data_6J9U
#
_model_server_result.job_id            byIPf_oE14WLLCBpM-ln3w 
_model_server_result.datetime_utc      '2024-12-27 00:24:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6j9u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    6J9U 
#
_exptl.entry_id    6J9U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.062 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRUVIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.52 
_cell.angle_gamma         90 
_cell.entry_id            6J9U 
_cell.length_a            165.32 
_cell.length_b            82.8 
_cell.length_c            180.15 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6J9U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,S,T 1 1,2 
C,D,E,F,K,L,M,N,O,P,Q,R,U,V,W,X 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -9.557279 0 360.17322 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 K N N 
? 2 M N N 
#
_chem_comp.formula           'C3 H4 O3' 
_chem_comp.formula_weight    88.062 
_chem_comp.id                PYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O PYR doub 264 n n 
C OXT PYR sing 265 n n 
C CA PYR sing 266 n n 
OXT HXT PYR sing 267 n n 
CA O3 PYR doub 268 n n 
CA CB PYR sing 269 n n 
CB HB1 PYR sing 270 n n 
CB HB2 PYR sing 271 n n 
CB HB3 PYR sing 272 n n 
#
_atom_sites.entry_id                     6J9U 
_atom_sites.fract_transf_matrix[1][1]    0.006049 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000161 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012077 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005553 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PYR A 1 401 401 PYR PYR . 
H 3 SO4 A 1 402 402 SO4 SO4 . 
I 3 SO4 B 1 401 401 SO4 SO4 . 
J 3 SO4 B 1 402 402 SO4 SO4 . 
K 2 PYR C 1 401 401 PYR PYR . 
L 3 SO4 C 1 402 402 SO4 SO4 . 
M 2 PYR D 1 401 401 PYR PYR . 
N 3 SO4 D 1 402 402 SO4 SO4 . 
O 3 SO4 E 1 401 401 SO4 SO4 . 
P 3 SO4 E 1 402 402 SO4 SO4 . 
Q 3 SO4 F 1 401 401 SO4 SO4 . 
R 3 SO4 F 1 402 402 SO4 SO4 . 
S 4 HOH A 1 501 65 HOH HOH . 
S 4 HOH A 2 502 59 HOH HOH . 
S 4 HOH A 3 503 44 HOH HOH . 
T 4 HOH B 1 501 54 HOH HOH . 
T 4 HOH B 2 502 48 HOH HOH . 
T 4 HOH B 3 503 51 HOH HOH . 
T 4 HOH B 4 504 43 HOH HOH . 
U 4 HOH C 1 501 20 HOH HOH . 
U 4 HOH C 2 502 47 HOH HOH . 
U 4 HOH C 3 503 10 HOH HOH . 
U 4 HOH C 4 504 16 HOH HOH . 
U 4 HOH C 5 505 5 HOH HOH . 
U 4 HOH C 6 506 32 HOH HOH . 
U 4 HOH C 7 507 11 HOH HOH . 
U 4 HOH C 8 508 24 HOH HOH . 
U 4 HOH C 9 509 31 HOH HOH . 
U 4 HOH C 10 510 25 HOH HOH . 
U 4 HOH C 11 511 56 HOH HOH . 
V 4 HOH D 1 501 14 HOH HOH . 
V 4 HOH D 2 502 26 HOH HOH . 
V 4 HOH D 3 503 50 HOH HOH . 
V 4 HOH D 4 504 55 HOH HOH . 
V 4 HOH D 5 505 49 HOH HOH . 
V 4 HOH D 6 506 1 HOH HOH . 
V 4 HOH D 7 507 12 HOH HOH . 
V 4 HOH D 8 508 9 HOH HOH . 
V 4 HOH D 9 509 63 HOH HOH . 
V 4 HOH D 10 510 61 HOH HOH . 
V 4 HOH D 11 511 17 HOH HOH . 
V 4 HOH D 12 512 2 HOH HOH . 
V 4 HOH D 13 513 29 HOH HOH . 
V 4 HOH D 14 514 57 HOH HOH . 
V 4 HOH D 15 515 30 HOH HOH . 
V 4 HOH D 16 516 52 HOH HOH . 
V 4 HOH D 17 517 27 HOH HOH . 
V 4 HOH D 18 518 28 HOH HOH . 
V 4 HOH D 19 519 22 HOH HOH . 
V 4 HOH D 20 520 38 HOH HOH . 
W 4 HOH E 1 501 7 HOH HOH . 
W 4 HOH E 2 502 39 HOH HOH . 
W 4 HOH E 3 503 4 HOH HOH . 
W 4 HOH E 4 504 41 HOH HOH . 
W 4 HOH E 5 505 62 HOH HOH . 
W 4 HOH E 6 506 3 HOH HOH . 
W 4 HOH E 7 507 13 HOH HOH . 
W 4 HOH E 8 508 45 HOH HOH . 
W 4 HOH E 9 509 40 HOH HOH . 
W 4 HOH E 10 510 21 HOH HOH . 
W 4 HOH E 11 511 35 HOH HOH . 
W 4 HOH E 12 512 33 HOH HOH . 
W 4 HOH E 13 513 37 HOH HOH . 
X 4 HOH F 1 501 15 HOH HOH . 
X 4 HOH F 2 502 42 HOH HOH . 
X 4 HOH F 3 503 18 HOH HOH . 
X 4 HOH F 4 504 46 HOH HOH . 
X 4 HOH F 5 505 64 HOH HOH . 
X 4 HOH F 6 506 58 HOH HOH . 
X 4 HOH F 7 507 19 HOH HOH . 
X 4 HOH F 8 508 53 HOH HOH . 
X 4 HOH F 9 509 60 HOH HOH . 
X 4 HOH F 10 510 36 HOH HOH . 
X 4 HOH F 11 511 8 HOH HOH . 
X 4 HOH F 12 512 34 HOH HOH . 
X 4 HOH F 13 513 23 HOH HOH . 
X 4 HOH F 14 514 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C PYR . . . M 2 60.772 31.275 120.889 1 33.18 ? C PYR 401 D 1 
HETATM 2 O O PYR . . . M 2 60.957 31.688 119.781 1 29.49 ? O PYR 401 D 1 
HETATM 3 O OXT PYR . . . M 2 59.812 31.496 121.594 1 36.65 ? OXT PYR 401 D 1 
HETATM 4 C CA PYR . . . M 2 61.813 30.51 121.379 1 37.73 ? CA PYR 401 D 1 
HETATM 5 O O3 PYR . . . M 2 62.8 31.081 120.987 1 41.6 ? O3 PYR 401 D 1 
HETATM 6 C CB PYR . . . M 2 61.642 29.249 122.25 1 39.13 ? CB PYR 401 D 1 
#
_model_server_stats.io_time_ms              136 
_model_server_stats.parse_time_ms           86 
_model_server_stats.create_model_time_ms    231 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#