data_6J9Q # _model_server_result.job_id DCvjaigsgl10m1bXr4Y8Dg _model_server_result.datetime_utc '2024-10-25 20:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 6J9Q # _exptl.entry_id 6J9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J9Q _cell.length_a 62.598 _cell.length_b 123.149 _cell.length_c 154.223 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,O,P 1 1 C,D,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 284 B CYS 278 1_555 B SG CYS 325 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 D SG CYS 284 D CYS 278 1_555 D SG CYS 325 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6J9Q _atom_sites.fract_transf_matrix[1][1] 0.015975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 601 601 GOL GOL . F 3 ANP A 1 602 701 ANP ANP . G 2 GOL B 1 601 601 GOL GOL . H 2 GOL B 1 602 602 GOL GOL . I 3 ANP B 1 603 701 ANP ANP . J 2 GOL C 1 601 601 GOL GOL . K 3 ANP C 1 602 701 ANP ANP . L 2 GOL D 1 601 601 GOL GOL . M 3 ANP D 1 602 701 ANP ANP . N 2 GOL D 1 603 602 GOL GOL . O 4 HOH A 1 701 55 HOH HOH . O 4 HOH A 2 702 49 HOH HOH . O 4 HOH A 3 703 42 HOH HOH . O 4 HOH A 4 704 56 HOH HOH . O 4 HOH A 5 705 59 HOH HOH . O 4 HOH A 6 706 50 HOH HOH . O 4 HOH A 7 707 35 HOH HOH . O 4 HOH A 8 708 52 HOH HOH . P 4 HOH B 1 701 30 HOH HOH . P 4 HOH B 2 702 41 HOH HOH . P 4 HOH B 3 703 37 HOH HOH . Q 4 HOH C 1 701 21 HOH HOH . Q 4 HOH C 2 702 46 HOH HOH . Q 4 HOH C 3 703 53 HOH HOH . Q 4 HOH C 4 704 44 HOH HOH . Q 4 HOH C 5 705 45 HOH HOH . R 4 HOH D 1 701 1 HOH HOH . R 4 HOH D 2 702 31 HOH HOH . R 4 HOH D 3 703 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 3 -49.767 -48.057 78.546 1 82.51 ? PG ANP 603 B 1 HETATM 2 O O1G ANP . . . I 3 -51.256 -47.888 78.72 1 83.8 ? O1G ANP 603 B 1 HETATM 3 O O2G ANP . . . I 3 -49.153 -47.094 77.541 1 77.65 ? O2G ANP 603 B 1 HETATM 4 O O3G ANP . . . I 3 -49.428 -49.51 78.322 1 83 ? O3G ANP 603 B 1 HETATM 5 P PB ANP . . . I 3 -49.837 -47.765 81.607 1 73.65 ? PB ANP 603 B 1 HETATM 6 O O1B ANP . . . I 3 -49.022 -47.212 82.748 1 83.24 ? O1B ANP 603 B 1 HETATM 7 O O2B ANP . . . I 3 -51.275 -47.293 81.546 1 83.16 ? O2B ANP 603 B 1 HETATM 8 N N3B ANP . . . I 3 -49.035 -47.562 80.068 1 80.31 ? N3B ANP 603 B 1 HETATM 9 P PA ANP . . . I 3 -48.499 -50.152 81.607 1 75.88 ? PA ANP 603 B 1 HETATM 10 O O1A ANP . . . I 3 -47.621 -49.903 82.812 1 80.52 ? O1A ANP 603 B 1 HETATM 11 O O2A ANP . . . I 3 -47.931 -49.878 80.248 1 78.62 ? O2A ANP 603 B 1 HETATM 12 O O3A ANP . . . I 3 -49.844 -49.335 81.795 1 69.78 ? O3A ANP 603 B 1 HETATM 13 O O5' ANP . . . I 3 -49.036 -51.676 81.635 1 71.17 ? O5' ANP 603 B 1 HETATM 14 C C5' ANP . . . I 3 -49.284 -52.351 82.873 1 63.53 ? C5' ANP 603 B 1 HETATM 15 C C4' ANP . . . I 3 -50.4 -53.382 82.745 1 59.81 ? C4' ANP 603 B 1 HETATM 16 O O4' ANP . . . I 3 -51.658 -52.731 82.616 1 55.44 ? O4' ANP 603 B 1 HETATM 17 C C3' ANP . . . I 3 -50.264 -54.278 81.52 1 57.93 ? C3' ANP 603 B 1 HETATM 18 O O3' ANP . . . I 3 -50.646 -55.607 81.87 1 51.32 ? O3' ANP 603 B 1 HETATM 19 C C2' ANP . . . I 3 -51.23 -53.698 80.512 1 57.86 ? C2' ANP 603 B 1 HETATM 20 O O2' ANP . . . I 3 -51.74 -54.685 79.607 1 60.42 ? O2' ANP 603 B 1 HETATM 21 C C1' ANP . . . I 3 -52.306 -53.193 81.44 1 56.34 ? C1' ANP 603 B 1 HETATM 22 N N9 ANP . . . I 3 -53.113 -52.099 80.888 1 58.36 ? N9 ANP 603 B 1 HETATM 23 C C8 ANP . . . I 3 -52.79 -50.793 80.838 1 57.54 ? C8 ANP 603 B 1 HETATM 24 N N7 ANP . . . I 3 -53.793 -50.059 80.299 1 56.72 ? N7 ANP 603 B 1 HETATM 25 C C5 ANP . . . I 3 -54.769 -50.923 80.014 1 58.17 ? C5 ANP 603 B 1 HETATM 26 C C6 ANP . . . I 3 -56.101 -50.825 79.433 1 60.78 ? C6 ANP 603 B 1 HETATM 27 N N6 ANP . . . I 3 -56.526 -49.611 79.062 1 62.69 ? N6 ANP 603 B 1 HETATM 28 N N1 ANP . . . I 3 -56.833 -51.962 79.29 1 64.49 ? N1 ANP 603 B 1 HETATM 29 C C2 ANP . . . I 3 -56.376 -53.175 79.68 1 63.75 ? C2 ANP 603 B 1 HETATM 30 N N3 ANP . . . I 3 -55.155 -53.338 80.225 1 58.72 ? N3 ANP 603 B 1 HETATM 31 C C4 ANP . . . I 3 -54.333 -52.27 80.405 1 59.09 ? C4 ANP 603 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #