data_6J9T # _model_server_result.job_id Uq4arGAbXGBiW12chxAJXg _model_server_result.datetime_utc '2024-12-27 03:05:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 6J9T # _exptl.entry_id 6J9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.53 _cell.angle_gamma 90 _cell.entry_id 6J9T _cell.length_a 164.25 _cell.length_b 83.582 _cell.length_c 180.094 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,P,Q 1 1,2 C,D,E,F,J,K,L,M,N,O,R,S,T,U 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -9.617151 0 360.059586 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 O N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 70 n n P1 O2P FBP sing 71 n n P1 O3P FBP sing 72 n n P1 O1 FBP sing 73 n n O2P HOP2 FBP sing 74 n n O3P HOP3 FBP sing 75 n n O1 C1 FBP sing 76 n n C1 C2 FBP sing 77 n n C1 H11 FBP sing 78 n n C1 H12 FBP sing 79 n n C2 O2 FBP sing 80 n n C2 C3 FBP sing 81 n n C2 O5 FBP sing 82 n n O2 HO2 FBP sing 83 n n C3 O3 FBP sing 84 n n C3 C4 FBP sing 85 n n C3 H3 FBP sing 86 n n O3 HO3 FBP sing 87 n n C4 O4 FBP sing 88 n n C4 C5 FBP sing 89 n n C4 H4 FBP sing 90 n n O4 HO4 FBP sing 91 n n C5 O5 FBP sing 92 n n C5 C6 FBP sing 93 n n C5 H5 FBP sing 94 n n C6 O6 FBP sing 95 n n C6 H61 FBP sing 96 n n C6 H62 FBP sing 97 n n O6 P2 FBP sing 98 n n P2 O4P FBP doub 99 n n P2 O5P FBP sing 100 n n P2 O6P FBP sing 101 n n O5P HOP5 FBP sing 102 n n O6P HOP6 FBP sing 103 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6J9T _atom_sites.fract_transf_matrix[1][1] 0.006088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 A 1 401 401 SO4 SO4 . H 2 SO4 B 1 401 401 SO4 SO4 . I 3 FBP B 1 402 1 FBP FBP . J 2 SO4 C 1 401 401 SO4 SO4 . K 2 SO4 D 1 401 401 SO4 SO4 . L 2 SO4 E 1 401 401 SO4 SO4 . M 3 FBP E 1 402 3 FBP FBP . N 2 SO4 F 1 401 401 SO4 SO4 . O 3 FBP F 1 402 2 FBP FBP . P 4 HOH A 1 501 84 HOH HOH . P 4 HOH A 2 502 80 HOH HOH . P 4 HOH A 3 503 107 HOH HOH . P 4 HOH A 4 504 79 HOH HOH . Q 4 HOH B 1 501 78 HOH HOH . Q 4 HOH B 2 502 102 HOH HOH . Q 4 HOH B 3 503 68 HOH HOH . Q 4 HOH B 4 504 92 HOH HOH . Q 4 HOH B 5 505 67 HOH HOH . Q 4 HOH B 6 506 101 HOH HOH . Q 4 HOH B 7 507 69 HOH HOH . Q 4 HOH B 8 508 109 HOH HOH . Q 4 HOH B 9 509 87 HOH HOH . Q 4 HOH B 10 510 108 HOH HOH . R 4 HOH C 1 501 1 HOH HOH . R 4 HOH C 2 502 17 HOH HOH . R 4 HOH C 3 503 73 HOH HOH . R 4 HOH C 4 504 66 HOH HOH . R 4 HOH C 5 505 29 HOH HOH . R 4 HOH C 6 506 97 HOH HOH . R 4 HOH C 7 507 12 HOH HOH . R 4 HOH C 8 508 70 HOH HOH . R 4 HOH C 9 509 51 HOH HOH . R 4 HOH C 10 510 90 HOH HOH . R 4 HOH C 11 511 49 HOH HOH . R 4 HOH C 12 512 74 HOH HOH . R 4 HOH C 13 513 7 HOH HOH . R 4 HOH C 14 514 104 HOH HOH . R 4 HOH C 15 515 21 HOH HOH . R 4 HOH C 16 516 75 HOH HOH . R 4 HOH C 17 517 53 HOH HOH . R 4 HOH C 18 518 81 HOH HOH . R 4 HOH C 19 519 42 HOH HOH . R 4 HOH C 20 520 50 HOH HOH . R 4 HOH C 21 521 64 HOH HOH . S 4 HOH D 1 501 33 HOH HOH . S 4 HOH D 2 502 30 HOH HOH . S 4 HOH D 3 503 82 HOH HOH . S 4 HOH D 4 504 105 HOH HOH . S 4 HOH D 5 505 88 HOH HOH . S 4 HOH D 6 506 95 HOH HOH . S 4 HOH D 7 507 98 HOH HOH . S 4 HOH D 8 508 106 HOH HOH . S 4 HOH D 9 509 99 HOH HOH . S 4 HOH D 10 510 9 HOH HOH . S 4 HOH D 11 511 32 HOH HOH . S 4 HOH D 12 512 59 HOH HOH . S 4 HOH D 13 513 76 HOH HOH . S 4 HOH D 14 514 19 HOH HOH . S 4 HOH D 15 515 83 HOH HOH . S 4 HOH D 16 516 86 HOH HOH . S 4 HOH D 17 517 85 HOH HOH . S 4 HOH D 18 518 71 HOH HOH . S 4 HOH D 19 519 54 HOH HOH . S 4 HOH D 20 520 14 HOH HOH . S 4 HOH D 21 521 100 HOH HOH . S 4 HOH D 22 522 35 HOH HOH . S 4 HOH D 23 523 46 HOH HOH . S 4 HOH D 24 524 63 HOH HOH . S 4 HOH D 25 525 43 HOH HOH . S 4 HOH D 26 526 89 HOH HOH . S 4 HOH D 27 527 48 HOH HOH . T 4 HOH E 1 501 44 HOH HOH . T 4 HOH E 2 502 15 HOH HOH . T 4 HOH E 3 503 23 HOH HOH . T 4 HOH E 4 504 57 HOH HOH . T 4 HOH E 5 505 45 HOH HOH . T 4 HOH E 6 506 72 HOH HOH . T 4 HOH E 7 507 13 HOH HOH . T 4 HOH E 8 508 26 HOH HOH . T 4 HOH E 9 509 96 HOH HOH . T 4 HOH E 10 510 3 HOH HOH . T 4 HOH E 11 511 93 HOH HOH . T 4 HOH E 12 512 24 HOH HOH . T 4 HOH E 13 513 31 HOH HOH . T 4 HOH E 14 514 94 HOH HOH . T 4 HOH E 15 515 20 HOH HOH . T 4 HOH E 16 516 77 HOH HOH . T 4 HOH E 17 517 38 HOH HOH . T 4 HOH E 18 518 103 HOH HOH . T 4 HOH E 19 519 60 HOH HOH . T 4 HOH E 20 520 11 HOH HOH . T 4 HOH E 21 521 34 HOH HOH . T 4 HOH E 22 522 22 HOH HOH . T 4 HOH E 23 523 27 HOH HOH . T 4 HOH E 24 524 47 HOH HOH . T 4 HOH E 25 525 36 HOH HOH . T 4 HOH E 26 526 39 HOH HOH . T 4 HOH E 27 527 37 HOH HOH . T 4 HOH E 28 528 4 HOH HOH . T 4 HOH E 29 529 65 HOH HOH . T 4 HOH E 30 530 18 HOH HOH . T 4 HOH E 31 531 110 HOH HOH . T 4 HOH E 32 532 16 HOH HOH . T 4 HOH E 33 533 61 HOH HOH . U 4 HOH F 1 501 91 HOH HOH . U 4 HOH F 2 502 62 HOH HOH . U 4 HOH F 3 503 41 HOH HOH . U 4 HOH F 4 504 5 HOH HOH . U 4 HOH F 5 505 10 HOH HOH . U 4 HOH F 6 506 25 HOH HOH . U 4 HOH F 7 507 55 HOH HOH . U 4 HOH F 8 508 28 HOH HOH . U 4 HOH F 9 509 2 HOH HOH . U 4 HOH F 10 510 6 HOH HOH . U 4 HOH F 11 511 56 HOH HOH . U 4 HOH F 12 512 52 HOH HOH . U 4 HOH F 13 513 8 HOH HOH . U 4 HOH F 14 514 58 HOH HOH . U 4 HOH F 15 515 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . I 3 -13.266 -1.28 162.25 0.5 42.41 ? P1 FBP 402 B 1 HETATM 2 O O1P FBP . . . I 3 -14.298 -1.945 161.292 1 33.74 ? O1P FBP 402 B 1 HETATM 3 O O2P FBP . . . I 3 -12.102 -2.034 162.757 1 44.82 ? O2P FBP 402 B 1 HETATM 4 O O3P FBP . . . I 3 -12.746 -0.108 161.538 1 43 ? O3P FBP 402 B 1 HETATM 5 O O1 FBP . . . I 3 -13.735 -0.665 163.704 0.5 37.25 ? O1 FBP 402 B 1 HETATM 6 C C1 FBP . . . I 3 -12.872 -0.6 164.875 0.5 35.03 ? C1 FBP 402 B 1 HETATM 7 C C2 FBP . . . I 3 -12.781 0.751 165.63 0.5 34.11 ? C2 FBP 402 B 1 HETATM 8 O O2 FBP . . . I 3 -11.625 1.453 165.215 0.5 35.12 ? O2 FBP 402 B 1 HETATM 9 C C3 FBP . . . I 3 -12.632 0.698 167.15 0.5 32.65 ? C3 FBP 402 B 1 HETATM 10 O O3 FBP . . . I 3 -11.359 1.249 167.485 0.5 26.01 ? O3 FBP 402 B 1 HETATM 11 C C4 FBP . . . I 3 -13.765 1.541 167.735 0.5 34.47 ? C4 FBP 402 B 1 HETATM 12 O O4 FBP . . . I 3 -14.305 0.972 168.939 0.5 28.48 ? O4 FBP 402 B 1 HETATM 13 C C5 FBP . . . I 3 -14.748 1.643 166.558 0.5 36.58 ? C5 FBP 402 B 1 HETATM 14 O O5 FBP . . . I 3 -13.875 1.613 165.414 0.5 35.11 ? O5 FBP 402 B 1 HETATM 15 C C6 FBP . . . I 3 -15.645 2.885 166.463 0.5 38.53 ? C6 FBP 402 B 1 HETATM 16 O O6 FBP . . . I 3 -16.234 3.077 165.143 0.5 43.97 ? O6 FBP 402 B 1 HETATM 17 P P2 FBP . . . I 3 -17.644 3.886 165.014 1 61.02 ? P2 FBP 402 B 1 HETATM 18 O O4P FBP . . . I 3 -18.226 4.353 163.67 1 36.5 ? O4P FBP 402 B 1 HETATM 19 O O5P FBP . . . I 3 -17.215 4.985 166.001 1 58.91 ? O5P FBP 402 B 1 HETATM 20 O O6P FBP . . . I 3 -18.538 2.771 165.483 1 55.68 ? O6P FBP 402 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #