 ANP . . . F 3 -2.61 -11.937 69.776 1 98.72 ? N7 ANP 602 A 1 HETATM 25 C C5 ANP . . . F 3 -2.241 -13.223 69.62 1 99.64 ? C5 ANP 602 A 1 HETATM 26 C C6 ANP . . . F 3 -1.411 -14.199 70.366 1 100.71 ? C6 ANP 602 A 1 HETATM 27 N N6 ANP . . . F 3 -0.808 -13.849 71.525 1 106.72 ? N6 ANP 602 A 1 HETATM 28 N N1 ANP . . . F 3 -1.276 -15.448 69.852 1 98.62 ? N1 ANP 602 A 1 HETATM 29 C C2 ANP . . . F 3 -1.875 -15.823 68.698 1 101.87 ? C2 ANP 602 A 1 HETATM 30 N N3 ANP . . . F 3 -2.641 -14.984 67.967 1 100.52 ? N3 ANP 602 A 1 HETATM 31 C C4 ANP . . . F 3 -2.858 -13.699 68.365 1 99.22 ? C4 ANP 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #